LOC110517047 (LOC106574932)


Basic Information

Item Value
gene id LOC110517047
gene name LOC106574932
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 1803391 ~ 2339987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951469.1
ACAACTTCTGGTGGCGCGGTTTTCGGactgaacattttttttttacagtcagAAGTTTGAGCTGTAAAAATATCAACTCGCTTTAACGTTGTCTGATAGCTTAACTGACTTTGTCAACATCGTTTTGCAAATATTTCAACAATAGTATTCAAGAAAACGTGTTGATAACAGTAGTTTATCTTTTCTATACGTCTTGGAAGGCAAACTACCTGAAAAGCCACAAATAGGATTAAGGCAATCCGACCGTGATAGTTAGCTAGCTCGTTAGCATCTTTGAAGGCGtcgcttttctctctctgtcctcgttATCACATTGTCTGTTTGTACCCGATATCAGGTTAAAGTAACTTTCCACCAATAATCTCTTTTGTTAACAAACCGTATTGTATGTTTCgccgtttttttttgttgcaaaggTCGGGTACAGTAGTGACAGTGAGTAGCCCAGCTAAGCTACTGTAGTTATCATGGAGAACCATTGGAGTAATCTTCAGTCCAGTGGACGAGACAAACAGCGAAAGAAGGGATTCACCGCAGGACAAGGTGGATCGTCTGGAGGCGAGGATGGAGACCGTAAACCAAAGTTTcATTTACAGGTTAAAAACATGAAGGATGATATGATGGACAGGTTCGCCAGTATCCGTATCCCAGGCAGTAAGAAAGAGCGTCCTCACCTCCCTCATGTCAAACACTCCTCCTCGTCTGAATGGTCTTCCTCCTCCGCTGAGTTTGAGGACCTGTCTTCCAAGATCACCTCAGAACAGGAGATACTGGGCCTCTTCGAGAAGATGATGgagGATATGAACCTGAATGATGACAAGAAGGCTCCTCTGAGAGAGAAAGATCTGACCACCAAGAGAGAGATGGTTATCCAGTACATTGTTACTGCCTCCAAAACAggCAGTGTGTGTAGCAGTCATCAGATTTCCCCTCAGGAGTTCCTGGGGGAGTTAAAGTCAGGGGTGACTGACGAACGCCTCATGGCCTGTCTGGACTCTCTCCGTGTCTCCCTCACCAGCAACCCTGTCAGCTGGGTGCAGAGCTTTGGCCACGAGGGTCTGGGACTGCTGCTAGACATTCTGGAGAAGCTGCTTCACAAGAAacaCCAGGACAAACCTGACAAGAAGAGCCAGCATAAAGTCATCCAGTGCCTCAAAGCCTTCATGAACAACAAGTATGGGTTGGAGCGTATCCTGTCAGAGGAGAAGTGCCTGACCCTGTTGGCCCGAGCTATCGACCCCACCCAGCCTGCCATGATGACGGACGTGGTCAAGCTGCTGTCAGCCATCTGCATTGTGGGCGAGGAGAACACTTTGGAGAAGGTCCTTGAAGCCGTCACCACGGCGGGAGAACACAGGGCCACGGAGAGGTTCAGTCCAATCGTAGAAGGACTCAGAGATCGCTCCGTCCAATTACAAGTGGCCTGCATGCAGCTCATCAATGCTCTGGTGACGTCTCCAGACGAGCTGGACTTCAGGCTTCACATCAGGAATGAGTTTATTCGCTCCGGCCTCAGAGAGATTTTACCGCATCTGACAACGATCAGGAACGATGCCCTGGACATTCAGCTCAAGGTGTTTGAGGAGCACAAGGAAGAGGATCTGATGGAGCTCAGTCACCGGCTGGAGGACATCAAGAGTGAACTGGATGATGTGGGAGATGTGTTCAACGTGGTTCAGAGTATGGTGAAGGACACCGGAGCCGAGGTCTACTTCCTCTCCATCCTACAACACCTAATGCTCATCCGGAACGACTACTTTGTCCGgcccCAGTATTTTAAGATCATAGAAGAGTGTTTATCTCAGATCGTTCTCCATCGCAGTGGGACCGACCCAGACTTCAGCTACCGAAAACGCCTTGACGTGGACTTCAGTGTCCTCCTGGacgtGTGTGTGGACAAGGCTCAGGTAGAAGAGTGTGAGCTGAGAGCTGCTGACTTGGCTCTGAAgttTGACGAGGAGTACCTGGGTCGACAGGAGGCTCAGGCTCAGCTGCTTAAGAGTGAAGAGAAGATCAATGAATTGCAGGCAGAGCTACTTGCCTTCAAGTCCCAGTTTGGAGCGGTCCCAGTGGCCCTCTCCTCCGCCCGTCCTTCCCTCCCTCCGCCTCCTTCTGGTCCGGGAGGTCCCatgcctcctccccctcctcctccccccctcccagGCTGCGGCCCACCTCCCCCACCAGGAGTGCCTCCCCCGTTCGGttgtccccctccccctcctcctcccccgggGTTCTGTGGGCTGGGCTCGCCTACCCACAACACCTTGCCTTTCGGACTCCGGCCCAAGAAGGAGTTCAAGCTTGAGACTTCCATGAAGCGCCTCAACTGGTCCAAGatcCGCCCCCAGGAGATGTCCGAGAGCTGTTTCTGGGTGGTGGCTAACGAGGATCGCTATGACAACCCTGACCTGCTCAACAGACTGGCGCACACCTTTGGCTCATACAGACCAGCCGTCCAGGATGAACAGGGTCTGGAAGCAAAGAGATCCATCAAGAAGAGGATCAAACAACTGAAGGTGCTCGACCCAAAGATCGCCCAGAACCTCTctATCTTCCTGGGGTCCTTCAGGATGCCTTACCAGGAGATCAGACGAGCCATCCTAGAGGTCGACGAGGAGCAGCTCACTGAACCAATGATACAGaacttGGTTAAACACCTTCCTGAGCAGGAGCAGCTGAATGCTTTGATGAAGTTTCAGAATGACTACAACAGTCTGTCTGAGCCTGAGCAGTTTGGAGTGGTGatgAGCAGTGTGAAGCGACTGCGTCCCCGTCTCAACTCCATCCTGTTTAAGCTGCAGTTTGATGAACAGGTCAACAACCTCCGTCCAGACATCATGGCTGTTAACGCAGCCTGTGAAGAGgTGAGGAAGAGCAAGGGGTTCAGCCGGCTGCTGGAGCTGGTTCTTCTGCTGGGCAACTACATGAACGCAGGCTCTCGCAACGCACAGAGCTACGGCTTTGACCTCGGTTCCCTCTGCAAGCTGAAGGACACGAAGTCAGCTGACCAGAAGTCAACGTTACTACACTTCCTGGCTGCGGTGTGTGAGGAGGAGTTCCCAGAGGTCACCAAGTTTTCAGACGACCTACAGCACGTTGACAGAGCCAGccgagtctcAGCGGAGTCCCTGGAGAAGAACCTAGTTCAGATGGAGAGACAGCTGGTCCAACTAGAGAGAGATCTGgacaccttctcctctcctgacGACTCTGAAGATCTCTTCACTGCCAAGATGTCTAGCTTCTCCACGTCGGCCAGAGAGCAGTACCAGAAGCTGATGATCATGCACGGCAACATGGGAACCCTCTATCAGAACATGCTGGACTACTTCGCTATGGACTCCAAGAAGACGTCCGTGGAGGAATTATTCACAGACCTCAGCAACTTCAGAACCATGTTCCTGCAAGCGCTGAAGGAGAacgtgaggaggagagaggcggaggagaaacagaggagagcgTGGGTGGCCAAGgagaaggcggagagagagaagcaggagagacagcagcagaagaagaagagactGCTGGAGGTCAACGCAGagAACAGCGATGAGACAGGAGTGATGGATAGTTTGCTGGAGGCTTTGCAGTCTGGAGCAGCGTTCAGAGACCGTCGGAAGAGAGCGCCCCGGCCCCGAGATGGTCAGATGAGCCTCAGTCCCAGTTCATACCTCCAGGTTCTGAAGCCCTGTAACCATGGTAACGACAACCCAGCCTCCGTCGCAGAgcgtgttctgtctgtctgtctgtctgctaacagCCGTAAACCAGAACCATGTATTTAAAATAGAGCAAATGAAATGTTTCGAAACAGAACGGTTCTTTC
>TU1727632
GACAGTGAGTAGCCCAGCTAAGCTACTGTAGTTATCATGGAGAACCATTGGAGTAATCTTCAGTCCAGTGGACGAGACAAACAGCGAAAGAAGGGATTCACCGCAGGACAAGGTGGATCGTCTGGAGGCGAGGATGGAGACCGTAAACCAAAGTTTATGGACAGGTTCGCCAGTATCCGTATCCCAGGCAGTAAGAAAGAGCGTCCTCACCTCCCTCATGTCAAACACTCCTCCTCGTCTGAATGGTCTTCCTCCTCCGCTGAGTTTGAGGACCTGTCTTCCAAGATCACCTCAGAACAGGAGATACTGGGCCTCTTCGAGAAGATGATGgagGATATGAACCTGAATGATGACAAGAAGGCTCCTCTGAGAGAGAAAGATCTGACCACCAAGAGAGAGATGGTTATCCAGTACATTGTTACTGCCTCCAAAACAggCAGTGTGTGTAGCAGTCATCAGATTTCCCCTCAGGAGTTCCTGGGGGAGTTAAAGTCAGGGGTGACTGACGAACGCCTCATGGCCTGTCTGGACTCTCTCCGTGTCTCCCTCACCAGCAACCCTGTCAGCTGGGTGCAGAGCTTTGGCCACGAGGGTCTGGGACTGCTGCTAGACATTCTGGAGAAGCTGCTTCACAAGAAacaCCAGGATAAACCTGACAAGAag

Function

NR:

description
PREDICTED: protein diaphanous homolog 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951469.1 False 3835 mRNA 0.52 29 1803391 2339987
TU1727632 True 663 TUCP 0.51 6 2126156 2339556

Neighbor

gene id symbol gene type direction distance location
LOC118941075 LOC106592870 coding downstream 14075 1778315 ~ 1789326 (-)
LOC110495376 pcdh17 coding downstream 637644 1004783 ~ 1165747 (-)
LOC118941074 NA coding downstream 738969 1061296 ~ 1064422 (-)
LOC110515392 LOC106574916 coding downstream 1224833 572125 ~ 578558 (-)
LOC118941236 NA coding downstream 1229903 572791 ~ 573488 (-)
LOC110495377 LOC106595604 coding upstream 186739 2526726 ~ 2539644 (-)
LOC110512986 pcdh9 coding upstream 1405745 3745732 ~ 4296638 (-)
LOC118941076 NA coding upstream 1747688 4087675 ~ 4088497 (-)
LOC110528793 LOC106594540 coding upstream 2229069 4569056 ~ 4580594 (-)
LOC110516275 LOC106574953 coding upstream 2243818 4583805 ~ 4784556 (-)
G1509966 NA non-coding downstream 1711 1801163 ~ 1801680 (-)
G1509964 NA non-coding downstream 3698 1799410 ~ 1799693 (-)
G1509960 NA non-coding downstream 8066 1794966 ~ 1795325 (-)
G1509956 NA non-coding downstream 15812 1787092 ~ 1787579 (-)
G1510354 NA non-coding upstream 40865 2380852 ~ 2390287 (-)
G1510210 NA non-coding upstream 50419 2390406 ~ 2392808 (-)
G1510359 NA non-coding upstream 54578 2394565 ~ 2395131 (-)
G1510368 LOC106574988 non-coding upstream 91411 2431398 ~ 2432084 (-)
G1510376 NA non-coding upstream 102011 2441998 ~ 2446607 (-)
G1509514 NA other downstream 661002 1141548 ~ 1142389 (-)
G1509259 LOC106593605 other downstream 1010725 791399 ~ 792666 (-)
LOC110516736 ercc3 other downstream 1263085 487243 ~ 540331 (-)
LOC110527176 LOC106575904 other downstream 1364381 430551 ~ 439047 (-)
G1510645 NA other upstream 538666 2878653 ~ 2879377 (-)
G1510865 NA other upstream 865388 3205375 ~ 3205923 (-)
G1512635 NA other upstream 2495083 4835070 ~ 4841794 (-)
G1512560 LOC106574716 other upstream 2969574 5281447 ~ 5321420 (-)
LOC118941221 NA other upstream 3069004 5408991 ~ 5718855 (-)
G1510274 NA non-coding downstream 28312 2095519 ~ 2097844 (-)
G1510266 NA non-coding downstream 68663 2056039 ~ 2057493 (-)
G1510264 NA non-coding downstream 71943 2053524 ~ 2054213 (-)
G1510263 NA non-coding downstream 73264 2052434 ~ 2052892 (-)
G1510262 NA non-coding downstream 82241 2043587 ~ 2043915 (-)

Expression


Co-expression Network