LOC110516780


Basic Information

Item Value
gene id LOC110516780
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4810980 ~ 4833702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037315.1
agcatggtcattacacaggtgcaccttgtgctgggggacaataaaaggccacacaacacaatatcacagatgtctcaagtttaggGAATGTGCAATTctcatgatgactgcaggaatgtccaccagagctgttgccagagaactcaATATTTATATCTCTACCATTAGCCACCTCTAACgtccttttagagaatttggcagtacatccaaccggcctcacaactgcagatcacatgtaaccacggcagcccaggacctctTCACCTGCATGATTGTCCgaggtggtggggggaggggcTGAGTAGTATTTCTATCTGTAATCAagaccttttgtggggaaaaactaattctgattggccgggcctggctcccaagtgggcctatgccttcccaagtcccacccatggctgagcccctgcccagtcatgtgaaatccatactaaatggagtggcaCGGATGTTTTTGTAATATATAATACgttttgctctgagaccagATTAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAACTGCATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATA
>TU1730799
AAGTCACTCCATCACTTAATTCTCATCTCATAAAAGAAGTTGTAATTGGATCAAATGAAGAAAGCATAGAACACTGTAATCCTATTGGTTCTCACTGTGAGAGAACTGTGCAGAGGAAAGGGAGCGTTATAGAATGTTAGCCTCTCTTTACTCTACCAATCAGTGTGCACCTTGTCAGTTTTGGTGTGTTTTGTTGGCTTCTACTGTAAAGATTTGCACTTGGTGTTGAATACCCTCTGTTATTCttctcattttgaaaacaaacacTAGTCTGCCAATTGACTGGGTGGTACTGCTTCCCTCTCAGCCTGGCCTGACTCTGTCTGTTGGGAGAGTTTCAACTGGGCAGcttaaaaacacaccaacgtTTACACgtaggagagaagccttactcctgctctgtggAAGGGTGGGCGTGTAAACTCAAACGTCATGCCAAAGGTTgagtgtttgaatctcatcacggaggGCTTTAGCTTTTTAGCAACTtggcaactacttactactttttagctattacttagcatgttagctaccCTTTCTCCTAAACCCATTTAACTCTATCTTAAACCCCTCACCCCTAACCTAGCTAACGTCagcaacaacaaattggaattcgtaacatatcatacaatatgttacgaacttGTAATATGTATGAATAGCAATGCGTGAAATaacatatgaattgtaattcttAACATACGATACGTCCTTCAAGTCgtattatactgaacaacaatctaaacgtaacaatttcaaagatttacagtttgtataaggaaatcagtcaattgaaataaatgaggccctaatctatgttaGGTTACATTACATTGGACCTCCAATATAAACtaaacatgtgaagtgttggtttcatgagctgaaataaaaagatccagcacaaaaagctaatgtttctcaaatgttgtgcacaacttTGTTTATATatactgttagtgagcatttcagcctttgtcaagataatccatccacctgacaggtgtggcatatcaagatgctgataaaacagcatggtcattacacaggtgcaccttgtgctgggggacaataaaaggccacacaacacaatatcacagatgtctcaagtttaggGAATGTGCAATTctcatgatgactgcaggaatgtccaccagagctgttgccagagaactcaATATTTATATCTCTACCATTAGCCACCTCTAACgtccttttagagaatttggcagtacatccaaccggcctcacaactgcagatcacatgtaaccacggcagcccaggacctctTCACCTGCATGATTGTCCgaggtggtggggggaggggcTTAGTATTTCTATCTGTAATCAagaccttttgtggggaaaaactcattctgattggccgggcctggctcccaagtgggcctatgccttcccaagtcccacccatggctgagcccctgcccagtcatgtgaaatccatactaaatggagtggcaCGGATGTTTTTGTAATATATAATACgttttgctctgagaccaggttttCCCTCTGCAGTATTCTGTGTGAAGGAGCTAGTAGacactttttttattgaacctttatttaactaggcaagtcagttaagaacaaaatcttaattacaatgatggcctaggaacagtgggttaactgccttgttcagaggcagaataacagatttttaccttgtcagctcagggattcgatcttgcaaccttttggttactggcccaacgctctaaccactaggctaccttccgcccctaacatgtatcagatagagatgatCACTTTTCACCATTAGTTTGGGGGGATtattttacaactttatttaatgATACACAGTTTATGAAATGAATCCATGTGTTTATTAATTGTCTTTCAAACTAGATTAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAACTGCATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATA

Function

NR:

description
hypothetical protein EH28_03751

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037315.1 False 593 mRNA 0.45 2 4831710 4832671
TU1730799 True 1990 lncRNA 0.40 2 4810980 4833702

Neighbor

gene id symbol gene type direction distance location
LOC118941021 NA coding downstream 28063 4791957 ~ 4803647 (-)
LOC110516275 LOC106574953 coding downstream 47154 4583805 ~ 4784556 (-)
LOC110528793 LOC106594540 coding downstream 251116 4569056 ~ 4580594 (-)
LOC110512986 pcdh9 coding downstream 535072 3745732 ~ 4296638 (-)
LOC110528776 NA coding upstream 1671 4834342 ~ 4855537 (-)
LOC110528886 LOC106592258 coding upstream 123779 4956450 ~ 5097338 (-)
LOC110514545 LOC106574716 coding upstream 257069 5068836 ~ 5188461 (-)
LOC110511156 LOC106575856 coding upstream 385167 5217838 ~ 5225285 (-)
LOC110517120 LOC106576008 coding upstream 397321 5229992 ~ 5652429 (-)
G1512646 NA non-coding downstream 13262 4771618 ~ 4818448 (-)
LOC110528894 NA non-coding downstream 15865 4812063 ~ 5492191 (-)
G1512764 NA non-coding downstream 49136 4777169 ~ 4782574 (-)
G1512758 NA non-coding downstream 75088 4755041 ~ 4756622 (-)
G1512781 NA non-coding upstream 15521 4848192 ~ 4921456 (-)
G1512807 NA non-coding upstream 106076 4938747 ~ 5502542 (-)
G1512808 NA non-coding upstream 111730 4944401 ~ 4944740 (-)
G1512595 NA non-coding upstream 131039 4963710 ~ 4964290 (-)
G1512817 NA non-coding upstream 140692 4973363 ~ 4974003 (-)
G1510865 NA other downstream 1625787 3205375 ~ 3205923 (-)
G1510645 NA other downstream 1952333 2878653 ~ 2879377 (-)
LOC110517047 LOC106574932 other downstream 2492154 1803391 ~ 2339987 (-)
LOC110495376 pcdh17 other downstream 3666288 1004783 ~ 1165747 (-)
G1509514 NA other downstream 3689321 1141548 ~ 1142389 (-)
G1512635 NA other upstream 2399 4835070 ~ 4841794 (-)
G1512560 LOC106574716 other upstream 476890 5281447 ~ 5321420 (-)
LOC118941221 NA other upstream 576320 5408991 ~ 5718855 (-)
LOC110515909 LOC106592258 other upstream 965117 5493050 ~ 5870220 (-)
LOC110495369 lims1 other upstream 1076728 5898100 ~ 5913381 (-)
LOC118941076 NA coding downstream 722483 4087675 ~ 4088497 (-)
G1512655 NA non-coding downstream 69483 4663120 ~ 4741497 (-)
G1512750 NA non-coding downstream 75860 4734798 ~ 4735120 (-)

Expression


Co-expression Network