G1505924 (LOC106566233)


Basic Information

Item Value
gene id G1505924
gene name LOC106566233
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 92447734 ~ 92467632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1722055
TTTTTAAAACAACTTTTAGATTTTTCCATACAGATAAGCCCCAAATATAACTTAGTTTGCAATTTCTAATATGAATCCATTGCAGTCTTTCACGGTCACACAAAAATGAAAACATTTTCCTTAAAACAAGTAAATTTTAAATAGAAGACATGTCTGTTATAGAAGGCCTGTTCACCCTCTCAGTCTCAACTTTTAAGCTTTTGAATGAACAATAACAAAAAATAAGAGAAATAGTAATTAAAGAAATAAACCTTTCGTCTTATTCAGATCTCTGAGTGGAAACGAAGGAAGCCGTTCAGAGTTCATCCTACCAATCATAtaataacacaatgccacatgaatatatatatatatatatatataccattatATTTTGGTTTTCTTTTGTTATCCTCTAAAATTATCTACAATATTTGACAAGATAGCAGGCAAGTTCAGTACACAGTATGTTATAAACACCAACGAGCAGAACTCAAAACAACTCGAGTTTTTCCTCAACTACATCTGCTGAATGGTTTGACACCCTACAAATGAACCAGGAAGTATCTACAGGTGTTGTAAACAAATGACATTCTCTTTAGGACATAAATAAGTTAAAATAGTTAGAACCATTAAAGAAGAAACAAGGCAACATGCCAACAAACAAAGATAAACtctttatatatatgtatatatactatcTTTAAGAAatactatttatttattattatttatttattatcctCTTTTCCAAACAGGTGCAAATCTACTGTGCAAGTCGAGCCCGACAAACTTGATCTCATTTATAAATACATCGTTACACTTAAACCACACAGGGAACTCACAGACGGGTGAATCGGTTGTCTTTAAAGTCCACAGCACTTCCTACCGACCCACCCAATCAAATCattcaacaaaaaatgttttgaaaACAATTTAAATAAAAACGTTGGGGTAAAGTACATTCATGCAGGAGCgataaaaatgtttttatgtaATTCAAACTATTATTCATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTAGACTGGTTTTCACTCCTCCCAGGTCTTTCTGGTTCTCTACTTTACTGCTGCTAGAAACATGGTTCAGTCAGTCAGcagtgcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtacagacacgcacacacacactcaggtcaTGTGCGTTGGCTTTGTTACTCTTTCTGATTGTATAGCTGTAGTAGTATGCTTTCTCCAGGTAcagcaggagacaggagacagcaggagacaggagacatcaggagacaggagacatcaggagacaggagacagcaggaGACaggagacatcaggagacaggagacatcaGGAGACAGCAGGAGACACCAGGAGACAACAGGAGACATCCGGAGATAGAGGAAGGTATCCAAACTGCAGACCAATGAGGTCTCCATGAGACTGCAAGACAGAAGTCTCCAAACTGCAGTGTGGGAGCCAACAGGCTGCAGTAGGTAAGTTCTCTACCAGGCCTAAAGACAAAGGATTCCAGATTGCAGTGGGGAGCTGTCAGAGGGACATCTCCACCAGCCAGCTGCAGGCCACTAGAGGGAGGTCTCCAGACTGTGCAGTGGGCTGGCTGGGCCGGAGGATGCAGCTGATTTACTGGTGGTGTCGATGGTGAGGTTGATGCCGCTGTCGACGGCGTTGTTGTTCTTGTTGGGGGACTGGGGCTGGCTGCCTGTCTGGGGCTGGTGGGTGTTCCTCAGCGATGGGTCCTCCTCTAAGTCAGTGTCATCAATCAGGGGGATGTGGGGGGTGGAGTCCTCTATCCTAAACTCTGGGTGGGTCATGAAGTTGTGGATGGACGGTCTGGAGTCTGGTTTCTCAAGGCCTTCGTAGAGAGAGCTACGGAATGCGTTCACGACCCGAatctgtgtgtaggggggg
>TU1722049
CCACAGCACTTCCTACCGACCCACCCAATCAAATCattcaacaaaaaatgttttgaaaACAATTTAAATAAAAACGTTGGGGTAAAGTACATTCATGCAGGAGCgataaaaatgtttttatgtaATTCAAACTATTATTCATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTAGACTGGTTTTCACTCCTCCCAGGTCTTTCTGGTTCTCTACTTTACTGCTGCTAGAAACATGGTTCAGTCAGTCAGcagtgcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtacagacacgcacacacacactcaggtcaTGTGCGTTGGCTTTGTTACTCTTTCTGATTGTATAGCTGTAGTAGTATGCTTTCTCCAGGTAcagcaggagacaggagacagcaggagacaggagacatcaggagacaggagacatcaggagacaggagacagcaggaGACATGAGACAGCAGGAGACATGAGAcagcaggagacaggagacatcaggagacaggagacatcaggagacaggagacatcaGGAGACAGCAGGAGACACCAGGAGACAACAGGAGACATCCGGAGATAGAGGAAGGTATCCAAACTGCAGACCAATGAGGTCTCCATGAGACTGCAAGACAGAAGTCTCCAAACTGCAGTGTGGGAGCCAACAGGCTGCAGTAGGTAAGTTCTCTACCAGGCCTAAAGACAAAGGATTCCAGATTGCAGTGGGGAGCTGTCAGAGGGACACTGCTCTGCCAGAGGGACATCTCCAAAGCTGCAGAGGTCTCCACCAGCCAGCTGCAGGCCACTAGAGGGAGGTCTCCAGACTGTGCAGTGGGCTGGCTGGGCCGGAGGATGCAGCTGATTTACTGGTGGTGTCGATGGTGAGGTTGATGCCGCTGTCGACGGCGTTGTTGTTCTTGTTGGGGGACTGGGGCTGGCTGCCTGTCTGGGGCTGGTGGGTGTTCCTCAGCGATGGGTCCTCCTCTAAGTCAGTGTCATCAATCAGGGGGATGTGGGGGGTGGAGTCCTCTATCCTAAACTCTGGGTGGGTCATGAAGTTGTGGATGGACGGTCTGGAGTCTGGTTTCTCAAGGCCTTCGTAGAGAGAGCTACGGAATGCGTTCACGACCCGAatctgtgtgtaggggggg
>TU1722050
CCACAGCACTTCCTACCGACCCACCCAATCAAATCattcaacaaaaaatgttttgaaaACAATTTAAATAAAAACGTTGGGGTAAAGTACATTCATGCAGGAGCgataaaaatgtttttatgtaATTCAAACTATTATTCATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTAGACTGGTTTTCACTCCTCCCAGGTCTTTCTGGTTCTCTACTTTACTGCTGCTAGAAACATGGTTCAGTCAGTCAGcagtgcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtacagacacgcacacacacactcaggtcaTGTGCGTTGGCTTTGTTACTCTTTCTGATTGTATAGCTGTAGTAGTATGCTTTCTCCAGGTAcagcaggagacaggagacagcaggagacaggagacatcaggagacaggagacatcaggagacaggagacagcaggaGACaggagacatcaggagacaggagacatcaGGAGACAGCAGGAGACACCAGGAGACAACAGGAGACATCCGGAGATAGAGGAAGGTATCCAAACTGCAGACCAATGAGGTCTCCATGAGACTGCAAGACAGAAGTCTCCAAACTGCAGTGTGGGAGCCAACAGGCTGCAGTAGGTAAGTTCTCTACCAGGCCTAAAGACAAAGGATTCCAGATTGCAGTGGGGAGCTGTCAGAGGGACACTGCTCTGCCAGAGGGACATCTCCAAAGCTGCAGAGGTCTCCACCAGCCAGCTGCAGGCCACTAGAGGGAGGTCTCCAGACTGTGCAGTGGGCTGGCTGGGCCGGAGGATGCAGCTGATTTACTGGTGGTGTCGATGGTGAGGTTGATGCCGCTGTCGACGGCGTTGTTGTTCTTGTTGGGGGACTGGGGCTGGCTGCCTGTCTGGGGCTGGTGGGTGTTCCTCAGCGATGGGTCCTCCTCTAAGTCAGTGTCATCAATCAGGGGGATGTGGGGGGTGGAGTCCTCTATCCTAAACTCTGGGTGGGTCATGAAGTTGTGGATGGACGGTCTGGAGTCTGGTTTCTCAAGGCCTTCGTAGAGAGAGCTACGGAATGCGTTCACGACCCGAatctgtgtgtaggggggg
>TU1722051
CCACAGCACTTCCTACCGACCCACCCAATCAAATCattcaacaaaaaatgttttgaaaACAATTTAAATAAAAACGTTGGGGTAAAGTACATTCATGCAGGAGCgataaaaatgtttttatgtaATTCAAACTATTATTCATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTAGACTGGTTTTCACTCCTCCCAGGTCTTTCTGGTTCTCTACTTTACTGCTGCTAGAAACATGGTTCAGTCAGTCAGcagtgcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtacagacacgcacacacacactcaggtcaTGTGCGTTGGCTTTGTTACTCTTTCTGATTGTATAGCTGTAGTAGTATGCTTTCTCCAGGTAcagcaggagacaggagacagcaggagacaggagacatcaggagacaggagacatcaggagacaggagacagcaggaGAcaggagacaggagacatcaGGAGACAGCAGGAGACACCAGGAGACAACAGGAGACATCCGGAGATAGAGGAAGGTATCCAAACTGCAGACCAATGAGGTCTCCATGAGACTGCAAGACAGAAGTCTCCAAACTGCAGTGTGGGAGCCAACAGGCTGCAGTAGGTAAGTTCTCTACCAGGCCTAAAGACAAAGGATTCCAGATTGCAGTGGGGAGCTGTCAGAGGGACACTGCTCTGCCAGAGGGACATCTCCAAAGCTGCAGAGGTCTCCACCAGCCAGCTGCAGGCCACTAGAGGGAGGTCTCCAGACTGTGCAGTGGGCTGGCTGGGCCGGAGGATGCAGCTGATTTACTGGTGGTGTCGATGGTGAGGTTGATGCCGCTGTCGACGGCGTTGTTGTTCTTGTTGGGGGACTGGGGCTGGCTGCCTGTCTGGGGCTGGTGGGTGTTCCTCAGCGATGGGTCCTCCTCTAAGTCAGTGTCATCAATCAGGGGGATGTGGGGGGTGGAGTCCTCTATCCTAAACTCTGGGTGGGTCATGAAGTTGTGGATGGACGGTCTGGAGTCTGGTTTCTCAAGGCCTTCGTAGAGAGAGCTACGGAATGCGTTCACGACCCGAatctgtgtgtaggggggg
>TU1722053
CCACAGCACTTCCTACCGACCCACCCAATCAAATCattcaacaaaaaatgttttgaaaACAATTTAAATAAAAACGTTGGGGTAAAGTACATTCATGCAGGAGCgataaaaatgtttttatgtaATTCAAACTATTATTCATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTTAGATATAGTCATTGTTATTGTGGAGTAAGGTTAGGTTAGACTGGTTTTCACTCCTCCCAGGTCTTTCTGGTTCTCTACTTTACTGCTGCTAGAAACATGGTTCAGTCAGTCAGcagtgcgcacgcacacacacacacacacacacacacacacacacacacacacacacgcacacgcacacacacacacacacacacacacacacacacaggggagaaatatAAAACATCCAAACCGAACAATATCTAGAATTACATCCAGACGTGAAATAATTCCCTCTTTGCTCCCAGCCGTATGTTTTCAAGGCTTCAGTGATCAGGATCTGTTTTGGTCTCTTGTATTGGACTAAGTATCAGGTCAGGAAAAGCTTCAGTAAGCTTCAAGTGCTAACCTTTTCTGCGTCcccaatggaaccctattctctatgtagtgcactactttaggccaggacccatagggaatagggtgcactactttacaccaggacccatagggaatgtTCCTACCTGGATGGAGAAGGTTCTTACCTGGATGGCAAATGTTTCCTACCTGGATGGCGAATGTTTCCTACCTGGATGGCGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1722055 False 2082 lncRNA 0.42 4 92447734 92449941
TU1722049 False 1324 TUCP 0.49 2 92448586 92449941
TU1722050 False 1273 lncRNA 0.49 3 92448586 92449941
TU1722051 False 1225 lncRNA 0.50 3 92448586 92449941
TU1722053 True 830 lncRNA 0.42 3 92448586 92467632

Neighbor

gene id symbol gene type direction distance location
LOC110504503 LOC106566236 coding upstream 132662 92282926 ~ 92317484 (+)
LOC118940166 NA coding upstream 200638 92246394 ~ 92247096 (+)
LOC118940512 NA coding upstream 429534 92015537 ~ 92020588 (+)
LOC110519238 vgll4 coding upstream 435767 91915402 ~ 92011967 (+)
LOC110494826 LOC106601490 coding upstream 589104 91837358 ~ 91867163 (+)
LOC118940514 NA coding downstream 590066 93057698 ~ 93078808 (+)
LOC110494838 ippk coding downstream 632509 93100141 ~ 93131637 (+)
LOC110511384 ecm2 coding downstream 684594 93152226 ~ 93183983 (+)
LOC110494840 LOC106566248 coding downstream 758887 93226519 ~ 93242451 (+)
stab1 LOC106566251 coding downstream 826431 93294063 ~ 93442319 (+)
G1505923 NA non-coding upstream 1984 92445052 ~ 92445750 (+)
G1505943 NA non-coding upstream 52625 92393908 ~ 92395109 (+)
G1505922 NA non-coding upstream 76160 92370983 ~ 92371574 (+)
G1505880 NA non-coding upstream 180047 92267397 ~ 92267687 (+)
G1505975 NA non-coding downstream 10612 92478244 ~ 92479110 (+)
G1505989 NA non-coding downstream 29648 92497280 ~ 92498537 (+)
G1506012 NA non-coding downstream 72046 92539678 ~ 92540018 (+)
G1506018 NA non-coding downstream 84228 92551860 ~ 92565289 (+)
G1506055 NA non-coding downstream 150666 92618298 ~ 92618823 (+)
G1505894 NA other upstream 126957 92319545 ~ 92320777 (+)
G1503337 NA other upstream 2224075 90221545 ~ 90223659 (+)
G1503119 NA other upstream 2661580 89768557 ~ 89786154 (+)
LOC110493303 LOC106566213 other upstream 3333638 89106147 ~ 89150807 (+)
G1506406 NA other downstream 398574 92866206 ~ 92867034 (+)
G1506889 NA other downstream 1109185 93576817 ~ 93577604 (+)
G1507612 NA other downstream 1882581 94350213 ~ 94351111 (+)
G1508290 NA other downstream 2205931 94673563 ~ 94673937 (+)
G1508614 NA other downstream 2613772 95081404 ~ 95082050 (+)

Expression


Co-expression Network