G1505975


Basic Information

Item Value
gene id G1505975
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 92478244 ~ 92479110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1722111
CTGTGTGATGCAGGCCCCAGTGAAGGCCACTATGACAGCCACCACGTTGACAGTCAGCTGGAACTGGAGGAACTTGGAGATGCTGTCGTAGACGTTCCTCCCCCACATCACAGCCTTCACTATGCTACTGAAGTTATCGTCCGTTAATATGATGTCAGACGCCTCCTTGGCCACGTCTGTACCGGCTATACCCTGCAGAGAGAAGAGGTATGGTTTAATACCGGCtgaaccctgcagagagagaagaggtatggtttaataccggctgaaccctgcagagagagaagaggtatggtttaataccggctgaaccctgcagagagaagaggtatggtttaatacctgctgaaccctgc

Function

NR:

description
plasma membrane calcium-transporting ATPase 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1722111 True 356 lncRNA 0.51 3 92478244 92479110

Neighbor

gene id symbol gene type direction distance location
LOC110504503 LOC106566236 coding upstream 163172 92282926 ~ 92317484 (+)
LOC118940166 NA coding upstream 231148 92246394 ~ 92247096 (+)
LOC118940512 NA coding upstream 460044 92015537 ~ 92020588 (+)
LOC110519238 vgll4 coding upstream 466277 91915402 ~ 92011967 (+)
LOC110494826 LOC106601490 coding upstream 619614 91837358 ~ 91867163 (+)
LOC118940514 NA coding downstream 578588 93057698 ~ 93078808 (+)
LOC110494838 ippk coding downstream 621031 93100141 ~ 93131637 (+)
LOC110511384 ecm2 coding downstream 673116 93152226 ~ 93183983 (+)
LOC110494840 LOC106566248 coding downstream 747409 93226519 ~ 93242451 (+)
stab1 LOC106566251 coding downstream 814953 93294063 ~ 93442319 (+)
G1505924 LOC106566233 non-coding upstream 10612 92447734 ~ 92467632 (+)
G1505923 NA non-coding upstream 32494 92445052 ~ 92445750 (+)
G1505943 NA non-coding upstream 83135 92393908 ~ 92395109 (+)
G1505922 NA non-coding upstream 106670 92370983 ~ 92371574 (+)
G1505989 NA non-coding downstream 18170 92497280 ~ 92498537 (+)
G1506012 NA non-coding downstream 60568 92539678 ~ 92540018 (+)
G1506018 NA non-coding downstream 72750 92551860 ~ 92565289 (+)
G1506055 NA non-coding downstream 139188 92618298 ~ 92618823 (+)
G1506076 NA non-coding downstream 183228 92662338 ~ 92662813 (+)
G1505894 NA other upstream 157467 92319545 ~ 92320777 (+)
G1503337 NA other upstream 2254585 90221545 ~ 90223659 (+)
G1503119 NA other upstream 2692090 89768557 ~ 89786154 (+)
G1506406 NA other downstream 387096 92866206 ~ 92867034 (+)
G1506889 NA other downstream 1097707 93576817 ~ 93577604 (+)
G1507612 NA other downstream 1871103 94350213 ~ 94351111 (+)
G1508290 NA other downstream 2194453 94673563 ~ 94673937 (+)
G1508614 NA other downstream 2602294 95081404 ~ 95082050 (+)

Expression


Co-expression Network