LOC110528776


Basic Information

Item Value
gene id LOC110528776
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4834342 ~ 4855537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951269.1
gattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGATACCACGTTGAGACATTCTCTACACCCAGAGAGCAACAGCAGGAAGATCAGAGAGCTAAGAGGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTGTCAAAGCTAAAAATACACctaaaaatacacacaggagagaagccatactcctgctcagactgtggaaaatgcttcacaacatcaactgatcTAAAacttcatcagagaacacacaccggagagaagccatactcctgctctgactgtggggcgaGTTTCTCTCATCTGGGCAccttaaaaacacaccaacgtatacacacaggagagaagccttactcctgctctgactgtggaaaatgcttcacaacatcaactgatctaaaagttcatcagagaactcacactggagagaagccttactcctgctctgactgtggaaaatgcttcacaaGGTCAACTTatctaaaagttcatcagagaacacacacaggagaaaagccttactccTGTTCTGACTGTGGTGAGAGATTCTCTCAAATGAGCACCCTAAAATCACACAAACAAGTAcatactggagagaagccttactcctgctctgactgtggagtGAGTTTCTCTCGACTGGATAccttaaaaacacaccaacgtaTCCATACAAGAGAAAAGCCTTACTTCTGCCctgaatgtgggaagagtttctcccTATCGAGTACCTTGAaatcacatgaacgtatacatacaggagagaagccttactcctgctctgactgtggagtGAGTTTCTCTCGACTGGATAccttaaaaacacaccaacgtatccatacaggagaaaagccttacttCTGCCCTGAGTGTGGAGAGAGATTCTCTCAAAAGACCAGCTTAAAAGCACACCAAttaatacatacaggagagaagccttacttctgctctgattgtgggaagagtttctcccTGTCGACTACCTTGAaatcacatgaacgtatacatacaggagagaagcctcactcctgctctgactgtggaaaacgTTTCTCCCGATCGGGTACCTTGAaatcacatgaacgtatacatacaggagagaagccttactactGCTCTTTCTGTGGAAAACGTTTCTCCCGATCGGATACCTTGAaatcacatgaacgtatacatacaggagagaagccttacttctgctctgactgtgggaggAGTTTCTCTGACAAGAGCAacttaaaaacacaccaacgtatacaTTAACTTCATGTGGGTACCTGGGACTGTTGCGTCCCACCTGTTCAACATCCGGGGAAATTGTAGAGTGACCAATTCAAATttaattactataaatatttacatttcatgaaatcacaagtgtaatacatcaaaataaagcttaacttgttaATCTAGCCGctatgtcagatttaaaaaaggctttaaggcg
>XM_036951270.1
gattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGATACCATGTTGAGACATTCTCCACATCCAGAGAGCAACAGCAGGAAGATCAGAGAGCTAAGAGGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTATCACAGCTAAAAATACACctaaaaatacacacaggagagaagccttactcctgctctggctgtggaaaatgcttcaaaacatcaactgagctaaaacgtcatcagagaacacacacaggagacaagCCGTATAACTGCTCTGAGTGTGGAACTAGTTTCTCTAAATTTTCCATcttaaaaacacatgaacgtgtacatacaggagagaagccttacgtctgctctgactgtggaaaatacttcacaacatcaactcatctaaaagttcatcagagaacacacacaggggagaagccatactcctgctctgactgtggaaaactttttaaaacatcaaatgagctaaaagttcaccagagaacacacacaggagagaagcctttcttctgctctgactgtggggcaAGTTTCGCTCAGCTGGGCAccttaaaaacacaccaacgtatacaCTCAGGAGCGAAGCCttattcctgctctgactgtggaaaatgttttaaaacatcaaaagagctaaaagttcatcagagaacacacacaggagagaagccttattcctGCACTGACTGTGGAAAATACTTCACAACATCAACTCATCTaaaagttcaccagagaacacacacaggagagaagccttattcctgctctgactgtgtaaaatgttttaaaacatcaaaagagctaaaagttcatcagagaacacacacaggagagaagcctttcttctGCCCTGACTgtgtaaaatgttttaaaacatcaacTCAGCtcaaagttcatcagagaacacacacaggagagaagccttacgtctgctctgactgtggaactaGTTTCTCGCATCTTTCCAACTTAAaatcacatgaacgtatacatacaggggagaagccatactcctgctctgactgggGAAAATGCTTCAAAACGTCAACTGTGCTaacagttcatcagagaacagACACAGGAGGGAAGCCttattcctgctctgactgtggaaaaagttttaaaacatcaaataaGCTTTAAGttcaccagcgaacacacacaggagagaagccttattacTGCTCTGTTTGTGTAAAATGCTTCAAAACAGCAACGAAGCTAATAGTTCATCAGAGAAAACACGCATGAGAGAAGCCTGCTTACGTCTGCTCTGACTTTTGGGTGAGTTTCTCTCACCATAGCAACTTAACACACCAATGTagtcacacaggagagaagtctTACTCCTGCTCTGTGGAAAGGTGGGCGTTTAACTCAAACTTCTAGCCAAAGGCTGCTGTGTTTAGAATCTCAtcaaggaggactgtagcattttagctaatcagcaactttgcaactacttacttactactttttagctattacttagcatgttagcttagcatgcaactttgcaactacttactactttttagctattacttagcatgttagcataTCATACATATTACaagttcgtaacatattgtatgaatagCAATGCGTAAAATAACGTaagaattgtaattcgtaacatacgATACTTCCTAGAAGTTGTATTATACTGAACAATTTaaacacaacaatttcaaagatttataGTTTGtatcaggaaatcagtcattttaaataagaggccataatctatggatttcacatgactgggcaggggagagagaataaagtagacggcaCGGGTCAAAGTAATTGATTTATGACCCTGTGTCATGATGACGTGTACATGTCCAAATATGGGCCTCCGGCCAAGCCATCCTGTTCCTGTGGTCACGTGTTAGAGGgtgtgtgttattttatatctatattgcATCCTTTGAAGTAGTCATGGTGATTGATGTCTAGGGGCCTGGTTGAACTGGGGGGGTTGAGTGTTTGAACTTTTTAACGTGTATGTCCCCCACCCCCAGTTTTATTGCCCTTATGGTTGTTATCTGATGAAGCAGGAATGTCCTGGGGTATTGGCTGTGGCATATGCATTTTAAATATCCAGAACAAGGCCTGTCACAaatattaccgaaggtggctccccttcttgttcgggtggcgctcggcggccgtcgtcgccggtctactagtaTTTTACCTAAGGGTACTATTTTTGTTTTTATAGTTACTCCTGTGTTGGGTATAACTATTTTGTTCCTTTGattttggacattaaagcgtgttttttcccacatcctttgctctctgcgcctgactccacacccattcactcattgagcgttacagtctgaatatttatgcaaataaggtattcaTTTGTATAAATTGACAAATATGTAAAAaacttttttcactttgtcattatgtgtatattgatgaggggtaaaaaatgcatttaatcaatttttgtataagcctgtaacgtaacaatatgtggaaaaagtcaaggggtcttgtATAATGCCCTGTATATGCTTTAAACTACAATTTAAGGATCTGAAGTGGTAAACACAAAGGCATAATGTGAAATGCATGT

Function

NR:

description
zinc finger protein 624-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951269.1 False 1564 mRNA 0.43 2 4834342 4855537
XM_036951270.1 True 2731 mRNA 0.41 2 4844093 4855537

Neighbor

gene id symbol gene type direction distance location
LOC110516780 NA coding downstream 1671 4810980 ~ 4833702 (-)
LOC118941021 NA coding downstream 30695 4791957 ~ 4803647 (-)
LOC110516275 LOC106574953 coding downstream 49786 4583805 ~ 4784556 (-)
LOC110528793 LOC106594540 coding downstream 253748 4569056 ~ 4580594 (-)
LOC110512986 pcdh9 coding downstream 537704 3745732 ~ 4296638 (-)
LOC110528886 LOC106592258 coding upstream 100913 4956450 ~ 5097338 (-)
LOC110514545 LOC106574716 coding upstream 234203 5068836 ~ 5188461 (-)
LOC110511156 LOC106575856 coding upstream 362301 5217838 ~ 5225285 (-)
LOC110517120 LOC106576008 coding upstream 374455 5229992 ~ 5652429 (-)
LOC118941224 NA coding upstream 411611 5267148 ~ 5267312 (-)
G1512646 NA non-coding downstream 15894 4771618 ~ 4818448 (-)
LOC110528894 NA non-coding downstream 18497 4812063 ~ 5492191 (-)
G1512764 NA non-coding downstream 51768 4777169 ~ 4782574 (-)
G1512807 NA non-coding upstream 83210 4938747 ~ 5502542 (-)
G1512808 NA non-coding upstream 88864 4944401 ~ 4944740 (-)
G1512595 NA non-coding upstream 108173 4963710 ~ 4964290 (-)
G1512817 NA non-coding upstream 117826 4973363 ~ 4974003 (-)
G1512844 NA non-coding upstream 178945 5034482 ~ 5048037 (-)
G1510865 NA other downstream 1628419 3205375 ~ 3205923 (-)
G1510645 NA other downstream 1954965 2878653 ~ 2879377 (-)
LOC110517047 LOC106574932 other downstream 2494786 1803391 ~ 2339987 (-)
LOC110495376 pcdh17 other downstream 3668920 1004783 ~ 1165747 (-)
G1509514 NA other downstream 3691953 1141548 ~ 1142389 (-)
G1512560 LOC106574716 other upstream 454024 5281447 ~ 5321420 (-)
LOC118941221 NA other upstream 553454 5408991 ~ 5718855 (-)
LOC110515909 LOC106592258 other upstream 942251 5493050 ~ 5870220 (-)
LOC110495369 lims1 other upstream 1053862 5898100 ~ 5913381 (-)
LOC118941020 LOC106595074 other upstream 1103254 5956579 ~ 5961996 (-)

Expression


Co-expression Network