LOC110516275 (LOC106574953)


Basic Information

Item Value
gene id LOC110516275
gene name LOC106574953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4583805 ~ 4784556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951223.1
TTGATATCGTTgttccccttccccttttccgcagaggaaatgtattttcttctacAGTTTACTAAccttacagtaggtggcggcagaGAGGTTATATTTGTGTAAATGTCAGTATACCAGAGAAGAAGATGACGGTGTTGCATTGTCGAGGTGGGGAACAGGAAGTTCCGGGTCGAAACGACAGAGCTGTGCTGTTGTGTCGATAGTGGTTGTGTCCGTTTCAAATGTATCATTGTAGaccgactcagattaagtctgaggccgttaacatcaacagtgaggacaaacccagccTGCCACTCTCCTTCCACAAGGagtccaaacctacagtcactgtgtcctgattgtgacagtggagcctagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGACCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaccAATCCTGTcactctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatgacatcagtgaagctggaagactgcagtcaaacactgaaGCTGAATGTCatcattaaagatgaagaagaggaggaggagattggTACATCTGTTAGTCATGACCGACTCAGATTAAGTCTGAGGCCGTTAACGtcaacagtgaggacaaacccagcctgtctctctccttccacactgagtagaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgtactgcaggatccagagatggcatcagtgaagatggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaagaggaggagaagattagGACAACTGTTAGTCATGgagaccgTGTTGAGACATTCCCTACATCCAGAGAGACACAGCAGGAAGATCACAGACCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGAATTTTCCAATTCTATCAAAGCTAAAAGTACACTtaaaaatacacacaggagacaATCTGTATTCCTGTACTGACTGTAGGAAGAGATTCACAACATCAAGGGCTCTGACACTTCATCAGAGagtgcacacaggagagaagccttactcctgctcgtactgtggaaaatgcttcacaacatcgtCTGAGTTaacagttcatcagagaacacacactggagaaaagccttatatctgctctgactgtgggaagagtttttctCACCTGTGTAACTTTAAAGCACACCAACGTATACATGCAGGAGAGAAGCCgttctcctgctctgactgtaggAAGAGTTTCTCCCACCTGTGTAACTTTAAAGCACACCAACGTATACATGCAGGAGAGAAGCCGTACTTCTGCTCTGACTGTAGGAAGAGTTTCTCCCACCTGTGTAACTTTAAAGCACACCAACGTATACATGCAGGAGAGAAGCCGTTCTCCTGCTctgagtgtgggaagagtttctctcaacagAACCATTTAAAATCACAccaacgtatacacacaggagagaagccttactactgctctgactgtgggaagagtttctctcgATTGGATACTTTAAaatcacatgaacgtatacatacaggaaaGAAGCGTTACTACTGCTCCGACTGTAGGAAGAGTTTCTCCCACCAGGGTAGCTTAAAAAAACACCAatgtatacacacaggagagaagccttactcctgctgtgactgtggaaaatgcttcacaacatcattTGATCTAAAAGTTCATctgagaacacacactggagaaaagccttacatatgctctgactgtgggaagagtttctctcaacagAGCAACTTAAAAACACACAAACGTATGCAtaaaggagagaagccttactactgctctgtgtgtgggaagagtttctctcaacagagcaacttaaaaacacatgaacgtATGCATAAAGGAGAGAAGCCATACTACTGCTCtgtctgtgggaagagtttctctcaacagagcaacttaaaaacacaccaacgtatacaTAAAGGAGAGAAGACTCATCAGTTCTCTCAGACCAGCTAAGATTAAAATCACTCCCATCACTCAATTTTCATCTCattgcttgacttggactgaaataggtgctgGTACTGTTTTGTATTTAGCTTCCACAACATACATCATTCATAAGTAAATTGTCTGTTTATAAAATATAAATTGGTATGTGTTATTCACTGACATGTGGACTTAAACTTCATTGTGTTCTGTGACATTTTAATCACTGCGTTGTAGAGATGATCTCTTTATCTATGTATGTTGCTATTGTGAGGTTAACACACGTCTAGCAGATTTAATCAGTCTGTCATAGGTTGTTATTCTATTCGTATTATACGGTAATTCATCAGTTCTGCCCCACAAAGGAAAATGCCAATAAACTCCCGTGATGCACTT
>XM_036951224.1
TTATGTATTTGGTTTTGATATCGTTgttccccttccccttttccgcagaggaaatgtattttcttctacAGTTTACTAAccttacagtaggtggcggcagaGAGGTTATATTTGTGTAAATGTCAGTATACCAGAGAAGAAGATGACGGTGTTGCATTGTCGAGGTGGGGAACAGGAAGTTCCGGGTCGAAACGACAGAGCTGTGCTGTTGTGTCGATAGTGGTTGTGTCCGTTTCAAATGTATCATTGTAGaccgactcagattaagtctgaggccgttaacatcaacagtgaggacaaacccagccTGCCACTCTCCTTCCACAAGGagtccaaacctacagtcactgtgtcctgattgtgacagtggagcctagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGACCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaccAATCCTGTcactctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatgacatcagtgaagctggaagactgcagtcaaacactgaaGCTGAATGTCatcattaaagatgaagaagaggaggaggagattggTACATCTGTTAGTCATGGACGACTTGAATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacacggagtccaaacctacagtcactgggtcctgattgtgacagtgaAGCCCAGTTTGctctgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacaatGGAACTGAATGTaaacattaaagatgaagaagaagaggagaagattGGAACATCTGTTTCTCATGgagaccaCGTTGAGACATTCCCTGCATCCAGACAACAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGTGGAGATTTTCCCATTTCTATCAAAGCTAAAAGCACACctaaaaatacacacaggagagaagccttactcctgctctgactgtggggtgAGTTTCTCTCGACTGGATAccttaaaaacacaccaacgtatacatacaggagagaagccttactactgctctgactgtggggagAGATTCTCTCAAATGAGCAGCTTAAAAGCACACAAACAAGTAcatactggagagaagccttactcctgctctgattgTGGGAAGTGTTTCTCCCGATCGGATACCTTGAaatcacatgaacgtatacatacaggagagaagccttacttctgctctgactgtggaaaaagtTTCTCCCGATTGGATAActtaaaaacacatgaacgtgtacatacaggagagaagccatatTCCTGCTCAGACTGTGTAAAATGCTTCAAAACATCAACTGAGCTAAAAgtacatcagagaacacacacaggagagaggcgttactactgctctgactgtgcaaaatgttttaaaacatcaactgagctaaaacttcatcagagaacacatacaggagagaagccttacttctgctctgactgtggaaagagtttctcccGATTGGATACcttaaaaacacatgaacgtatacatacaggagaaaacccttactcctgctctgactgtgtaaAATGCTTCAAAACATCAACTGAGCTCAAAGTTcatcagaaaacacacacaggagagaagccttattacTGCTCAGTctgtggaaaatgttttaaaacatcaaatgagctaaaagttcaccagagaacacacacaggagagaagccttacgtcTGCTCTGGCTGTGGCAAAAGTTTCTCTCACCAGAGCAacttaaaaacacaccaacgtatacaTTAAACCCAGTTAAAGCGAGGCGTCCCTCTCGCAAAGGGTCAAAGCTCGCGGGATTTGCACAattaaacgctctactgaatgaggacatctagtggaagacatagaaagtgtctccagatccatagctggttgggaagggtgggggcgatgacgtcaaagttgccccaagtTTCAGGCTCCCAAAA
>XM_036951225.1
TATTTATCTATTTATGTATTTGGTTTTGATATCGTTgttccccttccccttttccgcagaggaaatgtattttcttctacAGTTTACTAAccttacagtaggtggcggcagaGAGGTTATATTTGTGTAAATGTCAGTATACCAGAGAAGAAGATGACGGTGTTGCATTGTCGAGGTGGGGAACAGGAAGTTCCGGGTCGAAACGACAGAGCTGTGCTGTTGTGTCGATAGTGGTTGTGTCCGTTTCAAATGTATCATTGTAGaccgactcagattaagtctgaggccgttaacatcaacagtgaggacaaacccagccTGCCACTCTCCTTCCACAAGGagtccaaacctacagtcactgtgtcctgattgtgacagtggagcctagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGACCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaccAATCCTGTcactctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatgacatcagtgaagctggaagactgcagtcaaacactgaaGCTGAATGTCatcattaaagatgaagaagaggaggaggagattggTACATCTGTTAGTCATGGGCAGGGGCTCAGCCATGGCTGGGACTTGGGAGGGCATCggcccacttgggagccaggcccagccaatcagcatgagtttttccccacaaaacgtcttgattacagacagaaatactgctCACCCCCCTcccagacaatcctgcaggtgaagatgtcctgggctgccgtggttacatgtgatctgcagttgtgaggccggatggatgtactgacaaattctctaaaaggacGTTAGAGGTGACTTATGGTAGAGATATAAATATTGAAATCTCTCCTGCAGTCATCATGACAATTGCACATTCCCCGAACTTGAGATatctgacattgtgttgtgtggccttttattgtcccccagcataaggtgcagttgtgtaatgataatgctgttatcagcatcttgatatgccacacctgtcaggtggatggattatcttgacaaaggctgaaatgctcacttacagggaTAGTAACAaagttgtgcacaacatttgagagaaattagctttttctGCACATGGAACATTGCtggaatgttttatttcagctcatgaaaccaacactttacatgtttagtgtatattttagttcagttttTATATTGGTAGTCCAATTTAATGTAACCtaacatactaaatggagtggcaCGGATGTTTTTGTAATACATAATATgttttgctctgagaccaggttgtcccTCTGCAGTATTTtgcaaataattaaaaaaaatgtgttgaacctttatttaactaggcaagtcagttaagaataaattcttatttacaatgatggcttaggaacagccttgttcagaggcagaacaacagatttttaccttgtcagctcggggattcgatctagtaaccttttggttactggcccaatgctctaaccactaggctaccttccgcccctaacatgtatcagatagagatgatCACTTTTCACCATTAGTTTGGGGGGATTATTTTACAACTTTTTTTAATGATACACAGTTTATGAAATGAATACGTGTGTTTATTAATTGTCTTTAAAACTAGATGAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592258, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951223.1 False 2541 mRNA 0.43 5 4583805 4784531
XM_036951224.1 False 2161 mRNA 0.45 5 4751481 4784545
XM_036951225.1 True 1892 mRNA 0.42 4 4767691 4784556

Neighbor

gene id symbol gene type direction distance location
LOC110528793 LOC106594540 coding downstream 3211 4569056 ~ 4580594 (-)
LOC110512986 pcdh9 coding downstream 287167 3745732 ~ 4296638 (-)
LOC118941076 NA coding downstream 495308 4087675 ~ 4088497 (-)
LOC110495377 LOC106595604 coding downstream 2044161 2526726 ~ 2539644 (-)
LOC110517047 LOC106574932 coding downstream 2243818 1803391 ~ 2339987 (-)
LOC118941021 NA coding upstream 7401 4791957 ~ 4803647 (-)
LOC110528894 NA coding upstream 27507 4812063 ~ 5492191 (-)
LOC110516780 NA coding upstream 47154 4810980 ~ 4833702 (-)
LOC110528776 NA coding upstream 49786 4834342 ~ 4855537 (-)
LOC110528886 LOC106592258 coding upstream 171894 4956450 ~ 5097338 (-)
G1511850 NA non-coding downstream 77110 4505710 ~ 4506695 (-)
G1511838 NA non-coding downstream 92125 4490593 ~ 4491680 (-)
G1511819 NA non-coding downstream 119760 4433911 ~ 4464045 (-)
G1511825 NA non-coding downstream 121858 4461074 ~ 4461947 (-)
G1511818 NA non-coding downstream 150935 4432583 ~ 4432870 (-)
G1512768 NA non-coding upstream 3158 4787714 ~ 4863606 (-)
G1512781 NA non-coding upstream 63636 4848192 ~ 4921456 (-)
G1510865 NA other downstream 1377882 3205375 ~ 3205923 (-)
G1510645 NA other downstream 1704428 2878653 ~ 2879377 (-)
LOC110495376 pcdh17 other downstream 3418383 1004783 ~ 1165747 (-)
G1509514 NA other downstream 3441416 1141548 ~ 1142389 (-)
G1512635 NA other upstream 50514 4835070 ~ 4841794 (-)
G1512560 LOC106574716 other upstream 525005 5281447 ~ 5321420 (-)
LOC118941221 NA other upstream 624435 5408991 ~ 5718855 (-)
LOC110515909 LOC106592258 other upstream 1013232 5493050 ~ 5870220 (-)
LOC110495369 lims1 other upstream 1124843 5898100 ~ 5913381 (-)

Expression


Co-expression Network