G1507961 (timp4)


Basic Information

Item Value
gene id G1507961
gene name timp4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 94164090 ~ 94198079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1724595
aaaGAGTGAgtctgaaaaagagagagacagagatataggtggtagtagcagcagattctgaacataacagtcagtagtaATGAGGTTGTTTCTCTAGCAACCTCTCATCTCTCATACAGGACTGATAGATGAAATAGATTGATACTGTGTTGTTCCTCCAGGGGAAATCCAGTCAGGACCAGAAAAAGTGGGAGCTCTGTAGACAGCTTATGTAGACAGACAGCTGATCTCTATAGATTTCCAGGTTAGTCAGGTCAGTCTCTCTGAGATAGAATCTCTTCTACAAGAGGGACCAGGGAAGTGAAAAAGAAGGCGCTGATCTGAAGAGAGGAGTCTTTCTggtcggtgagagagagagagagagatgggcatcCCCCTGCCTGGTTGTGTGTCCCTGACCCCCCTGGTCTTGACCCTGACCCTCACCCTGCTGCTGGCCCTCAGACTGGACCACCTGGTGGAAGCATGCAGCTGCAACCCAGCCCACCCCCAGCAACACTTCTGCAGCGCTGAGATAGTGATCAGAGCAAAGATCTCTGGGGAAAAGGTTGTGTCTCCTAGCAACAGCACTTCTCCTTACCTGAAGATGATCCAATATGAGATCAAACTGATCAAGGTGAGTCCAGTAGAACCTTGGTCTTGTATCTACATCTTTATCTACAGTAGAACCCTGGTCCTGTATCTACAGCTCTATCTAAAGTAGAATCTTGGTCCTGTTTCTACAGCCTTATCTACAGTAGAAACTTGGTCCTGTATCTACAGCTCTATCTAAAGTAGAACCTTGGTCCTATATCTACAGCTCTAAAGTAGAATCTTGGTCCTGGATCTACAGCTTTATCTACAGTAGAACCTTGGTCCTGTATCTATAGCTCTTTCTGAAGTAGAACCTTGGTGCTGTATCTACAGCTTTATCTAGGGTAGAACCTTGGTCCTATATCTACAGCTCTATCTAAAGTAGAACCTTTGTCCTGTATCTACAGCTTGATCTACAGTAGAACCTTGGTCCTATATCTACAGCTTTATCTACAGTAGAACC
>TU1724596
aaaGAGTGAgtctgaaaaagagagagacagagatataggtggtagtagcagcagattctgaacataacagtcagtagtaATGAGGTTGTTTCTCTAGCAACCTCTCATCTCTCATACAGGACTGATAGATGAAATAGATTGATACTGTGTTGTTCCTCCAGGGGAAATCCAGTCAGGACCAGAAAAAGTGGGAGCTCTGTAGACAGCTTATGTAGACAGACAGCTGATCTCTATAGATTTCCAGGTTAGTCAGGTCAGTCTCTCTGAGATAGAATCTCTTCTACAAGAGGGACCAGGGAAGTGAAAAAGAAGGCGCTGATCTGAAGAGAGGAGTCTTTCTggtcggtgagagagagagagagagatgggcatcCCCCTGCCTGGTTGTGTGTCCCTGACCCCCCTGGTCTTGACCCTGACCCTCACCCTGCTGCTGGCCCTCAGACTGGACCACCTGGTGGAAGCATGCAGCTGCAACCCAGCCCACCCCCAGCAACACTTCTGCAGCGCTGAGATAGctatctgcacacctggtcctgatcatctctcctcttcataagcccggacctgacatccattccctgccggatcgttagccatgaacattactcacccggatcatttaccccattcccgcctggtcgtcagaagattccgcttccccattggatccacctatttactcccatcaactcatcaccgctacccgctacaccacctggatatatctacccattcacttattCGAACATGACACGCAGGTTGAAGAGAAAGGCAGTTCCAGAGGGTTGTTTTCAGAACAGGCTGAACAGGGGTTCAAGGTTGAAGAGAGGCTACATTCGGGACAGTTCCAGAgtccactttaaacaatgccacttttatatgtttacacaccctacattactcttcttatatgtgtatatactgtactcgataccatctactgcatcttgcctatgctgttctgtaccatcactcattcatatatttttatgtacatattcttcatccctttacacttg

Function

symbol description
timp4 Predicted to enable metalloendopeptidase inhibitor activity and protease binding activity. Predicted to be involved in negative regulation of proteolysis; response to cytokine; and response to hormone. Predicted to act upstream of or within Notch signaling pathway. Predicted to be located in sarcomere. Predicted to be active in extracellular matrix and extracellular space. Implicated in nephroblastoma. Biomarker of ductal carcinoma in situ; female reproductive organ cancer (multiple); prostate carcinoma in situ; and renal cell carcinoma.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1724595 False 1036 TUCP 0.45 2 94164090 94198079
TU1724596 True 1022 lncRNA 0.47 4 94182260 94198079

Neighbor

gene id symbol gene type direction distance location
LOC110494853 timp4 coding downstream 40768 94083869 ~ 94141578 (-)
LOC110494844 slmap coding downstream 491565 93577689 ~ 93690695 (-)
LOC118940515 NA coding downstream 609452 93567815 ~ 93572808 (-)
LOC110494848 pdhb coding downstream 624917 93531690 ~ 93557343 (-)
LOC110493308 NA coding downstream 678995 93500200 ~ 93529938 (-)
LOC110494846 LOC106566275 coding upstream 59072 94257151 ~ 94321686 (-)
isy1 isy1 coding upstream 125642 94323721 ~ 94355073 (-)
LOC110494858 LOC106566283 coding upstream 165688 94363767 ~ 94392932 (-)
acad9 acad9 coding upstream 286202 94484281 ~ 94519204 (-)
LOC118940516 NA coding upstream 659139 94851926 ~ 94861352 (-)
G1507988 NA non-coding downstream 29583 94152377 ~ 94152677 (-)
G1507875 NA non-coding downstream 239020 93942966 ~ 93943240 (-)
G1507863 NA non-coding downstream 241507 93895483 ~ 93940753 (-)
G1508035 NA non-coding upstream 47017 94245096 ~ 94246501 (-)
G1508038 NA non-coding upstream 51618 94249697 ~ 94251984 (-)
G1508058 NA non-coding upstream 83912 94281991 ~ 94387482 (-)
G1508100 NA non-coding upstream 172535 94370614 ~ 94372203 (-)
G1508101 NA non-coding upstream 173460 94371539 ~ 94372397 (-)
G1507093 NA other downstream 775048 93406293 ~ 93407212 (-)
G1506957 NA other downstream 1093552 93085682 ~ 93088708 (-)
G1506965 NA other downstream 1137895 93043731 ~ 93044365 (-)
G1506543 NA other downstream 1318286 92863102 ~ 92863974 (-)
phf2 phf2 other upstream 663547 94861445 ~ 94996238 (-)
G1508667 NA other upstream 867566 95065645 ~ 95067363 (-)
G1508666 NA other upstream 872903 95070982 ~ 95080563 (-)
LOC110493309 LOC106566266 other upstream 963306 95160687 ~ 95164816 (-)
G1507864 NA non-coding downstream 234724 93898002 ~ 93929366 (-)

Expression


Co-expression Network