LOC110511156 (LOC106575856)


Basic Information

Item Value
gene id LOC110511156
gene name LOC106575856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5217838 ~ 5225285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951267.1
GCTATCAACCTCGTGTTATCTTAAATCTGCACAGACAAGTAATTGCCTTTTACACACTATGTGCCACGTCTACGAAAAGGATGTACTTCTCTATAAAAGTGGAGACCCGTCACTGTTTGTTGGGCCTTAACTGCACAACTGTTGAAGTGCATAGTTGACTGCTCCATTTTAGCTAATCTTATAATAAAGTGTTGTTTGAAAGAATATGCAGTCTCTCTTATAGAATTTCTCTGACAAGCCGGCAACATCGAGAGTGAGagtgaggacaaacccagcctgcctctctccttccacaccaagtccaaacctacagtcactggaggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaggaggagaagattgggAAATCTGTTTCTCATGGTAACATTGAGACATTCCCGACATCCAGAGAGCAACAACAGGAAGATCACAGATCTAAGAGGTCTCACCAATGCCCACATTGTAAGAAGATTTTCCCAATTCTTTCAAAGCTAAAAATACACctaaaaatacacacaggagagaagtcgTACTCCTGCTCTGATTGTGGGTTGAGATTCTCTCAACAGAGCAGcttaaaaacacaccaacgtatacacacaggagagaacccTTACTCCTGCTCATACTGTGGGTGGAGATTCTCTCAACGAAGCCACTTCAAATcacaccaacgcatacacacaggagagaagccttactcttgCTCTGAatgtggaaaatgcttcacaacatcatcTGACCTAAcagttcaccagagaacacacacaggagagaagcctttttcctgctctgactgtggggggAGATTCTCTCGACGGAGCAGTTTAAAAATACACCAacatatacacacaggagagaagccttacttctgctctgactgtgggaaaagtTTCTCCCTATTGGATACTTTAAAAGCACATGAACGTGTAcatacaggagaaaagcctttttcctgctctgactgtgggaagagtttttctCAACGGAGCAACTTAAAAATACACCAACGTTTACATACAGGTGAAAAGCCTTACTCCTGTTCGGACTGTGGAAAATGTTTCACACAATTTGATACGTTAAAATGTCACCAgcgtatacatacaggagagaagccttactcctgctctaaatgtgggaagagtttctctctACAGAGCAGCGTAAAATCACACCAACATATACACACAGGAGACAAGCCTTACACTTGCTCTGACTGTGGTAAATTCTTCCCAACATCATCTGCGCTAAatgttcatcagagaacacacaccggAGAGAGGCTTTCCTTCTgttctgactgtggaaagagtttctctcaacaCAGCAGCTTAAAGGAACACCAACgtttacacacaggagagaagccttactcctgctctgactgtgggaagaattTCACTCGACACAGCAGCTTAAAGAATCAccaacgtatacacacaggagagaagccttatccCTGCTctgaatgtgggaagagttttacaaCATCAAGTGCTCTGACAGTTCATCAGAGAGTGcacacaggtgagaaaccttactcctgctctgactgtggggggAGTTACTCTCGACGGGGAAACTTACAAACACACCATCGTATACATTCGGGAGAGAAGCCGTACTCCTGTTCTGACTGTGggaaatgcttcacaacatcaagTGCTCTGAAAGTTCATCAGAGAGTGCACACAGGAGATAATCCTTAATCCTGCTCTGATTGTGGGGCGAGATTCTCTCAACAGAGCAACTTAAGCACACCAACGGATACAAACGAGTGAAGCCTTTTGcagattaaaaacattttttgctgGATTGAAAATGGACCCCTGTTTAAAGTAACCTCCCTTTTTGGTAACAAAAGGAGAGAAGCTTCATCAGTTCTCTCGGACCAGCTAAGATTAAAGTCACTCCATCACTTAATTCTCATCTCATAAAATAATTGGTAACAGTGAATTGGATCAAATGAAGAAAGTGTAGAACACTCTATTGTTGTCCTATTGTTTCTCACTGTGAGAGAACTGTGCAGAGGAAAGGGAGCGTTATAGAATGTTATCCTCTTTACTTTACTGATCAGTGTGCACTTTGTCAGTTTTGGTGTGTTTTATTAGCTTCTACTGCAAAAAATATTGAGAGGACCTTGGATTTGCCCTTAGCGTTGAATATACTGCTTCCGTATGAAGTCGTCTGTGGGACTGAGatagtagacacaacatgtatcagatagagatggtgtgatccGTTTTCTCCATTCGTTTGGGtggattattttttttactactaAGGTATGTTATTTATAATGAGGGATACCTGGAGCAAATTGTATCtctgaaataaaaatgtatgccCCTCCCTtcactaaaatatatttttccccGACCCTCTCTGAACACTTGGGGAAAAACAAGTGACTCTCCCCTATACCCAAAATTATAATTAAAACataaagtggatagcagagaacatgcctATTGTTTACCCTCACTCCCAGaacagaccagagccttagatatgcagttttagaaacaGTTCTTCATTTTGTAAGCGTCACATGTCAAAGGTTGTGGATTCCCAGAACACCGTGTACGAGGTTGGGGTGAAAATAGATCCATTATAATGTAAGCACTGCATGAATCTCATCTTATTTCCATAAAAAAAAATAGCCTTTTAGAaactcatttcatgcaattctacatcatTTTACACGACTGGAGACAATCCAAATATGTGTTTTTATACCAGAACAGTGCGCAATAATTAATGAGGCATACTGCAGCACCAAAGAGCTTTTGATTTCAATACAGGCTATTGTTCAAAAAAATTCTACAACGGGTTGGTCAAAACAAGCTTTGTGATTGGTTAAGACGTGTTCTAAGCCATTCTAAAAACACTGTTTAGCACAGATGATGCAAAAACGGGAATCTTGTTTCCTGTTCCGTCTGACAGATCCCTGCTCATCCACTGGCCcatcagcccagccagccaattcattaacttgatctccactgtaaAAGGCATCTAGACATTATTTCCCCTTGCTTCTAGCCTAACATTTTTGTTTGCATCAATGGGGGGGTTGTGCAAACGTTGCTGTCTTTCTCtcaacatttgcaacattgtttcaatattgaaattcgatATGCACTATCCTATTGAGAATTAACGTGTCAGGACGAGACTGACTTCTtgtctcagccagtcgaaatcatgaatccaCAAAATctgtatggatatatacaaaggaatgtcaatttaaaactaggtcaaattaaattaaaagcagttactttgctgttattctagcTGCATGGTTTGATGTGACTGTTAACAGTAGTTCGCTAGCTAGCAGGCAAGGGATAAGAGTGTTGCCAGACAGCATGACAACGGAACATTTAGAACTGATGGATTCTATTCAAATGTAACATGTTTCAAGTTAAACTGTAGTTAGTGTGTATCCTGTTTAGTGAATAATTACTGTGAGTATTAATGGAGTTTAGGACATGAAACTGTGTGTATGCTAATTTAGAAATGTTGACCCAATCAGAGAAGAGGAAATTGCCTCGGCTCAGAGAGCAGGGTCAGGCCCAGAACAGAAGATGGACGGGTTGGGATTCTGACATCTGGCTAAACaaagagaggaccatggacattccacaggggaaaagagggaaacTCATTGGGGCCATAAAATGTAAAGCTGGGGAGGTGACGCCTATAAGGGAAGAGTATAAAATGTGTTGTGAGCTTTCTAAATGCATGCACTCAGCTGACTGTATCATTTGGTATTAAACACTCTCTTAAACTT

Function

NR:

description
zinc finger protein 135-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951267.1 True 3875 mRNA 0.41 2 5217838 5225285

Neighbor

gene id symbol gene type direction distance location
LOC110514545 LOC106574716 coding downstream 29377 5068836 ~ 5188461 (-)
LOC110528886 LOC106592258 coding downstream 120500 4956450 ~ 5097338 (-)
LOC110528776 NA coding downstream 362301 4834342 ~ 4855537 (-)
LOC110516780 NA coding downstream 385167 4810980 ~ 4833702 (-)
LOC118941021 NA coding downstream 414191 4791957 ~ 4803647 (-)
LOC110517120 LOC106576008 coding upstream 4707 5229992 ~ 5652429 (-)
LOC118941224 NA coding upstream 41863 5267148 ~ 5267312 (-)
LOC110517117 NA coding upstream 56128 5281413 ~ 5294676 (-)
LOC110513142 NA coding upstream 74187 5299472 ~ 5341735 (-)
LOC118941023 LOC106575981 coding upstream 151303 5376588 ~ 5388693 (-)
G1512855 NA non-coding downstream 44359 5080940 ~ 5173479 (-)
G1512678 NA non-coding downstream 111684 5103107 ~ 5106154 (-)
G1512626 LOC106575349 non-coding downstream 137945 4584978 ~ 5079893 (-)
G1512850 NA non-coding downstream 156879 5059459 ~ 5060959 (-)
G1512610 LOC106592258 non-coding upstream 20590 5245875 ~ 5249628 (-)
G1512854 NA non-coding upstream 21624 5246909 ~ 5247836 (-)
G1512888 NA non-coding upstream 39205 5264490 ~ 5265565 (-)
G1512560 LOC106574716 non-coding upstream 56162 5281447 ~ 5321420 (-)
G1512661 NA non-coding upstream 147585 5372870 ~ 5373663 (-)
G1512635 NA other downstream 376044 4835070 ~ 4841794 (-)
G1510865 NA other downstream 2011915 3205375 ~ 3205923 (-)
G1510645 NA other downstream 2338461 2878653 ~ 2879377 (-)
LOC110517047 LOC106574932 other downstream 2878282 1803391 ~ 2339987 (-)
LOC110495376 pcdh17 other downstream 4052416 1004783 ~ 1165747 (-)
LOC118941221 NA other upstream 183706 5408991 ~ 5718855 (-)
LOC110515909 LOC106592258 other upstream 572503 5493050 ~ 5870220 (-)
LOC110495369 lims1 other upstream 684114 5898100 ~ 5913381 (-)
LOC118941020 LOC106595074 other upstream 733506 5956579 ~ 5961996 (-)

Expression


Co-expression Network