Gene
RNA
| Item | Value |
|---|---|
| gene id | G1507988 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 94152377 ~ 94152677 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrotransposable element Tf2 protein type 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1724623 | True | 220 | lncRNA | 0.55 | 2 | 94152377 | 94152677 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494853 | timp4 | coding | downstream | 10885 | 94083869 ~ 94141578 (-) |
| LOC110494844 | slmap | coding | downstream | 461682 | 93577689 ~ 93690695 (-) |
| LOC118940515 | NA | coding | downstream | 579569 | 93567815 ~ 93572808 (-) |
| LOC110494848 | pdhb | coding | downstream | 595034 | 93531690 ~ 93557343 (-) |
| LOC110493308 | NA | coding | downstream | 649112 | 93500200 ~ 93529938 (-) |
| LOC110494846 | LOC106566275 | coding | upstream | 104474 | 94257151 ~ 94321686 (-) |
| isy1 | isy1 | coding | upstream | 171044 | 94323721 ~ 94355073 (-) |
| LOC110494858 | LOC106566283 | coding | upstream | 211090 | 94363767 ~ 94392932 (-) |
| acad9 | acad9 | coding | upstream | 331604 | 94484281 ~ 94519204 (-) |
| LOC118940516 | NA | coding | upstream | 704541 | 94851926 ~ 94861352 (-) |
| G1507875 | NA | non-coding | downstream | 209137 | 93942966 ~ 93943240 (-) |
| G1507863 | NA | non-coding | downstream | 211624 | 93895483 ~ 93940753 (-) |
| G1507864 | NA | non-coding | downstream | 223011 | 93898002 ~ 93929366 (-) |
| G1507871 | NA | non-coding | downstream | 234651 | 93913939 ~ 93917726 (-) |
| G1507961 | timp4 | non-coding | upstream | 29583 | 94164090 ~ 94198079 (-) |
| G1508008 | NA | non-coding | upstream | 33607 | 94186284 ~ 94188649 (-) |
| G1508035 | NA | non-coding | upstream | 92419 | 94245096 ~ 94246501 (-) |
| G1508038 | NA | non-coding | upstream | 97020 | 94249697 ~ 94251984 (-) |
| G1508058 | NA | non-coding | upstream | 129314 | 94281991 ~ 94387482 (-) |
| G1507093 | NA | other | downstream | 745165 | 93406293 ~ 93407212 (-) |
| G1506957 | NA | other | downstream | 1063669 | 93085682 ~ 93088708 (-) |
| G1506965 | NA | other | downstream | 1108012 | 93043731 ~ 93044365 (-) |
| G1506543 | NA | other | downstream | 1288403 | 92863102 ~ 92863974 (-) |
| phf2 | phf2 | other | upstream | 708949 | 94861445 ~ 94996238 (-) |
| G1508667 | NA | other | upstream | 912968 | 95065645 ~ 95067363 (-) |
| G1508666 | NA | other | upstream | 918305 | 95070982 ~ 95080563 (-) |
| LOC110493309 | LOC106566266 | other | upstream | 1008708 | 95160687 ~ 95164816 (-) |
