G1502478


Basic Information

Item Value
gene id G1502478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 89073100 ~ 89084957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1717905
cagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacaggtaccattacagtatgatgtcctctatctagcaACAGATaccagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtctctatctaggaacagataccattacattatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtctctatctaggaacagataccattacattatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccaggtaccattacagtatgatgtcctctatctaggaacagataccagatAACATTACAGTacgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacaggtaccattacagtatgatgtcctctatctaggaacagataccaggtaccattacagtatgatgtcctctatctaggaacagataccagataccactacagtacgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacaggtaccattacagtatgatgtcctctatctaggaacaggtaccattacagtatgatgtcctatatctaggaacagataacaggtaccattacagtatgatatcctctatctaggaacagataccagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccagataccattacagtattatgtcctctatctaggaacagataccagataccattacagtatgatgtcctctatctatgAACAGATaccagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcttctatctaggaacaggtaccagataccattacagtatgctgtcctctatctaggaacaggtaccagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagttagcagataccattacagtatgatgtcctctatctaggaacaggtaccagataccattacagtatgatgtcctctatctaggaacagataccaggtaccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatctaggaacagataccattacagtatgatgtcctctatcttgGAACACATACCAACGTGTAAGAGAATGTCTTGTTGAGTTGTTCATGGGTTGCCTTGATACCTAACAACACAACTTCACTACAAGAGAGACTCAGACTCTTCAGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1717905 True 1693 lncRNA 0.39 3 89073100 89084957

Neighbor

gene id symbol gene type direction distance location
ssuh2.1 LOC106566200 coding upstream 107462 88912896 ~ 88965638 (+)
cand2 LOC106566202 coding upstream 175591 88877784 ~ 88897509 (+)
LOC118940112 NA coding upstream 405049 88667045 ~ 88668051 (+)
LOC118940163 NA coding upstream 455285 88606768 ~ 88617815 (+)
LOC118940508 NA coding upstream 636268 88435946 ~ 88436832 (+)
LOC110493303 LOC106566213 coding downstream 21190 89106147 ~ 89150807 (+)
LOC110493302 LOC106583746 coding downstream 77793 89162750 ~ 89524314 (+)
LOC110494823 LOC106566211 coding downstream 447762 89532719 ~ 89539265 (+)
LOC110494822 LOC106566210 coding downstream 455203 89540160 ~ 89543408 (+)
LOC110494819 LOC106565061 coding downstream 1064725 90149682 ~ 90248746 (+)
G1502465 NA non-coding upstream 42567 89030103 ~ 89030533 (+)
G1502462 NA non-coding upstream 48615 89023956 ~ 89024485 (+)
G1502439 NA non-coding upstream 91670 88980660 ~ 88981430 (+)
G1502408 LOC106583741 non-coding upstream 167159 88901184 ~ 88905941 (+)
G1502395 NA non-coding upstream 200270 88872438 ~ 88872830 (+)
LOC110494825 LOC106566214 non-coding downstream 8240 88965847 ~ 89103615 (+)
G1502846 NA non-coding downstream 45403 89130360 ~ 89131054 (+)
G1502860 NA non-coding downstream 80992 89165949 ~ 89166294 (+)
G1502862 NA non-coding downstream 82217 89167174 ~ 89168105 (+)
G1502883 NA non-coding downstream 121994 89206951 ~ 89214525 (+)
G1502370 NA other upstream 264131 88806978 ~ 88808969 (+)
G1502352 NA other upstream 272460 88769870 ~ 88800640 (+)
LOC110494816 LOC106566192 other upstream 948226 88089634 ~ 88143474 (+)
LOC110494789 bloc1s1 other upstream 1586210 87415720 ~ 87486890 (+)
G1501148 NA other upstream 1904093 87168539 ~ 87169007 (+)
G1503119 NA other downstream 683600 89768557 ~ 89786154 (+)
G1503337 NA other downstream 1136588 90221545 ~ 90223659 (+)
LOC110504503 LOC106566236 other downstream 3200098 92282926 ~ 92317484 (+)
G1505894 NA other downstream 3234588 92319545 ~ 92320777 (+)

Expression


Co-expression Network