LOC110519537 (LOC106592870)


Basic Information

Item Value
gene id LOC110519537
gene name LOC106592870
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5704751 ~ 5708466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037314.1
tgtgctagctgggatgggacaacattccacaggccacaatcaactctatgcaaaataGATGTGTCCCGGAGGAGGCAGCGACCCCTTCTCATGTGATGGGGTTGGGtcatcccaaggatcccggaaTGCACGGACGGTGTTAGTGGGGGAACAGGAAGTTCCGGACAAAAGCGCACCATTATTCAGTgtaaagaaagcgccagaacgGTGCAGTCAAGAAGATAACATTATTGTCCTTTTCTATTTATTACTACAGGCCGACTCAGATTGAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagacgagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtccAACAATGGAGCTGAATGTTgacattaaagatgaagaagaggaggagaagattgggGAATCTGTTAGTCATGtgaggacaaacccagcctgcctctctccttccacactgag
>XR_005037313.1
tgctagctgggatgggacaacattccacaggccacaatcaactctatgcaaaataGATGTGTCCCGGAGGAGGCAGCGACCCCTTCTCATGTGATGGGGTTGGGtcatcccaaggatcccggaaTGCACGGACGGTGTTAGTGGGGGAACAGGAAGTTCCGGACAAAAGCGCACCATTATTCAGTgtaaagaaagcgccagaacgGTGCAGTCAAGAAGATAACATTATTGTCCTTTTCTATTTATTACTACAGGCCGACTCAGATTGAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagacgagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtccAACAATGGAGCTGAATGTTgacattaaagatgaagaagaggaggagaagattgggGAATCTGTTAGTCATGGTATGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagt
>TU1729876
ATTCAGTgtaaagaaagcgccagaacgGTGCAGTCAAGAAGATAACATTATTGTCCTTTTCTATTTATTACTACAGGCCGACTCAGATTGAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagacgagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtccAACAATGGAGCTGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037314.1 False 545 mRNA 0.50 3 5704751 5708465
XR_005037313.1 False 568 mRNA 0.50 3 5704753 5708466
TU1729876 True 268 lncRNA 0.49 2 5704931 5706142

Neighbor

gene id symbol gene type direction distance location
LOC110513970 LOC106575958 coding upstream 1781 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding upstream 67561 5526363 ~ 5637190 (+)
LOC118941025 NA coding upstream 111407 5591627 ~ 5593672 (+)
LOC118941022 NA coding upstream 128272 5573391 ~ 5576479 (+)
LOC118941027 NA coding upstream 429551 5267808 ~ 5275200 (+)
LOC110512403 gas6 coding downstream 215037 5923503 ~ 5949854 (+)
LOC118941026 NA coding downstream 238281 5946747 ~ 5947078 (+)
LOC118941029 NA coding downstream 239076 5947542 ~ 5948154 (+)
LOC110519329 atp4b coding downstream 293278 6001744 ~ 6007442 (+)
LOC118941024 dcun1d2 coding downstream 340936 5998183 ~ 6065189 (+)
G1511955 LOC106574716 non-coding upstream 53580 5645824 ~ 5651171 (+)
G1512276 LOC106592870 non-coding upstream 110035 5521390 ~ 5594716 (+)
G1512300 NA non-coding upstream 124704 5568478 ~ 5580047 (+)
G1512295 NA non-coding upstream 142778 5560879 ~ 5561973 (+)
G1511977 NA non-coding downstream 139363 5847829 ~ 5862162 (+)
G1512406 NA non-coding downstream 184141 5892607 ~ 5892871 (+)
G1512407 NA non-coding downstream 184519 5892985 ~ 5893193 (+)
G1512410 NA non-coding downstream 187018 5895484 ~ 5896813 (+)
G1511942 NA non-coding downstream 189269 5897735 ~ 5898009 (+)
G1512309 NA other upstream 91715 5607908 ~ 5613036 (+)
G1512205 NA other upstream 461324 5242734 ~ 5243427 (+)
G1512182 NA other upstream 598663 5104087 ~ 5106088 (+)
LOC110495595 LOC106574881 other upstream 678421 4895914 ~ 5043592 (+)
LOC110518779 dis3 other downstream 469374 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 690297 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 732386 6404433 ~ 6459931 (+)
LOC110514219 LOC106594890 other downstream 842179 6493403 ~ 6573608 (+)
LOC110516612 LOC106574917 other downstream 1000193 6705632 ~ 6710286 (+)

Expression


Co-expression Network