LOC110495587 (LOC106592870)


Basic Information

Item Value
gene id LOC110495587
gene name LOC106592870
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5526363 ~ 5637190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951178.1
AGGCCGTTAGCATGGTGCAGGTGCAGAtcgggtcaaagtagtggaatggggtagtgggtttttaatgattGTAGAGttcgttttttatttattttttaacgtTTTTGCTTTTCCCGTTTTCCCATGTTGTATTTTAAAGTGCAATGTGTTTATATTATAGTCCAGTTGGGGGCGGTAATGCTACATATTCGATTCCAACCGCCGTTAAACTCCAAAGCAGAGGAAGAAGTAGTTCCGGGGAAGCGCGCTCCATTCTTCAGATAAAGGAAGCGCTAGAACTGTGTTGTGAACACGGTATCCTTTGTGTCCATTATTACAGGCCAAATCAGATTAAGTCTGAGGCTggtaacatcaacagtgaggacagACCCAGcatgcctctctccttccacactgagtccaaacctacagtcacagggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaggaggagaaatcGGTTTCTCTTAGACAACTGGAATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaTCCAGCCtgtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcagggtccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagatAAGATTGAGAAATCTCTTTCTCATGGAGACCATGTTGAGACATTCTCTACATCCAGAGAGAAACAGCAGGAAGATCACAGAGCTAAGAGGTTTCACCACTGCCCACATTGTGAGGAGAATTTTTCAATTCTATCAAAGCTAAAATTACATGTAAAAATACACATAGGAGAGAATCTGTTTTCCTGTACTGACTGTGGGAAGAATTTCACAACCTCAAAGGCTCTGACAGTTCATCAGAGATTGCACAGAGGAGAGAAGTCATAcccctgctctgactgtggaaagagtttctctcaacTGTGCACCTTAAAAAGACATGAAcatatacatacaggagagaagccttactcctgctctgactgtggggcgaGTTTCTCTCAACTGTACAACTTAAAAAGACATGAACgcatacatacaggagagaagacttactcctgctctgactgtgacaAATGCTTCAAAAGATCAACTGCTCTAAaggttcatcagagaacacacacgggagaaaagccttactcctgctctgactgtgacaAATGCTTCAAAAGATCAACTGCTCTAAaggttcatcagagaacacacacaggagaaaagccttactcctgctctgactgtgggaggAGTTTCTCTAAACTGTACAActtaaaaacacatgaacgtgtacatacaggagagaagccttactcctgctttTACTGCGAAAAAATCTTCAGAACATCATCTGATcaaaaagttcatcagagaacacacacaggagagaagccttactcctgttCTGACTGTGGAAAGCGATACTCTCAACTGGGCCACTTAAAAACACATGAAcatatacatacaggagagaagccttactcctgctctgactgtgaaaAATGCTTAAAAACATCAGCTGAGcaaaaagttcatcagagaacacacacgggagagaagccttattcctgctctgactgtgaaaAATGCTTCAAAACATCAACAGATcgaaaagttcatcagagaatacacacaggagagaagccttactcctgctttTACTGTGAAAAATGCTTCAAAACATCAACTGATcgaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtgaaaAATGCTTCAAAAGATCAACTGctctaaaagttcatcagagaaatcacacaggagataagccttacacctgctctgactgtggaaagagtttctctcaactgggtgacttaaaaacacatgaacgtatacacacaggagagaagcctttctcctgctctgactgtgaaaaatgcttcaaaacatcaactgagcaaaaagttcatcagagaacacacacaggagagaagccttactcctgctctggcTGTGGAAAGAGATTCTCTCAACTGGGCCACTTAAGAAGACATGAACTTATACATACAGGAGTGAAGCCTTAcacctgctctgactgtggaaagagtttctctcaactgggtgacttaaaaacacatgaacgtgtacatacaggagagaaaccttactccTGCTTTTACTGTGAAAAAATCTTCAGAACATCAACTGAGCAAAacgttcatcagagaacacacacaggagagaagccgtactcctgctctgactgtggaaagagtttctctaAACTGGGGGActtaaaaacacatgaacgtatacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctaAACTGTACAACTTAAAAAGACATGAACGTATGCATATAGGAGTGAAGCCTTAATCCTGCTCTGATTGTGTAAAATGTTTCACAACATCAACTGACCTAAAAGTTTGTCagaattcacactggagagaagccttactcctgctcttaATGTGGCAAGAGTTTCTCCCGATTGGAAAATACATAGTTGACCGAAGCCTTATCAAAGCACTGACTGTGAGAAGATATTCTACAGATTTTTGCCATTTAAAAAGACACCAATGTGTACATAAAGGAGAGAAGCCTCATCAGCTCTCTCAGACCAGCTAAGATTAGACACTCCACTTTATTCTCATCTCATTAAATAATTGGCAACATTGAATTGGATCAAATGAAGCGTAGAACACTgtattgtaaaaaaaa
>XM_036951180.1
tcgttttttatttattttttaacgtTTTTGCTTTTCCCGTTTTCCCATGTTGTATTTTAAAGTGCAATGTGTTTATATTATAGTCCAGTTGGGGGCGGTAATGCTACATATTCGATTCCAACCGCCGTTAAACTCCAAAGCAGAGGAAGAAGTAGTTCCGGGGAAGCGCGCTCCATTCTTCAGATAAAGGAAGCGCTAGAACTGTGTTGTGAACACGGTATCCTTTGTGTCCATTATTACAGGCCAAATCAGATTAAGTCTGAGGCTggtaacatcaacagtgaggacagACCCAGcatgcctctctccttccacactgagtccaaacctacagtcacagggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaggaggagaaatcGGTTTCTCTTAGACAACTGGAATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaTCCAGCCtgtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcagggtccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagatAAGATTGAGAAATCTCTTTCTCATGGATACCATGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAGTTCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatctGTATTCCTgcactgactgtgggaagagattcacaaCATCAGCTcagctaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaCTCGAAATTTCTAAAACaacatgaacgtatacacacaggagagaagcctttctccTGCTcggactgtggaaagagtttctctcaacTGAGCCACCTAAAACaacatgaacgtatacacacaggagagaagccttactcctgctcagactgtggaaaatgcttcagAACATCACCTGAGCTAAACggtcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttactcctgctctgattgTGGAAAGAATTTCTCTCAATCGAGCCACCTAAAACAACATgaacgaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttactcttgctctgactgtggaaaatgcttcacgTATTTACATGATCTaaaagttcaccagagaacacacactggagaaaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttacttctgctctgactgtAGCGCGAGTTTCTCTCAACGGAGCCACCTAAAACaacatgaacgtatacacacaggagagaatccTTAGTCCTGCTCTGACTGTAAgaagagtttctctcaaatgggCCAGTTAAAAAGACACCAAGGTATACATCATGGAGAGTAGCCTTACtcttgctctgactgtggaaaatgatttaaatcATCAGCTGAGCTAAACGGTCATCAGAGatcacacacaggagagaagcctttcttctGCTCTTACTGTGGCAACAGCTTCTCCCGATTTGGGCAATGTAAAGACACACCAACGGATACATAGTTGACCGAAGCCTTATCAAAGCACTGACTGTGAGAAGAGATTCTACAGATTGGGCCATTTAAAAAGACACCAATGTATACATGAAGGAGAGAAGCCTCATCAGTTATCTCAGACCAGCTAAGATTAGTCACTACTCTTAATTCTCATCTCATAAAATAAATGGCAACGTTGAATTGGATCAAATGAAGAAAGTGTAGAACACTATTGTAATCATATTGTTTCTCACTGCGAGAGAACAATGCAGAGGAAAGGGAGCATCATAGAATGTTAGTCTCTCTTTACTGATCAGTGTGCATCTTGTCAGTTttttgctgtgttttttttttttttgcttccgTCCATAGACAAATCCCAGCTCTACTGGTACCAGCAGTACTGCACCTGtcaacgacacaagttgttctgcttccataagcacatccaatgctagcatcagtaattctccATTTGCTGTTaacccagctagcatggacactgggCTGCATCAGAATCACAACTGTCAGAGCTACTGCCTCCTTATCCGGCAAAACaccaaacaacagacagggatgtgcctttcctcagccacagtgtgtttatatctcacaactcgatgaaaccttcactattgcgcagacatttagaaacaaaacatgccaatttgaaaaataagccacaggagttttttcaGCGAGAGTTGAGactactttcgagtagtaagacatgtataaaagcaacagataccattaataagaaggcgCTAGAatcgtcttatatggtgagctatcgagtggctaggacaggcaagcaccatactattgtggaggacttaagtCTTCCTGCTTCCGCAGATATGGCTGGGGGGAAAAatcccaaaaaactatacagttttcacgacgcatcagtgacatggcagatgTTTggaacaattactgcttcgcctTACAAGCCAataattctatgcgttacagctagatgagtcaacagacgtggcg
>XM_036951179.1
tttattttttaacgtTTTTGCTTTTCCCGTTTTCCCATGTTGTATTTTAAAGTGCAATGTGTTTATATTATAGTCCAGTTGGGGGCGGTAATGCTACATATTCGATTCCAACCGCCGTTAAACTCCAAAGCAGAGGAAGAAGTAGTTCCGGGGAAGCGCGCTCCATTCTTCAGATAAAGGAAGCGCTAGAACTGTGTTGTGAACACGGTATCCTTTGTGTCCATTATTACAGGCCAAATCAGATTAAGTCTGAGGCTggtaacatcaacagtgaggacagACCCAGcatgcctctctccttccacactgagtccaaacctacagtcacagggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaggaggagaaatcGGTTTCTCTTAGACAACTGGAATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaTCCAGCCtgtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcagggtccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagatAAGATTGAGAAATCTCTTTCTCATGGATACCATGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAGTTCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatctGTATTCCTgcactgactgtgggaagagattcacaaCATCAGCTcagctaaaagttcatcagagaacacacacaggagagaagccttactcctgctctgactgtggaaagagtttctctcaCTCGAAATTTCTAAAACaacatgaacgtatacacacaggagagaagcctttctccTGCTcggactgtggaaagagtttctctcaacTGAGCCACCTAAAACaacatgaacgtatacacacaggagagaagcctttctccTGCTcggactgtggaaagagtttctctcaacTGAGCCACCTAAAACaacatgaacgtatacacacaggagagaagccttactcctgctcagactgtggaaaatgcttcagAACATCACCTGAGCTAAACggtcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttactcctgctctgattgTGGAAAGAATTTCTCTCAATCGAGCCACCTAAAACAACATgaacgaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacacaggagagaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttactcttgctctgactgtggaaaatgcttcacgTATTTACATGATCTaaaagttcaccagagaacacacactggagaaaagccttactcttgctctgactgtggaaaatgcttcacgTATTTAAATGTTCTaaaagttcaccagagaacacacactggagaaaagccttacttctgctctgactgtAGCGCGAGTTTCTCTCAACGGAGCCACCTAAAACaacatgaacgtatacacacaggagagaatccTTAGTCCTGCTCTGACTGTAAgaagagtttctctcaaatgggCCAGTTAAAAAGACACCAAGGTATACATCATGGAGAGTAGCCTTACtcttgctctgactgtggaaaatgatttaaatcATCAGCTGAGCTAAACGGTCATCAGAGatcacacacaggagagaagcctttcttctGCTCTTACTGTGGCAACAGCTTCTCCCGATTTGGGCAATGTAAAGACACACCAACGGATACATAGTTGACCGAAGCCTTATCAAAGCACTGACTGTGAGAAGAGATTCTACAGATTGGGCCATTTAAAAAGACACCAATGTATACATGAAGGAGAGAAGCCTCATCAGTTATCTCAGACCAGCTAAGATTAGTCACTACTCTTAATTCTCATCTCATAAAATAAATGGCAACGTTGAATTGGATCAAATGAAGAAAGTGTAGAACACTATTGTAATCATATTGTTTCTCACTGCGAGAGAACAATGCAGAGGAAAGGGAGCATCATAGAATGTTAGTCTCTCTTTACTGATCAGTGTGCATCTTGTCAGTTttttgctgtgttttttttttttttgcttccgTCCATAGACAAATCCCAGCTCTACTGGTACCAGCAGTACTGCACCTGtcaacgacacaagttgttctgcttccataagcacatccaatgctagcatcagtaattctccATTTGCTGTTaacccagctagcatggacactgggCTGCATCAGAATCACAACTGTCAGAGCTACTGCCTCCTTATCCGGCAAAACaccaaacaacagacagggatgtgcctttcctcagccacagtgtgtttatatctcacaactcgatgaaaccttcactattgcgcagacatttagaaacaaaacatgccaatttgaaaaataagccacaggagttttttcaGCGAGAGTTGAGactactttcgagtagtaagacatgtataaaagcaacagataccattaataagaaggcgCTAGAatcgtcttatatggtgagctatcgagtggctaggacaggcaagcaccatactattgtggaggacttaagtCTTCCTGCTTCCGCAGATATGGCTGGGGGGAAAAatcccaaaaaactatacagttttcacgacgcatcagtgacatggcagatgTTTggaacaattactgcttcgcctTACAAGCCAataattctatgcgttacagctagatgagtcaacagacgtggcg
>TU1729966
acgtTTTTGCTTTTCCCGTTTTCCCATGTTGTATTTTAAAGTGCAATGTGTTTATATTATAGTCCAGTTGGGGGCGGTAATGCTACATATTCGATTCCAACCGCCGTTAAACTCCAAAGCAGAGGAAGAAGTAGTTCCGGGGAAGCGCGCTCCATTCTTCAGATAAAGGAAGCGCTAGAACTGTGTTGTGAACACGGTATCCTTTGTGTCCATTATTACAGGCCAAATCAGATTAAGTCTGAGGCTggtaacatcaacagtgaggacagACCCAGcatgcctctctccttccacactgagtccaaacctacagtcacagggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaggaggagaaatcGGTTTCTCTTAGACAACTGGAATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaaTCCAGCCtgtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcagggtccagagatggcatcagtgaagctggaagactgcagtcaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592258, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951178.1 False 2874 mRNA 0.42 4 5526363 5547958
XM_036951180.1 False 2991 mRNA 0.43 5 5526440 5637190
XM_036951179.1 False 3065 mRNA 0.43 4 5526450 5637190
TU1729966 True 617 lncRNA 0.47 3 5526461 5545525

Neighbor

gene id symbol gene type direction distance location
LOC118941027 NA coding upstream 251163 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 482771 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 542228 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 635378 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 778120 4654041 ~ 4748243 (+)
LOC110519537 LOC106592870 coding downstream 67561 5704751 ~ 5708466 (+)
LOC110512403 gas6 coding downstream 286313 5923503 ~ 5949854 (+)
LOC118941026 NA coding downstream 309557 5946747 ~ 5947078 (+)
LOC118941029 NA coding downstream 310352 5947542 ~ 5948154 (+)
LOC110519329 atp4b coding downstream 364554 6001744 ~ 6007442 (+)
G1512275 NA non-coding upstream 15201 5510885 ~ 5511162 (+)
G1512261 NA non-coding upstream 71817 5453597 ~ 5454546 (+)
G1512245 NA non-coding upstream 97991 5427362 ~ 5428372 (+)
G1512243 NA non-coding upstream 110187 5415678 ~ 5416176 (+)
G1511978 LOC106592258 non-coding upstream 196807 5324773 ~ 5329556 (+)
G1511955 LOC106574716 non-coding downstream 8634 5645824 ~ 5651171 (+)
G1511977 NA non-coding downstream 210639 5847829 ~ 5862162 (+)
G1512406 NA non-coding downstream 255417 5892607 ~ 5892871 (+)
G1512407 NA non-coding downstream 255795 5892985 ~ 5893193 (+)
G1512205 NA other upstream 282936 5242734 ~ 5243427 (+)
G1512182 NA other upstream 420275 5104087 ~ 5106088 (+)
G1512113 NA other upstream 658355 4865995 ~ 4868008 (+)
G1512020 NA other upstream 908411 4610018 ~ 4617952 (+)
LOC110513970 LOC106575958 other downstream 26778 5461902 ~ 5702970 (+)
LOC110518779 dis3 other downstream 540650 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 761573 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 803662 6404433 ~ 6459931 (+)
LOC110514219 LOC106594890 other downstream 913455 6493403 ~ 6573608 (+)
LOC118941022 NA coding downstream 27866 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 46102 5591627 ~ 5593672 (+)
G1512295 NA non-coding downstream 15354 5560879 ~ 5561973 (+)
G1512300 NA non-coding downstream 22953 5568478 ~ 5580047 (+)
G1512309 NA other downstream 62383 5607908 ~ 5613036 (+)

Expression


Co-expression Network