LOC118941222


Basic Information

Item Value
gene id LOC118941222
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4944941 ~ 5000801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118941222
aaaacttttccaaaagaaaaaaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactCCACGCATCGACCTGGTATTGCAGTACTTCCAGGAACGGTGCACCCCCT
>TU1729950
tatagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctctctttttcccattcctccttgcaaaacagcttgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacaatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactCCACGCATCGACCTGGTATTGCAGTACCACCGCTGGGCCAATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118941222 False 176 mRNA 0.43 1 4983960 4984135
TU1729950 True 295 lncRNA 0.46 3 4944941 5000801

Neighbor

gene id symbol gene type direction distance location
LOC110528775 LOC106575958 coding upstream 92975 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 235717 4654041 ~ 4748243 (+)
LOC118941040 LOC106593609 coding upstream 359103 4618088 ~ 4624857 (+)
LOC118941057 NA coding upstream 1683732 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 1769506 3214038 ~ 3214454 (+)
LOC110510710 LOC106575389 coding downstream 168794 5152929 ~ 5739611 (+)
LOC118941027 NA coding downstream 283673 5267808 ~ 5275200 (+)
LOC110513970 LOC106575958 coding downstream 477767 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 542228 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 589256 5573391 ~ 5576479 (+)
G1512130 NA non-coding upstream 31852 4950984 ~ 4952108 (+)
G1512107 NA non-coding upstream 63982 4854714 ~ 4919978 (+)
G1512101 NA non-coding upstream 65835 4884861 ~ 4918125 (+)
G1512127 NA non-coding upstream 69282 4914051 ~ 4914678 (+)
LOC110495595 LOC106574881 non-coding downstream 30839 4895914 ~ 5043592 (+)
G1512167 NA non-coding downstream 91602 5075737 ~ 5176509 (+)
G1512168 NA non-coding downstream 96513 5080648 ~ 5172352 (+)
G1512171 NA non-coding downstream 100623 5084758 ~ 5084998 (+)
G1512113 NA other upstream 115952 4865995 ~ 4868008 (+)
G1512020 NA other upstream 366008 4610018 ~ 4617952 (+)
G1511398 NA other upstream 699016 4281416 ~ 4284944 (+)
G1510639 NA other upstream 2109794 2872394 ~ 2874290 (+)
G1510527 NA other upstream 2274213 2708713 ~ 2709747 (+)
G1512182 NA other downstream 119952 5104087 ~ 5106088 (+)
G1512205 NA other downstream 258599 5242734 ~ 5243427 (+)
G1512309 NA other downstream 623773 5607908 ~ 5613036 (+)
G1512118 NA non-coding upstream 67774 4876875 ~ 4877167 (+)

Expression


Co-expression Network