XLOC_003417


Basic Information

Item Value
gene id XLOC_003417
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21612671 ~ 21759025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008592
AATTGGCCAACTTTTGTAAGTAAACGAGTTTCGATGATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGGTAAAGGCCCTTTGTCATGCATAAGCACACACAAGCAgcccttgtttattttattgaatgtttatttcattttttaacgtGCCACTCAAGACTCTGAGCAGACACATGTGTACCTTTCCTCCTCCCATGTAAACACAGCATATTTCGCCACTCATTTCCCGCTGTAAAAAGTTTATATCTGTAATCTGTTAAGtcagatattttaaacaacatCTCGCCATGTTTATAAATACTGCCGTGGCGCTGTAATGAATTTAcggtaatgtgttttttttttttttgtcttcactaTCACTTCGACAAATGAAAATCCTGTGTTTGagtttgaaatgaaaacaaaacaaaacgacaGGAATAGAAAATGTTGGTGTGATGGAGAAAAAACAACACGAGTG
>TCONS_00006685
AATTGGCCAACTTTTGTAAGTAAACGAGTTTCGATGATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGCTTTCTTGATCAAGGCcatctttccttgtctttggcctATAAGGAGATCTCCAGCACCTGGCAGACCACGTCACATGAGCGCTACATGCTGACAGCTAACCAGCTATTATCTTAAAAGAATCAAACGAATGTTCAAAGCCCTCGCCGGGCATGAAACATGAAAGGAGACGTCAGCCGCTGGCAGCTGACAAGCCAGGAGGAGAGCCAAGGAGCGCACGAGGAAGACGGAGAAAAAGGAAAGACAAAGCGGGGAACAGAGATCTTTATTTTCATTCTACTACAGGGAGTTTTGACAAACTGATCCCACAGCCCGAACACTAGATGTTACTAGAACAACACAACACAATGGCGTGTTTATATTGTGGGAAATGGCACAGatgaaaggagagagagagaaagggatgGGGTGGAGGGATGAGATGCACAAAACTGGCTGTTTTCAAATTCAACTTCAGATGTGGAGCTGGCTGAATGAGTAGTCGGTATTAGGGAGGCAGTGTTTAATTAGGGTGCTTTTGGTTTGAAGACCCTCTGGGGGCTATAAAGGGGTCGGTGCAGAAGAAATTTAGTGGTTAATGATAATGTTCAAATAAGTTGGAATGTACAAGATTTGACTTTATTATGGATTCATTCTGCCTTAGGAAAATACATGAGATTTAAACACACTTAATGCATTTTGGTTTCATTCTAGATAGTGTATATATCATGTCAATAGTTATTCCAATTACTATTAAAATGTGTTGGGGTCTTAAATGAAAtctgtttcttcttttttctttcgaTTTCCATTGTAATATTCTTGAAGTAC
>TCONS_00008593
AATTGGCCAACTTTTGTAAGTAAACGAGTTTCGATGATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGGTTGTGAAGGAGTTAAGTCTGTGTTTGGTGTTTGAGGAAGCAGTGGGGCGTTACTGTGCTGTCCGACCCCCTCATGGCCCCGGTTCTGCCTGGAAAGTGCTGCACGGGCCTTTGCCTGGGTCACCTGCAAAGGATTAGGCTGTGGCGGGTGGACAGTTGTTGTTTGAGG
>TCONS_00008594
TTTCGATGATTCGACAGTGCGCATGCGCATCTTCAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGCTTTCTTGATCAAGGCcatctttccttgtctttggcctATAAGGAGATCTCCAGCACCTGGCAGACCACGTCACATGAGCGCTACATGCTGACAGCTAACCAGCTATTATCTTAAAAGAATCAAACGAATGTTCAAAGCCCTCGCCGGGCATGAAACATGAAAGGAGACGTCAGCCGCTGGCAGCTGACAAGCCAGGAGGAGAGCCAAGGAGCGCACGAGGAAGACGGAGAAAAAGGAAAGACAAAGCGGGGAACAGAGATCTTTATTTTCATTCTACTACAGGGAGTTTTGACAAACTGATCCCACAGCCCGAACACTAGATGTTACTAGAACAACACAACACAATGGCGTGTTTATATTGTGGGAAATGGCACAGatgaaaggagagagagagaaagggatgGGGTGGAGGGATGAGATGCACAAAACTGGCTGTTTTCAAATTCAACTTCAGATGTGGAGCTGGCTGAATGAGTAGTCGGTATTAGGGAGGCAGTGTTTAATTAGGGTGCTTTTGGTTTGAAGACCCTCTGGGGGCTATAAAGGGGTCGGTGCAGAAGAAATTTAGTGGTTAATGATAATGTTCAAATAAGTTGGAATGTACAAGATTTGACTTTATTATGGATTCATTCTGCCTTAGGAAAATACATGAGATTTAAACACACTTAATGCATTTTGGTTTCATTCTAGATAGTGTATATATCATGTCAATAGTTATTCCAATTACTATTAAAATGTGTTGGGGTCTTAAATGAAAtctgtttcttcttttttctttcgaTTTCCATTGTAATATTCTTGAAGTAC
>TCONS_00008595
ATTCGACAGTGCGCATGCGCATCTTCAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGCTTTCTTGATCAAGGCcatctttccttgtctttggcctATAAGGAGATCTCCAGCACCTGGCAGACCACGTCACATGAGCGCTACATGCTGACAGCTAACCAGCTATTATCTTAAAAGAATCAAACGAATGTTCAAAGCCCTCGCCGGGCATGAAACATGAAAGGAGACGTCAGCCGCTGGCAGCTGACAAGCCAGGAGGAGAGCCAAGGAGCGCACGAGGAAGACGGAGAAAAAGGAAAGACAAAGCGGGGAACAGAGATCTTTATTTTCATTCTACTACAGGGAGTTTTGACAAACTGATCCCACAGCCCGAACACTAGATGTTACTAGAACAACACAACACAATGGCGTGTTTATATTGTGGGAAATGGCACAGatgaaaggagagagagagaaagggatgGGGTGGAGGGATGAGATGCACAAAACTGGCTGTTTTCAAATTCAACTTCAGATGTGGAGCTGGCTGAATGAGTAGTCGGTATTAGGGAGGCAGTGTTTAATTAGGGTGCTTTTGGTTTGAAGACCCTCTGGGGGCTATAAAGGGGTCGGTGCAGAAGAAATTTAGTGGTTAATGATAATGTTCAAATAAGTTGGAATGTACAAGATTTGACTTTATTATGGATTCATTCTGCCTTAGGAAAATACATGAGATTTAAACACACTTAATGCATTTTGGTTTCATTCTAGATAGTGTATATATCATGTCAATAGTTATTCCAATTACTATTAAAATGTGTTGGGGTCTTAAATGAAAtctgtttcttcttttttctttcgaTTTCCATTGTAATATTCTTGAAGTAC
>TCONS_00008596
ATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGGTGTCGACGGACTCCAGATCTCTCATTTCCCCAGGAATAAAGCCCCTCGACCCCCTCCTTCTGCCACTCAGCTCTCGCTCCGGTATGACGCTGCTCTGTCCGAGACTTTATCCATTAGATAGATaaatctctttttctttttctgtcgTGCCAATGTCCATTTGCCGTGTCCCACACTCGAAAGTTATTACTAACCTCAGAACAAGAGCACCGTGCAATCTACCAAAAAGCTAGGGAGCTCCTTATCTGTCTGctttatggccacagtgtaatagATCAATCGAAGAAGTTAACTGGAAAGAAAGGAGCTGCTTTTGGCCTCATGTAACCCCTATAATGCCAACAATGTCTCTGTCCGCAAAAGTCCATGAGACGTCACGCTGTGATAAAGGTGTGTGCGAGAGAAAGAGAAATAGAGATACTCTCACGGTGTCATTTAATTTGAGGACAGCGAGATATTGGAGAAATCAAAGAGAAATTGAAAGTCAGTTTCCAGCTGTCAAGACTGATGCCGTTTTATATTCATCTGGTCATTTGTGCAGTCTTTTTGAGGAGAAAGGTACCTGTCACATATTTACAAATGAACAAATAGGGTTATGTTTAAGTCATAGTGAACTGGAATATGATTACTGAggctaatgactgattaaaatcattattaaaatgttaaaatataatgtttatgaaaatatataatattttaaaatgaaatcattaatattaatagatAATGGTTTATTGTTGTTGccgtttttataaataaattatgttttta
>TCONS_00008598
ATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGAATGTCCCCATTGGGCTGGCTGGAGGAGAagaggagggaaaaaaaacaaaaaaagcagtgGATTGGGGACCTTGCTTTCTCGCAGCAGAAATGTCAGGGAGACATTAAACAGTGAAAAGCTGGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGgAACTATTCTTCgccggactcaaaccccgttgtcagggtcaacttctctctgcgtctcaaatctgCCAACGTACGTGGCGAGCTACTggccaa
>TCONS_00008597
ATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGgAACTATTCTTCgccggactcaaaccccgttgtcagggtcaacttctctctgcgtctcaaatctgCCAACGTACGTGGCGAGCTACTggccaa
>TCONS_00008599
TACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGGTAAAGGCCCTTTGTCATGCATAAGCACACACAAGCAgcccttgtttattttattgaatgtttatttcattttttaacgtGCCACTCAAGACTCTGAGCAGACACATGTGTACCTTTCCTCCTCCCATGTAAACACAGCATATTTCGCCACTCATTTCCCGCTGTAAAAAGTTTATATCTGTAATCTGTTAAGtcagatattttaaacaacatCTCGCCATGTTTATAAATACTGCCGTGGCGCTGTAATGAATTTAcggtaatgtgttttttttttttttgtcttcactaTCACTTCGACAAATGAAAATCCTGTGTTTGagtttgaaatgaaaacaaaacaaaacgacaGGAATAGAAAATGTTGGTGTGATGGAGAAAAAACAACACGAGTG
>TCONS_00008399
GATGTTCAGGTTTAAAGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGGTGTCGACGGACTCCAGATCTCTCATTTCCCCAGGAATAAAGCCCCTCGACCCCCTCCTTCTGCCACTCAGCTCTCGCTCCGGTATGACGCTGCTCTGTCCGAGACTTTATCCATTAGATAGATaaatctctttttctttttctgtcgTGCCAATGTCCATTTGCCGTGTCCCACACTCGAAAGTTATTACTAACCTCAGAACAAGAGCACCGTGCAATCTACCAAAAAGCTAGGGAGCTCCTTATCTGTCTGctttatggccacagtgtaatagATCAATCGAAGAAGTTAACTGGAAAGAAAGGAGCTGCTTTTGGCCTCATGTAACCCCTATAATGCCAACAATGTCTCTGTCCGCAAAAGTCCATGAGACGTCACGCTGTGATAAAGGTGTGTGCGAGAGAAAGAGAAATAGAGATACTCTCACGGTGTCATTTAATTTGAGGACAGCGAGATATTGGAGAAATCAAAGAGAAATTGAAAGTCAGTTTCCAGCTGTCAAGACTGATGCCGTTTTATATTCATCTGGTCATTTGTGCAGTCTTTTTGAGGAGAAAGGTACCTGTCACATATTTACAAATGAACAAATAGGGTTATGTTTAAGTCATAGTGAACTGGAATATGATTACTGAggctaatgactgattaaaatcattattaaaatgttaaaatataatgtttatgaaaatatataatattttaaaatgaaatcattaatattaatagatAATGGTTTATTGTTGTTGccgtttttataaataaattatgttttta

Function

GO:

id name namespace
GO:0071932 replication fork reversal biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000725 recombinational repair biological_process
GO:0061980 regulatory RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008592 False 922 lncRNA 0.41 3 21612671 21627413
TCONS_00006685 False 1335 lncRNA 0.43 5 21612671 21672419
TCONS_00008593 False 696 lncRNA 0.48 4 21612671 21711321
TCONS_00008594 False 1094 lncRNA 0.44 5 21612699 21672419
TCONS_00008595 False 1075 lncRNA 0.43 5 21612707 21672419
TCONS_00008596 False 1266 lncRNA 0.41 4 21612707 21741244
TCONS_00008598 False 584 lncRNA 0.47 4 21612707 21759025
TCONS_00008597 False 461 lncRNA 0.47 3 21612707 21759025
TCONS_00008599 False 693 lncRNA 0.40 2 21612777 21627413
TCONS_00008399 True 919 lncRNA 0.40 3 21612931 21741244

Neighbor

gene id symbol gene type direction distance location
XLOC_003416 FAM72B coding upstream 14144 21586335 ~ 21598527 (+)
XLOC_003415 NA coding upstream 203837 21406687 ~ 21408834 (+)
XLOC_003414 NA coding upstream 305909 21302712 ~ 21306762 (+)
XLOC_003413 BX321912.1 coding upstream 425987 21185469 ~ 21186684 (+)
XLOC_003412 il10 coding upstream 473168 21137948 ~ 21139503 (+)
XLOC_003419 NA coding downstream 143652 21902677 ~ 21903694 (+)
XLOC_003420 foxp4 coding downstream 151318 21910343 ~ 22094392 (+)
XLOC_003421 MDFI coding downstream 350862 22109887 ~ 22169026 (+)
XLOC_003422 ppfia4 coding downstream 615394 22374419 ~ 22584452 (+)
XLOC_003423 BX537143.1 coding downstream 837701 22596726 ~ 22599593 (+)
XLOC_003369 CR854846.2 misc upstream 5489589 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 8900675 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 8918408 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 8927072 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 8932643 12679732 ~ 12680028 (+)
XLOC_003409 CU459075.1 non-coding upstream 560327 21052228 ~ 21052344 (+)
XLOC_003407 NA non-coding upstream 682347 20928241 ~ 20930324 (+)
XLOC_003425 CU861893.1 non-coding downstream 954990 22714015 ~ 22714131 (+)
XLOC_003426 NA non-coding downstream 1161444 22920469 ~ 22927188 (+)
XLOC_003428 BX571675.1 non-coding downstream 1638245 23397270 ~ 23397385 (+)

Expression


Co-expression Network