LOC118941021


Basic Information

Item Value
gene id LOC118941021
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4791957 ~ 4803647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951256.1
AAGTTATCCTTCACCATTTGTAGAGAGAGGCCAACTGCATGGAATGGCGTCGATTAATGCGAATGAATGggagcacgtgtcaaactcattccatggaggaccAAGTGTCTGCGTGTTTTCGCTCCACACCTGTACTTGAttaatgaattaagACCGACTCAGATTAAGTCTGAGGCTGttaacatcaacagtgaggacaaacccagcctgccactctccttccacactgagtagaaacctacagttactgggtcctgattgtgacagtggagcccagtttgtattgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtaaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGGTACCATGTTGAGACATTCTCCACATCCAGAGAGCAACAGCAGGGAGATCAGAGAGCTAAGAAGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTATCAAAGCTAAGAATACACctaaaaatacacacaggagagaagccttactcctgctctgactgtggaaaatgttttaaaacatcaaaTGAGCTAAAGGTTCatcagacaacacacacaggagagaagcctttcttctGCCCTGACTGTGGAACTAGTTTCTCTCAGCTTTCCCACTTAAaatcacatgaacgtatacatacaggggagaagccatactcctgctctgactgtgggaaatgttttaaaacattatatgagctaaaagttcatcagagaacacacacaggagagaagccttacgtctgctctgactgtggaaaatgcttcacatCATCAACTcatctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaacgTTTTAAAACATCAAATGAGCTAAAGGTTCATCAGaagactcacacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCATCTGGGCACCTTAAAAACACACCAACTTATACACACTGGCGAGAAGCCTTACTTCTGCtttgactgtggaaaatgcttcaaaacatcaactgagctaaaagttcatcagagaacacacacaggagagaagccgtatTACTGCTCTGAGTGTGGAACTAGTTTCTCTAAATTTTCCATcttaaaaacacatgaacgtatacatacaggagagaagccttacgtctgctctgactgtggaaaatacTTCACAACATCAACTCATCTAAAAGTTCAtcggagaacacacacaggggagaagccatactcctgctctgactgtggaaaacgttttaaaacatcaaatgagctaaaagttcaccagagaacacatacaggagagaagccttatgtCTGCTCTAGCTGTGGAACTAGTTTCTCTCAACTTTCCCATTTACaatcacatgaacgtatacatacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCAGCTGGGCAccttaaaaacacaccaacgtatacacacaggagcgaagccttattcctgctctgactgtagaaaatgttttaaaacatcaaatgagctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaatgttttaaaacatcaaatgagctaaaagttcaccagagaacacacacaggagagaagccttacgtcTGCTTTGACTGTGGAACTAGTTTCTCGCAACTTTCCAGCTTAAaatcacatgaacgtatacatacaggggagaagccatactcCTGCTCTGTTTGTGTAAAATGCTTCAAAACAGCAACCGAGCTAatagttcatcagagaacacacgcATGAGTGTCTGCTCTGACTTTTGGGTGAGTTTCTCTCACCATAGCAACTTAACACACCAATGTagtcacacaggagagaagtctTACTCCTGCTCTGTGGAAGGGTGGGCGTGTAACTCAAACTTCTAGCCAAAGGCTGCTGTGTTTAGAATCTCAtcaaggaggactgtagcattttagctaatcagcaactttgcaactacttactactttttagctattaCTTAGTATGTTAGCATATCATACATATTACaagttcgtaacatattgtatgaatagCAATGCGTAAAATAACGTaagaattgtaattcgtaacatacgATACTTCCTAGAAGTTGTATTATACTGAACAATTTaaacacaacaatttcaaagatttatagtttgtataaggaaatcagtcattttaaataagaggccataatctatggatttcacatgactgggcaggggctccGCCATGGGTGGGacttgggagggcataggcccacttgggagccaggcccattcAATCGgcatgagtttttccccacaaaaggtctTGATTACAGATAGAAATACTACTCAGCCCCCTCcaagacaatcctgcaggtgaagaggtcctgggctgccgtagttacatgtgatctgcagttgtgaggccggttggatgtactgccaaattctctaaaaagacgttagaggtggcttatggtagagatataCATATTGAATTCtctcctgcagtcatcatgcaaTTGCACATTCCCTGAACTTGAGATatatgtgacattgtgttgtgtggccttttattgtcccccagcacaaggtgcacttgtgtaatgataatgctgttttatCAGCATCTTGATAtttcacacctgtcaggtggatggattatcttgacaaaggctgaaatgctcacgaacagggaTAGTAACAaagttgtgcacaacatttgagagaaattagctttttctGCACATGGAACATTGCtggaatgttttatttcagctcatgaaaccaacactttacatgtttagtttatattttagttcagttttTATTGGTATTGTAATGTAACCtaacatactaaatggagtggcaCGGATGTTTTTGTAATACATAATACgttttgctctgagaccaggttgtcccTCTGCAGTATTTTGTGGGATTGAGCTAGTAGacacttctttaaaaaaaaaaaatgttaacctttatttaactctgcAAGtctgttaaaaacaaattcttatttacaatgatggcctaagaacagtgggttaactgccttgttcagaggcagaacaacagagttttaccttgtcagctcggggaccttttggttactggcccaacgctccaaccacaaGTCTACCTTCCGCCCctaacatgtatcagatagagatggtgtgatgatcactTTTCACCACTAGTTTGGGGGGATtattttacaactttatttaatgATACACAGTTTATGAAATGAATCCATGTGTTTATTAATGGTCTTTTAAACTAGATTAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAACTGCATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATATGTACTGGTCAACCTCTT
>XM_036951257.1
CAGTATACCAGAGAAGAAGATGACGCTGATGCACTGTCGTAGTGGGGAACAGGAAGTTCCGGGTCGAATCGACAGCGCTGTGCTGTTGTGTCGATAGTGGTTGTGTCCGTTTCAAATTTTTCATTGTAGACCGACTCAGATTAAGTCTGAGGCTGttaacatcaacagtgaggacaaacccagcctgccactctccttccacactgagtagaaacctacagttactgggtcctgattgtgacagtggagcccagtttgtattgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtaaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGGTACCATGTTGAGACATTCTCCACATCCAGAGAGCAACAGCAGGGAGATCAGAGAGCTAAGAAGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTATCAAAGCTAAGAATACACctaaaaatacacacaggagagaagccttactcctgctctgactgtggaaaatgttttaaaacatcaaaTGAGCTAAAGGTTCatcagacaacacacacaggagagaagcctttcttctGCCCTGACTGTGGAACTAGTTTCTCTCAGCTTTCCCACTTAAaatcacatgaacgtatacatacaggggagaagccatactcctgctctgactgtgggaaatgttttaaaacattatatgagctaaaagttcatcagagaacacacacaggagagaagccttacgtctgctctgactgtggaaaatgcttcacatCATCAACTcatctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaacgTTTTAAAACATCAAATGAGCTAAAGGTTCATCAGaagactcacacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCATCTGGGCACCTTAAAAACACACCAACTTATACACACTGGCGAGAAGCCTTACTTCTGCtttgactgtggaaaatgcttcaaaacatcaactgagctaaaagttcatcagagaacacacacaggagagaagccgtatTACTGCTCTGAGTGTGGAACTAGTTTCTCTAAATTTTCCATcttaaaaacacatgaacgtatacatacaggagagaagccttacgtctgctctgactgtggaaaatacTTCACAACATCAACTCATCTAAAAGTTCAtcggagaacacacacaggggagaagccatactcctgctctgactgtggaaaacgttttaaaacatcaaatgagctaaaagttcaccagagaacacatacaggagagaagccttatgtCTGCTCTAGCTGTGGAACTAGTTTCTCTCAACTTTCCCATTTACaatcacatgaacgtatacatacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCAGCTGGGCAccttaaaaacacaccaacgtatacacacaggagcgaagccttattcctgctctgactgtagaaaatgttttaaaacatcaaatgagctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaatgttttaaaacatcaaatgagctaaaagttcaccagagaacacacacaggagagaagccttacgtcTGCTTTGACTGTGGAACTAGTTTCTCGCAACTTTCCAGCTTAAaatcacatgaacgtatacatacaggggagaagccatactcCTGCTCTGTTTGTGTAAAATGCTTCAAAACAGCAACCGAGCTAatagttcatcagagaacacacgcATGAGTGTCTGCTCTGACTTTTGGGTGAGTTTCTCTCACCATAGCAACTTAACACACCAATGTagtcacacaggagagaagtctTACTCCTGCTCTGTGGAAGGGTGGGCGTGTAACTCAAACTTCTAGCCAAAGGCTGCTGTGTTTAGAATCTCAtcaaggaggactgtagcattttagctaatcagcaactttgcaactacttactactttttagctattaCTTAGTATGTTAGCATATCATACATATTACaagttcgtaacatattgtatgaatagCAATGCGTAAAATAACGTaagaattgtaattcgtaacatacgATACTTCCTAGAAGTTGTATTATACTGAACAATTTaaacacaacaatttcaaagatttatagtttgtataaggaaatcagtcattttaaataagaggccataatctatggatttcacatgactgggcaggggctccGCCATGGGTGGGacttgggagggcataggcccacttgggagccaggcccattcAATCGgcatgagtttttccccacaaaaggtctTGATTACAGATAGAAATACTACTCAGCCCCCTCcaagacaatcctgcaggtgaagaggtcctgggctgccgtagttacatgtgatctgcagttgtgaggccggttggatgtactgccaaattctctaaaaagacgttagaggtggcttatggtagagatataCATATTGAATTCtctcctgcagtcatcatgcaaTTGCACATTCCCTGAACTTGAGATatatgtgacattgtgttgtgtggccttttattgtcccccagcacaaggtgcacttgtgtaatgataatgctgttttatCAGCATCTTGATAtttcacacctgtcaggtggatggattatcttgacaaaggctgaaatgctcacgaacagggaTAGTAACAaagttgtgcacaacatttgagagaaattagctttttctGCACATGGAACATTGCtggaatgttttatttcagctcatgaaaccaacactttacatgtttagtttatattttagttcagttttTATTGGTATTGTAATGTAACCtaacatactaaatggagtggcaCGGATGTTTTTGTAATACATAATACgttttgctctgagaccaggttgtcccTCTGCAGTATTTTGTGGGATTGAGCTAGTAGacacttctttaaaaaaaaaaaatgttaacctttatttaactctgcAAGtctgttaaaaacaaattcttatttacaatgatggcctaagaacagtgggttaactgccttgttcagaggcagaacaacagagttttaccttgtcagctcggggaccttttggttactggcccaacgctccaaccacaaGTCTACCTTCCGCCCctaacatgtatcagatagagatggtgtgatgatcactTTTCACCACTAGTTTGGGGGGATtattttacaactttatttaatgATACACAGTTTATGAAATGAATCCATGTGTTTATTAATGGTCTTTTAAACTAGATTAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAACTGCATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATATGTACTGGTCAACCTCTT
>TU1730720
agtgaagctggaagactgcagtcaaacactggagctgaatgtaaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGGTACCATGTTGAGACATTCTCCACATCCAGAGAGCAACAGCAGGGAGATCAGAGAGCTAAGAAGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTATCAAAGCTAAGAATACACctaaaaatacacacaggagagaagccttactcctgctctgactgtggaaaatgttttaaaacatcaaaTGAGCTAAAGGTTCatcagacaacacacacaggagagaagcctttcttctGCCCTGACTGTGGAACTAGTTTCTCTCAGCTTTCCCACTTAAaatcacatgaacgtatacatacaggggagaagccatactcctgctctgactgtgggaaatgttttaaaacattatatgagctaaaagttcatcagagaacacacacaggagagaagccttacgtctgctctgactgtggaaaatgcttcacatCATCAACTcatctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaacgTTTTAAAACATCAAATGAGCTAAAGGTTCATCAGaagactcacacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCATCTGGGCACCTTAAAAACACACCAACTTATACACACTGGCGAGAAGCCTTACTTCTGCtttgactgtggaaaatgcttcaaaacatcaactgagctaaaagttcatcagagaacacacacaggagagaagccgtatTACTGCTCTGAGTGTGGAACTAGTTTCTCTAAATTTTCCATcttaaaaacacatgaacgtatacatacaggagagaagccttacgtctgctctgactgtggaaaatacTTCACAACATCAACTCATCTAAAAGTTCAtcggagaacacacacaggggagaagccatactcctgctctgactgtggaaaacgttttaaaacatcaaatgagctaaaagttcaccagagaacacatacaggagagaagccttatgtCTGCTCTAGCTGTGGAACTAGTTTCTCTCAACTTTCCCATTTACaatcacatgaacgtatacatacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCAGCTGGGCAccttaaaaacacaccaacgtatacacacaggagcgaagccttattcctgctctgactgtagaaaatgttttaaaacatcaaatgagctaaaagttcatcagagaacacacacaggagagaagccttattcctgctctgactgtggaaaatgttttaaaacatcaaatgagctaaaagttcaccagagaacacacacaggagagaagccttacgtcTGCTTTGACTGTGGAACTAGTTTCTCGCAACTTTCCAGCTTAAaatcacatgaacgtatacatacaggggagaagccatactcCTGCTCTGTTTGTGTAAAATGCTTCAAAACAGCAACCGAGCTAatagttcatcagagaacacacgcATGAGTGTCTGCTCTGACTTTTGGGTGAGTTTCTCTCACCATAGCAACTTAACACACCAATGTagtcacacaggagagaagtctTACTCCTGCTCTGTGGAAGGGTGGGCGTGTAACTCAAACTTCTAGCCAAAGGCTGCTGTGTTTAGAATCTCAtcaaggaggactgtagcattttagctaatcagcaactttgcaactacttactactttttagctattaCTTAGTATGTTAGCATATCATACATATTACaagttcgtaacatattgtatgaatagCAATGCGTAAAATAACGTaagaattgtaattcgtaacatacgATACTTCCTAGAAGTTGTATTATACTGAACAATTTaaacacaacaatttcaaagatttatagtttgtataaggaaatcagtcattttaaataagaggccataatctatggatttcacatgactgggcaggggctccGCCATGGGTGGGacttgggagggcataggcccacttgggagccaggcccattcAATCGgcatgagtttttccccacaaaaggtctTGATTACAGATAGAAATACTACTCAGCCCCCTCcaagacaatcctgcaggtgaagaggtcctgggctgccgtagttacatgtgatctgcagttgtgaggccggttggatgtactgccaaattctctaaaaagacgttagaggtggcttatggtagagatataCATATTGAATTCtctcctgcagtcatcatgcaaTTGCACATTCCCTGAACTTGAGATatatgtgacattgtgttgtgtggccttttattgtcccccagcacaaggtgcacttgtgtaatgataatgctgttttatCAGCATCTTGATAtttcacacctgtcaggtggatggattatcttgacaaaggctgaaatgctcacgaacagggaTAGTAACAaagttgtgcacaacatttgagagaaattagctttttctGCACATGGAACATTGCtggaatgttttatttcagctcatgaaaccaacactttacatgtttagtttatattttagttcagttttTATTGGTATTGTAATGTAACCtaacatactaaatggagtggcaCGGATGTTTTTGTAATACATAATACgttttgctctgagaccaggttgtcccTCTGCAGTATTTTGTGGGATTGAGCTAGTAGacacttctttaaaaaaaaaaaatgttaacctttatttaactctgcAAGtctgttaaaaacaaattcttatttacaatgatggcctaagaacagtgggttaactgccttgttcagaggcagaacaacagagttttaccttgtcagctcggggaccttttggttactggcccaacgctccaaccacaaGTCTACCTTCCGCCCctaacatgtatcagatagagatggtgtgatgatcactTTTCACCACTAGTTTGGGGGGATtattttacaactttattta

Function

NR:

description
zinc finger protein 624-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951256.1 False 3502 mRNA 0.41 3 4791957 4803060
XM_036951257.1 False 3479 mRNA 0.41 3 4791957 4803647
TU1730720 True 3026 lncRNA 0.41 2 4792127 4800253

Neighbor

gene id symbol gene type direction distance location
LOC110516275 LOC106574953 coding downstream 7401 4583805 ~ 4784556 (-)
LOC110528793 LOC106594540 coding downstream 211363 4569056 ~ 4580594 (-)
LOC110512986 pcdh9 coding downstream 495319 3745732 ~ 4296638 (-)
LOC118941076 NA coding downstream 703460 4087675 ~ 4088497 (-)
LOC110495377 LOC106595604 coding downstream 2252313 2526726 ~ 2539644 (-)
LOC110528894 NA coding upstream 8416 4812063 ~ 5492191 (-)
LOC110516780 NA coding upstream 28063 4810980 ~ 4833702 (-)
LOC110528776 NA coding upstream 30695 4834342 ~ 4855537 (-)
LOC110528886 LOC106592258 coding upstream 152803 4956450 ~ 5097338 (-)
LOC110514545 LOC106574716 coding upstream 286093 5068836 ~ 5188461 (-)
G1512764 NA non-coding downstream 9383 4777169 ~ 4782574 (-)
G1512758 NA non-coding downstream 35335 4755041 ~ 4756622 (-)
G1512655 NA non-coding downstream 50460 4663120 ~ 4741497 (-)
G1512750 NA non-coding downstream 56837 4734798 ~ 4735120 (-)
G1512565 NA non-coding downstream 161868 4628124 ~ 4630089 (-)
G1512781 NA non-coding upstream 44545 4848192 ~ 4921456 (-)
G1512807 NA non-coding upstream 135100 4938747 ~ 5502542 (-)
G1512808 NA non-coding upstream 140754 4944401 ~ 4944740 (-)
G1510865 NA other downstream 1586034 3205375 ~ 3205923 (-)
G1510645 NA other downstream 1912580 2878653 ~ 2879377 (-)
LOC110517047 LOC106574932 other downstream 2452401 1803391 ~ 2339987 (-)
LOC110495376 pcdh17 other downstream 3626535 1004783 ~ 1165747 (-)
G1509514 NA other downstream 3649568 1141548 ~ 1142389 (-)
G1512635 NA other upstream 31423 4835070 ~ 4841794 (-)
G1512560 LOC106574716 other upstream 505914 5281447 ~ 5321420 (-)
LOC118941221 NA other upstream 605344 5408991 ~ 5718855 (-)
LOC110515909 LOC106592258 other upstream 994141 5493050 ~ 5870220 (-)
LOC110495369 lims1 other upstream 1105752 5898100 ~ 5913381 (-)

Expression


Co-expression Network