LOC110528775 (LOC106575958)


Basic Information

Item Value
gene id LOC110528775
gene name LOC106575958
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4880668 ~ 4933600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528775
CTTCTACAGTTTATTAAccttacagtaggtggcggcagaCACGTTATATTTGTGTAAATGTCAGTATACCAGAGAATAAGAATACGATGATGCTGTTGAACATGTCGTAGTTGGGAACAGGAAGTTTCGGGTCGAAACgacagagctgtgttgttgtgtCGATAGTGGTTGTGTCCGTTTCAAATGTATCATTGTAGaccgactcagattaagtctgaggccggcaacatcaacagtgaggacaaacccagcctgtctctctccttccacactgagtagaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatggaaTCAGTGAAGCtagaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagaagattagGACAACTGTTAGTCATGGATACCACGTTGAGACATTCTCTACACCCAGAGAGCAACAGCAGGAAGATCAGAGAGCTAAGAGGTCTCATCACTGCCCACATTGTGAAGAGATTTTCCCATTTCTATCAAAGCTAAAAATACACCTAAAaatgcacacaggagagaagccatactcctgctcagactgtggaaaatgcttcacaacatcaactgatcTAAAacttcatcagagaacacacaccggagagaagccttactcctgctctgactgtgggcgAGTTTCTCTCATCTGGGCAccttaaaaacacaccaacgtatacacacaggagagaagccttactcctgctctgactgtggaaaatgcttcacaacatcaactgatctaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaaatgcttcacaacGTCAACTTATCTAAacgttcatcagagaacacacacaggagagaagccttattcctgctctgactgcGGAAAAAAATTTTAAACATCAAAAGAGCTAAaggttcatcagagaacacacacaggagagaagcctttcttctgctctgactgtggggcgaGTTTCTCTCATCTGGGCAccttaaaaacacaccaacgtatacacacaggagagaagccttactcctgctctgactgtggaactaGTTTCTCTCAACTTTCCCACTTGAAATCACATGAACgtaaacacacaggagagaagccttacatctgctctgactgtggaaaatgcttcaaaacatcaactgagctaaaagttcaccagcgaacacacacaggagagaagccgtactactgctctgactgtggaactagtttctctaaattttcccacttaaaaacacatgaacgtatacatacaggagagaagccttacgtctgctctgactgtgtgGCGAGTTTCTCTCATCTGGGCACCTTAAAAACACACCAActtatacacacaggagagaagccttacgtctgctctgactgtggaaaatgcttcacaacatcaactcatctaaaagttcatcagagaacacacacaggagagaagccgtattactgctctgactgtggaactaGTTTCTCTCAACTTTCCCACTTAAaatcacatgaacgtatacacacaggagagaagccctattactgctctgactgtggaaaacgttttaaaacatcaactgagctaaaagttcatcagagaacacacacatgagAGATGCCTGCTTACGTCTTGTCTGATTATTGGGTGAGTTTCTCTCACCATAGCAACTTAACACACCaatgtatacatacacacaggggagaagccttactctGTGGAGAGGTGGGCTTGTAAGTCAAACGTCTAGCCAAAGGCtgcgtgtttgaatctcatcagaGAGGACTTTAGCATTTtaactaattagcaactttgcaacttcTTACTAATTTTTTAGCTATGtcagcatgttagctaacctttcccctaaaCCCATTTAACTCTACCTTAAACCCCTCACCCCTAACCTagcaacaacaaattggaattcgtaacatatcatacatattacaagtttgtaacatattgtatgaatagCAATGCGTAAAATAACATACAAATCGTATCATACTGAACAACAAtctaaacgcaacaatttcaaagatttacagtttgtataaggaaatcagtcaattgaaataaatgaggccccaatctatggatttcacatgactgggcaggggctcaGGCATaggcccacttgggagccaggcccagccaatcagcacGAATTTATCCCCACAAAaggtctttattacagacagaaatacaactCAGCCCCCTcccagacaatcctgcaggtgtaGAGGTACTTGGGCTGCCGTGGTTACATGtgatctgcagttgtgaggccggttggatgtcctgccaaattctctaaaaggacgttagaggtggcttatggtagagatataAATATTGAGTTCTCCGGCACCAGCtcgggtggacattcctgcattcatCATGACAATTGCACATCCCctgaacttgagacatctgtgacattgtgttgtgtggccttttattgtccccctgCACAAGGTGTActtgtgtaatgataatgctgttttatcagcatattgatatgccacacctgtcaagtggatggattattttgacaaAGGCTGAAATGCTCatgaacagggatgtaaacaaagttgtgcacaacatttgagagacgTTAGCTGACGTTGATGGAttgatggatttttttttatttcagctcatgaagccAACACTTTATGtttagtttatatttttgttcaattttTCAGGGAAACAAAGGTTCAATAACATACTAAAATGATGTTTTTTTGTATAATAGAATACgttttgctctgagaccaggttgtcccTCTGCAGTATTATGTGGGAAGGAGCTATTTTACAATGTTTTAaatttatttattgaacctttgtttaactaggcaagtcagttaaggacaaattcttatttacaatgatggcctaggaacagtgggttaactgccttgttcagagtgTGATGATCACTTTTCACCATTAGTTTGGTGGGGATTGTTATTCAACTTAATTTAATGATACACAGCTTATGAAATGAATACATGTGCTTATTAATTGTCTTTAAAACTAGATTAGTTATTTTAGTTACTGATCATGAATGTGTTTGGATAACTGCATTGAAGCAAACTTTATTGATCTGCCAATGAAAAATAAAGTTACATGAATATGTA
>TU1729908
CGTAGTTGGGAACAGGAAGTTTCGGGTCGAAACgacagagctgtgttgttgtgtCGATAGTGGTTGTGTCCGTTTCAAATGTATCATTGTAGGTATGTAATAGCATGTTTAAACTTTCTAATGCCGAGAGAATATATAACATGCTAGGTAACAAATCCGTCAATGTATTATCACGTTTGGTAAAGGTTTTAATTGTATGTGTTATTTTGGGGTCAAATCGAGTGAGTGAAGAAGGTGATTAAAAACGATTTTTCAAGTCGCATAGGTAGACTTCGGGTTTGTCTGAGTGTATGTATATAATTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528775 False 3218 mRNA 0.37 3 4880668 4890985
TU1729908 True 303 lncRNA 0.37 2 4880773 4933600

Neighbor

gene id symbol gene type direction distance location
LOC110516278 LOC106600620 coding upstream 132425 4654041 ~ 4748243 (+)
LOC118941040 LOC106593609 coding upstream 255811 4618088 ~ 4624857 (+)
LOC118941057 NA coding upstream 1580440 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 1666214 3214038 ~ 3214454 (+)
tdrd3 LOC106592742 coding upstream 2426898 2377933 ~ 2453770 (+)
LOC110495595 LOC106574881 coding downstream 4929 4895914 ~ 5043592 (+)
LOC118941222 NA coding downstream 92975 4944941 ~ 5000801 (+)
LOC110510710 LOC106575389 coding downstream 261944 5152929 ~ 5739611 (+)
LOC118941027 NA coding downstream 376823 5267808 ~ 5275200 (+)
LOC110513970 LOC106575958 coding downstream 570917 5461902 ~ 5702970 (+)
G1512118 NA non-coding upstream 3501 4876875 ~ 4877167 (+)
G1512095 NA non-coding upstream 21565 4824337 ~ 4859103 (+)
G1511974 LOC106592258 non-coding upstream 58596 4774144 ~ 4822072 (+)
G1512080 NA non-coding upstream 59214 4775576 ~ 4821454 (+)
G1511972 NA non-coding upstream 64719 4813412 ~ 4815949 (+)
G1512127 NA non-coding downstream 23066 4914051 ~ 4914678 (+)
G1512130 NA non-coding downstream 59999 4950984 ~ 4952108 (+)
G1512167 NA non-coding downstream 184752 5075737 ~ 5176509 (+)
G1512113 NA other upstream 12660 4865995 ~ 4868008 (+)
G1512020 NA other upstream 262716 4610018 ~ 4617952 (+)
G1511398 NA other upstream 595724 4281416 ~ 4284944 (+)
G1510639 NA other upstream 2006502 2872394 ~ 2874290 (+)
G1510527 NA other upstream 2170921 2708713 ~ 2709747 (+)
G1512182 NA other downstream 213102 5104087 ~ 5106088 (+)
G1512205 NA other downstream 351749 5242734 ~ 5243427 (+)
G1512309 NA other downstream 716923 5607908 ~ 5613036 (+)
LOC110495587 LOC106592870 coding downstream 592763 5526363 ~ 5637190 (+)
G1512168 NA non-coding downstream 147048 5080648 ~ 5172352 (+)

Expression


Co-expression Network