LOC118941040 (LOC106593609)


Basic Information

Item Value
gene id LOC118941040
gene name LOC106593609
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4618088 ~ 4624857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951379.1
ATGGGAAAGAACCTGATCTTCAACCAGGACCTGCACGTCCGTAAGGCGCTGGACAACGAGAGGGTCAGCGGCCAACTGGGGTTCATGAACGAGgTGAGGAAGGAAGATGTGGCTGTTGTCCAGGTTCATCCTGTTCATGGAGTGTTTGAGCAGAGGAGGATCCAAGATGTTGGTGTCCTGGATGCTATCAGTATACTGCTCTCTGATGAGGAGTCCCCCTTTATCTCTCTGCTGGCAGTCAACCCTGAGGTCCTGGTTCAACAGGTGAACTATGCAGACGGGTGCTTCAGTAAAGAAGACAGAGCCTATGCCTTCTTGAACCGCATCGTGACCCTGGCCTTCACCATACCGCCGCTCTGCCACACCTCCAAGCACAAGGTGTTCTACAATATCATTAGCGGCCAATCAGAGATCACGGAAGAAGCCAACGGTCATGGGTCAAAGGGGATCgagctgagagagctggacctgggCAGCCCGAAGTCATCCCTCTCCTGGATCGAGAGCACCCCCCAAACAAAGGAGACGTCAATTATTCTGACGGAGACCAGTACTCCTTTGATAGACAACGACCACATCAAGGAGGCGCACGTGGCGTTTGCGCTGAGTGAGGACGAGGTGGACAAGGCGATAGAATCAGCGCTGGAGAGCATCCTGTCCAGTAACAGAGGGAACCTCCACCACTACATCTCTGATGACACCATGTCCATGAGACGGGTCATCAACTCCATCAGGGTCACCGTGGTGCTCATGGAGGCTCTGAAGACTGAGCTGCCTCCGCCAGAGAACATCGCTGCCTGGGTCGTTCTTGCCAACCATTGGCCATGTCGTCTCAGCTGGATCCTACAGTGTCTGGAGGACGAGCAGCAGAGAGCAGAGATTGATGACGCTGTCGGGACGGCGACAGTCGTCGACGAGTCCAAGGCTTTGTGGGagGTGTTCAGCGACTCGAGGATGGAGCTTCACATGATGAGGGAGGAGATCGAAGACCTGCTGGAGCAGGACGGAGATCCAGAGATGTTTGAGATGTTCCTCAAGGTGCATTTCCAGTTCAGGGTGAGGGACGCGGAGAGGTTCAAGCTGACCACGGTTAACCTGGATCATTCTATCAGGAGGGAGCTGGCACGGATCAGAGGGACCACCGGACTGAAGAATTCTGGGTGGGGGAGGAACCTGGCTCCTCTCAACATCAGGACTGTTATCAACATGACCTCTGAGGACGTCTGCAAAGCGCTGGCGAGGATGAACCTCCCTAAGAAGTACGCAGACATTGTCCGTAGCAATGACCTCACCGGCCAGGCGCTGGTCTTCGGTGATCCCGACGACCTCAAACAGCTGCTCCAGATGACCTTCGGGGAGTGGACGACCTTCAGACTCCACTTCCTGGGTATCGGTGGGAGGGCCCAAAGTGGAGCCAAGGCCAAGGCCACGTCCCTAAACCCCAAACAACTGACCAATCAGCAGTCCAAACAACCTCATTTCGGTCCCCACAGCCACGGGTCAACATTAAATCTGTCTTTTTCTTAATGCCGTGGCGAGATAGAGATGCGTGATAAACGGAATGgtctgtgtattgatgtgtagtgCCCATGAGAACCTACCTATCTATTGTGTAATGACAGTGAACTGCATTCCTCTGCCAGCTCCTGTAGAGCTTTCAGTTGCTCAACCCAGGGTAAAGTTCAAAGGAATGGTAACTGGTTAATAGTTACTTAGATTACATTTTCtattacatttagttacatttaactGGTTAATAGTTACTTAGATTACAttttagattacatttttttccaCCACTAGGTGGCGCTGCCATTGGATACATGTCAAAGGGACTTACTGTCAAccaacaaaataaaataacacacagaacaattT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951379.1 True 1878 mRNA 0.52 9 4618088 4624857

Neighbor

gene id symbol gene type direction distance location
LOC118941057 NA coding upstream 1317860 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 1403634 3214038 ~ 3214454 (+)
tdrd3 LOC106592742 coding upstream 2164318 2377933 ~ 2453770 (+)
LOC118941055 NA coding upstream 2885998 1731224 ~ 1732090 (+)
LOC118941054 NA coding upstream 3758289 854370 ~ 859799 (+)
LOC110516278 LOC106600620 coding downstream 29184 4654041 ~ 4748243 (+)
LOC110528775 LOC106575958 coding downstream 255811 4880668 ~ 4933600 (+)
LOC110495595 LOC106574881 coding downstream 271057 4895914 ~ 5043592 (+)
LOC118941222 NA coding downstream 359103 4944941 ~ 5000801 (+)
LOC110510710 LOC106575389 coding downstream 528072 5152929 ~ 5739611 (+)
G1512024 NA non-coding upstream 1866 4615588 ~ 4616222 (+)
G1512023 NA non-coding upstream 3024 4614524 ~ 4615064 (+)
G1512004 NA non-coding upstream 16245 4574531 ~ 4601843 (+)
G1511871 NA non-coding upstream 53591 4561573 ~ 4564497 (+)
G1511855 NA non-coding upstream 101701 4514410 ~ 4516387 (+)
G1512027 NA non-coding downstream 3878 4628735 ~ 4629158 (+)
G1511974 LOC106592258 non-coding downstream 149287 4774144 ~ 4822072 (+)
G1512080 NA non-coding downstream 150719 4775576 ~ 4821454 (+)
G1511972 NA non-coding downstream 188555 4813412 ~ 4815949 (+)
G1512020 NA other upstream 136 4610018 ~ 4617952 (+)
G1511398 NA other upstream 333144 4281416 ~ 4284944 (+)
G1510639 NA other upstream 1743922 2872394 ~ 2874290 (+)
G1510527 NA other upstream 1908341 2708713 ~ 2709747 (+)
G1510524 LOC106597055 other upstream 1912591 2704842 ~ 2705497 (+)
G1512113 NA other downstream 241138 4865995 ~ 4868008 (+)
G1512182 NA other downstream 479230 5104087 ~ 5106088 (+)
G1512205 NA other downstream 617877 5242734 ~ 5243427 (+)
G1512309 NA other downstream 983051 5607908 ~ 5613036 (+)

Expression


Co-expression Network