LOC118941027


Basic Information

Item Value
gene id LOC118941027
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5267808 ~ 5275200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037318.1
acgacagatttgtaccttgtcagctcgggggtttgaactcgcaaccttccggttactagtccaacgctctaaccactaggctaccctgcctataTATATTCAATGTTATCTTATAAAGAAGGGTTGAATTTGGACTTGTCAGTAGTCATTAGAAGTTAGAAACAGGAATGTTTATTTAGGGTTTAAACTAACGGGTTGCCTCCCACAATGTAGACAATGGCTGTTGCGATTGAACCACATGATTAAAGATGCTGTCTTTGTCTCAGCTTAGACTTCCCTTAGAGTGTACGTCAGAGGTTCAAAcagtagaacccagttcctacattttaaaatatatatttttttaatcaatcaaaactatgctacattttatctctgagGCCATCAGGATGACGAATCAGAGCaacattactgaatgtaagtacattatttaccttcagaggggAATGTATTAAACCAGTTGCCGAgataagtgttttgttgttgtgcactctcttCAAACAATACCAAGCATGGTATTGTTTCTctgtaatggctactgtaaattggacactgtagttagattaacaagaatgaaCAAGAATATAAATAAAGACCATATAAGGACATGTCTGTCCCGGAAAGTTGGCTGCTGTATACAgagtcattctagtcacattagagCACGTTAACAACAATAATCCCGGTTTAGGGACAGCAATCCCGTAGAGGTTTTAAACGGTATGTACTTAATATTTGAATGAAATAAAATGGTTTTAAAATTGTATCTCATCCCTTAATTAATGGGAagatctcgttctctctcccactccggTCTGTAACGAAGAAAAAATACGTTAAACAGCGATTCTCAGGAGCAAATCGCATGCAGCCAAACCCCGTCACATTATTGTAGACCTGACATACAGCCAAGAAGAATAACGGGGTCCAGGTGGACCCTGAACGGCTTCGGAAGAGCAGATGACACATCCGATGACACAGATGCAATTCTCCTGTACTGTACGAACGTTTTTTTCAAACACACCGAGAACAGAGGATTTACACGTCCGGTCGACTCCCCCGGAAACCTCCACCAGCTCGCTCCATATTTCTAACCCAAGCAAACAACGCACAACTCGGCACAAATACATTGCTCAGAATCAACCCCTCCGGAAAAGTACGACAGGATAGGGAATTTACGAGACGGCGCTCCATGGACACGGCTCCAACGAGACAGGCCTGGCAGAATCGGGAATCGGGAATTCTTGGTGACAAAAGTCAAGCCCCCCGGTTTACGCGATTCGTCAGAACAGCCCTCGTCAAAAAAGCAGAGACTCCTCCCCGGCGTATAACGGCACCGAAGACCTCACACATCTTAAGCGCGAGGAGGATTCCGGCTCACTGAACATTCCCAATGAAACAACCAAACCGGAGGATTTCAACGTTATAAATTACATTTCAGAGGCAGACGACCGGTTATCATGGGATGCGGCCAACCTTCTTGATTCTGCCAATTCTGTGGTGACAACAGATGGATCTGAAATAGAACAAGGTAGGTTTTTCACAGCCTTTTCCAGGGCTCTAAAATCCCGAAAGGTTTTGCTACACAGACGTCTGGGTGTTTTACTAGAGCGCCAATACCGTCAGGATATATCCTTCTGGCATAGAGCAATTCCACGTATGTTAAACAGCAATCCGATTAAAAAACGCAAATACAGGCGTTaaaagcatatacagtgccttgcgaaagtattc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611709

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037318.1 True 1734 mRNA 0.43 5 5267808 5275200

Neighbor

gene id symbol gene type direction distance location
LOC110495595 LOC106574881 coding upstream 224216 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 283673 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 376823 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 519565 4654041 ~ 4748243 (+)
LOC118941040 LOC106593609 coding upstream 642951 4618088 ~ 4624857 (+)
LOC110513970 LOC106575958 coding downstream 186702 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 251163 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 298191 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 316427 5591627 ~ 5593672 (+)
LOC110519537 LOC106592870 coding downstream 429551 5704751 ~ 5708466 (+)
G1511952 NA non-coding upstream 12017 5255402 ~ 5255791 (+)
G1512167 NA non-coding upstream 91299 5075737 ~ 5176509 (+)
G1512168 NA non-coding upstream 95456 5080648 ~ 5172352 (+)
LOC110510710 LOC106575389 non-coding upstream 111135 5152929 ~ 5739611 (+)
G1512171 NA non-coding upstream 182810 5084758 ~ 5084998 (+)
G1511882 NA non-coding downstream 6245 5281445 ~ 5324126 (+)
G1511895 LOC106574716 non-coding downstream 33471 5308671 ~ 5312593 (+)
G1511978 LOC106592258 non-coding downstream 49573 5324773 ~ 5329556 (+)
G1511982 NA non-coding downstream 74433 5349633 ~ 5747483 (+)
G1512243 NA non-coding downstream 140478 5415678 ~ 5416176 (+)
G1512205 NA other upstream 24381 5242734 ~ 5243427 (+)
G1512182 NA other upstream 161720 5104087 ~ 5106088 (+)
G1512113 NA other upstream 399800 4865995 ~ 4868008 (+)
G1512020 NA other upstream 649856 4610018 ~ 4617952 (+)
G1512309 NA other downstream 332708 5607908 ~ 5613036 (+)
LOC110518779 dis3 other downstream 902640 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 1123563 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 1165652 6404433 ~ 6459931 (+)

Expression


Co-expression Network