LOC118941025


Basic Information

Item Value
gene id LOC118941025
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5591627 ~ 5593672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037316.1
cttcacaacacataacccggtccagtcgagcctcactagccagatgaagctagttGGCTGCTTATAACGGAAACTTtcggcaacagggggctgagtcactggcttactggtgctcttccatgccatccttAGGAGGGGTGCATTACTTGAGTGTGTTGAGTCGCTgatgtggtcttcctgtctgggttggcgtccccccttgggttgtgccgtggcggagatctttgtgagctatactcgaccttgtctcaggatggacctgagccctaggaccatgcctcggaaatacctggcatgatgacttcttgctgtccccagtccacctggccgtgctgctgctccagtttagtTTCAACTGTTCAACTGCCTGCGGTTCaactgcggctatggaaccctgacctgttcaccggacatgctaccttcccagacctgctgttttcaactctctagagacaacaggagcagtagagatactttcaattatcggctatgaaaagccaactg
>TU1730332
gtccagtcgagcctcactagccagatgaagctagttGGCTGCTTATAACGGAAACTTtcggcaacagggggctgagtcactggcttactggtgctcttccatgccatccttAGGAGGGGTGCATTACTTGAGTGTGTTGAGTCGCTgatgtggtcttcctgtctgggttggcgtccccccttgggttgtgccgtggcggagatctttgtgagctatactcgaccttgtctcaggatggacctgagccctaggaccatgcctcggaaatacctggcatgatgacttcttgctgtccccagtccacctggccgtgctgctgctccagtttagtTTCAACTGTTCAACTGCCTGCGGTTCaactgcggctatggaaccctgacctgttcaccggacatgctaccttcccagacctgctgttttcaactctctagagacaacaggagcagtagagatactttcaattatcggctatgaaaagccaactgacatttagtcctgaggtgctgacttgttgcaccctcgacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttccttggtaatggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgagtttctgtacagtactttgatatattagctgatgtaaggagggctatataaatacatttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037316.1 False 504 mRNA 0.53 3 5591627 5593344
TU1730332 True 813 lncRNA 0.49 3 5591646 5593672

Neighbor

gene id symbol gene type direction distance location
LOC118941022 NA coding upstream 15148 5573391 ~ 5576479 (+)
LOC118941027 NA coding upstream 316427 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 548035 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 607492 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 700642 4880668 ~ 4933600 (+)
LOC110519537 LOC106592870 coding downstream 111407 5704751 ~ 5708466 (+)
LOC110512403 gas6 coding downstream 330159 5923503 ~ 5949854 (+)
LOC118941026 NA coding downstream 353403 5946747 ~ 5947078 (+)
LOC118941029 NA coding downstream 354198 5947542 ~ 5948154 (+)
LOC110519329 atp4b coding downstream 408400 6001744 ~ 6007442 (+)
G1512300 NA non-coding upstream 11580 5568478 ~ 5580047 (+)
G1512295 NA non-coding upstream 29654 5560879 ~ 5561973 (+)
LOC110495587 LOC106592870 non-coding upstream 46102 5526363 ~ 5637190 (+)
G1512284 NA non-coding upstream 46761 5539148 ~ 5544866 (+)
G1512275 NA non-coding upstream 80465 5510885 ~ 5511162 (+)
G1511955 LOC106574716 non-coding downstream 52480 5645824 ~ 5651171 (+)
G1511977 NA non-coding downstream 254485 5847829 ~ 5862162 (+)
G1512406 NA non-coding downstream 299263 5892607 ~ 5892871 (+)
G1512407 NA non-coding downstream 299641 5892985 ~ 5893193 (+)
G1512205 NA other upstream 348200 5242734 ~ 5243427 (+)
G1512182 NA other upstream 485539 5104087 ~ 5106088 (+)
G1512113 NA other upstream 723619 4865995 ~ 4868008 (+)
G1512020 NA other upstream 973675 4610018 ~ 4617952 (+)
G1512309 NA other downstream 14564 5607908 ~ 5613036 (+)
LOC110513970 LOC106575958 other downstream 70624 5461902 ~ 5702970 (+)
LOC110518779 dis3 other downstream 584496 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 805419 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 847508 6404433 ~ 6459931 (+)

Expression


Co-expression Network