XLOC_003414


Basic Information

Item Value
gene id XLOC_003414
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21302712 ~ 21306762 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008590
TACTTATTAAATTAGTGTAAAACAGAGCCTTAAAACAGTCATGCATTCCTTAATCCTTCTTAAGGAACATCTTTAAGCTCTTATAATCATTGTAAGTTTAAGTAACCTCAATGCAATGGTGCATTAGCCACCTACTAACCCCCTTTTGGCTGTCACCTTAACAGACACTTTAATACAAAGCATCTTACAGGGCATTCAAGGTATACATTTTAATCCGTCCATGAGAGTCGAACAAACAGCCTTGCAGAGTGGAAACACTGGCCTTCATTTTATCTACTCATTTCAAGAATGCTAAACGAAACGGGAAAGCTTAGATTTCATTTAGAGTTCCAAAATGGCAGAAATATTAAGCTTCTGAAACGACAGCAAAGGAAAGTAATGGATGAGCTTATTTTGCATCAAATCATTTAAGTTCTAGAGAGCTAATCAATCTTTAAACAGAGTCTGGAGTCATTCTAAAGAGCAAAGGTGCAAAGCTTTCAGTGAAGCTTTCAAAATGTTCACACTTGTACTTCATGTACACCTAGAGGGTAAATACTTTTTAGAACTTAAGGGGAAAGCATTAGTATCTAAATAGTTCATATTAGCAGGAAACCTTAAAAATACTTATTAGTAAGGACATGTACTAGCATTGATGGTGCATATTAGCACCCTAAAAAAGGCTAATGTATAAGTCcctaaaattaacaaattactacttaaatgtaaatataagtaACGGAACTACACTCTAAAAACTACTGTGCTTTTTTAACCAATATCTGGTTTAAATATcgacaaacacaaataaaatttaaCCAGATGACAGCTTTGTGCCATTTTCTCAGAGTGCACACATGTCCAATACAAAATCTTTCATCTTACTTTAACAACCTGAACAGTGCTGAACATAATGCAAGGAAACCCACAACAGACAGGCTGTGTTTTCAGTCAAAACACATTAGGTCATAAACCTGTTCTGAATGCATCCAAAACACCTTTCTTACAATTCAGCAGTTAGCAGCATAAAGAAAACAGCACTTCCGTGTAAACGCTTCTCATTTTTTTGCTATTAGGTGCAAATGCACTCACTCAGTCTTCACCAACCCATCAGCCTTGCATTCATACACTACCTTTTCTACTTGTTTTGCCTGTGGACGCCGGAAGAATGAGGTTTTGGCGGTGAAGAAGGAGAAATCGTCGCTCTCCTCATCCAGGCTGCAGTATCCACTGCTCATGCTATTGCTGCCGGTCATTTGCGGGGTCGGATCCAGTTTGGGGGACTCCCTACACGGGTCTTCGTGGGACCAAATGCACCATTCCAGGTTCCAGGGATGGGAAGGGGAGGATGGGTTGGGAGCGGGGGACCACAGCTTCAGGTGAAGGGCCAGAGCTCCACGTGCTCCCGGAAACAAGCCCTGAAACTTCTCTCAGAGGTATCTGATGCTCAGTTCCTGTTTCCACAGGTCACAAACAGGCAGAAGTACCTTCTCTCGCTCCTGTCAGCCAATAGCCTGCTGATCTAAACCCACGACAACTGCTGGAGATGAGTAAAACAGCCCAAGGTGCGGGAAAGCATGTCAGTGCACATAAATTGCTGGTCTTGTCATCCACCAACTCGCATGCAGTCACACAGTCTTGCCATCAAAAGAGCTAAAGGTGTGAGAATGTTGCACGAACATTGTGTTGCATCTTCCTTGAACAGGCTCAGATGGATGCAGGAGTCTCCGGTAAAGCTGCGACGAAAGACAGCAGAAAATCAACCTGCTTCACAGTGACTGAGTGAGCGGAGAACTGACGTACTGCACCTCCCTCTCTTCCTCCTTCTCTCACACCACCGCGcacgctctctcgctctctctctctttctcgctccACCATCTGTGGTTGGGTCTGTTATCTGCCTACAAGCTTGCGCAaacaccctcctccttccccctCCCTCCTCCACTATCGCTCTTCCTGCATGCAACTGCTCTTTGCTCAACTCAAGACATTTCCCATTGAAGAGAAAAAGAGACTGAGAGAAGGCAAGAAAGAACGAAAGAGAATAGACCAGAGGAGCGGGAGGAGGAAGGAGAGGAAAAGGAGAGAGATCTCTGCATGTGGTCTTGCAGAGGCTATTTTACATAGTACCTGATATGCAAAATTGCCCTTGATGGCAGGCAGAATGAATTCGGAGTATTGTTGAAAGGCACTGAGACGTTAATGTAGGCAGCATTGAAAAAGAGATCTTATGTTTTATCAATTTGGAAAAAATAAGGGACGATGTGTAATCACATGatcattatattaaaaaaggTGGTTTTGTATCAATCTAACAgggtttattttgtaaaattatatcATGAGTTATATCATAAATAAAGAGATGGGCTCAACCAACAAGGACTTccaggacaacacatacacttaatacacagaTACACTTATTTTCATTCTatctacaatatatatttttttattcctgCGGAAcctttagtaaaataaaataaaatcaaataaataaaataaaatctgcagaTTCCTTGTGGGCCTACCTATGTGCAATAAaattgcaggttaactatgtctgTAGATAATAACgtatatttgattgtaactttaacttaatttaattgtaatcCAATAACGTGCACTTTTTGAAAAGCTGCTTTGaaagaattattaatttaaataattaatgctatacaaataaacttgaattgaactgaataaatCTCAAAGCATTTTGACTAATATGACCTAgtataaataaaagaatgaatgaataaatgaaattaataaaatatttaaatttttttaaataattatctaattaaatattccaaataaaataaacatgtgtgtgtatataaaaacacatatttaccaaataaataataaatgaaatgataaaaaaatatatgaatgcaaaatcacattaaatatttaacaaattgcTATTTAGAATAAATTAATTAGTGAATATTtgagtttagatttttttttctataatgaaAGAACCACAGTTAAATGAGAAACATGAAAATAAACTCACTGCAAGCAGGTGGAATGGTCAATTACAATAAAGCATTCTAAACAAATCATTTCTTTTGTGATATACTATAAAATGTTGCATTCTTCCAATCAGAATCAAACCTTTTCTCTGCTGCATTTCACTTCTGCATAAACAAAATCCACCATTGTGCCCTGCAAATACTGTTTTCTCTAATAATAAATAACCTGTGAtgttcctcatttgtaagtcactttggataaaagcttctgctacatgatttaatgtaaatttaaatatgcCAGAGAGCCTTTAAAAGCCACAGGTAGAATTCAAAGGCCTCACTGATAATCATTACTGTTGCAcattctataaataattcatcaCACTGTAATGTCCTGCTGCCTCTGCACTGCATGAGCAATCTAACACTAATAGTAATAAACAGAGCAATCGTTTGAATGGAACCTTTAAGAGATGTCTTCCTGATGGACAAGAAAACAGCatctaaaacaaaagcaaattaacCATACAAACACTGCAGACTAAGAAAAACCAGAGCGTCACAACATTAAATGTACATATGTTCCACCGCAGGTCAAAATTAAAGTTGACATCTGATCTCTCCTTGCAGCCATCAGGGCTTTTGGTCTTAACCTTTGACCTTGACCTTGAGCGCATTATTAGTCCAGCTGGAGCACCATTATACGTTAGATGTGCACAAGATAAGCATATAAaatcaaatcactgtcatatacATTCGGCTATCAACAAGAAATGAGTCACagtggtcaaccatttggtattttaataataataactaaactaATGGTGGTTCAACATCCAACTAGTTTATTTGAATTTAGTTTTAGCtatcttgaaaaaatataatCTTGTGTAAGATGGTACTGAAACTGGGACCAAAATGTATCAATACAAACTTTAAACAGAAATGTTTGCtgacctttattattattaattttgatcAATTTCGTTATTCCTGAAGGCTTTTGTGGTTTTGAATACATTTGCCTATTGAAATGTTCAGGTAAAATAAAGCAAACTTAGAACATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008590 True 4051 lncRNA 0.37 1 21302712 21306762

Neighbor

gene id symbol gene type direction distance location
XLOC_003413 BX321912.1 coding upstream 116028 21185469 ~ 21186684 (+)
XLOC_003412 il10 coding upstream 163209 21137948 ~ 21139503 (+)
XLOC_003411 il19l coding upstream 202929 21096339 ~ 21099783 (+)
XLOC_003410 prelp coding upstream 216458 21076872 ~ 21086254 (+)
XLOC_003408 zgc:113307 coding upstream 241146 21050326 ~ 21061566 (+)
XLOC_003415 NA coding downstream 99925 21406687 ~ 21408834 (+)
XLOC_003416 FAM72B coding downstream 279573 21586335 ~ 21598527 (+)
XLOC_003417 NA coding downstream 305909 21612671 ~ 21759025 (+)
XLOC_003418 CR812468.2 coding downstream 343760 21650522 ~ 21650638 (+)
XLOC_003419 NA coding downstream 595915 21902677 ~ 21903694 (+)
XLOC_003369 CR854846.2 misc upstream 5179630 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 8590716 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 8608449 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 8617113 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 8622684 12679732 ~ 12680028 (+)
XLOC_003409 CU459075.1 non-coding upstream 250368 21052228 ~ 21052344 (+)
XLOC_003407 NA non-coding upstream 372388 20928241 ~ 20930324 (+)
XLOC_003405 NA non-coding upstream 411831 20888110 ~ 20890881 (+)
XLOC_003402 BX276115.1 non-coding upstream 1269527 20033066 ~ 20033185 (+)
XLOC_003423 BX537143.1 non-coding downstream 1289964 22596726 ~ 22599593 (+)

Expression


Co-expression Network