LOC118941020 (LOC106595074)


Basic Information

Item Value
gene id LOC118941020
gene name LOC106595074
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5956579 ~ 5961996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951229.1
CCCCCCAGATGTCCCCCAGTCCCGCCCCACCCCCCCACATCATGTATAACCCCACCCAGCACGTGGTGACCTACGCTGGCTTCTGCCCCAACGGACAGGCCCTGCCCGCCTACCCCAACTACCCCGCTTTGCCCATGCAGcaCCACAGCAGTTACCAggccccctccaccccccagccCGGCCTGGAGATGACCCTAACCCCCTCCTCTCCGTCAGAGGAGAGCCAGAGCCAGCCTTCCGCCCAGGCCCCCAGCCAGCCCACCTTCCAGACTGGCTCCCAGGACCCTGGTCAGGGTTACATGCTATCACCCAACGCCCCTGCCCTCTACCCTGGCCCCGTCTACGGGCCCTCCGGCTTCGAGAAGCCCCCTCCTTATGCATGCTGAATGCCAACCTGACCTTTAGCCTTTGACCTTTAGGCCAGGGTAAGAGAGGCTAATGTCCAGAAACAACACCTAGCCTCTGTCACCTGGTCAGCACAGACATGAAGGAATCAGCTCGGTGTGACAGCGTCCATATATCCTTTCAATCAATCAGATATGGCCTCCACATAACAAATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATacccatccaatcaatcagatatGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCATTGCTTCTTACCCAGCTATCAGATTCATCCAGAACTCCACACAACAACGAGGTAAGAACTAGAAAGGACTAGAAGTCTAGGGACTAAGAGATTATGGGCAAGGAGACAAGGGGCTAGGAGACAAGGGGCTAGGGTGTGTTTTTGGACCAAGCCAGAGAATGTAGCAGAAGACACCTCACAGACAGATAAGCCATGACAGAGAGAAGACCTCTGGACTTTAATAATCATCTATTAATGTAgtgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttagaccccaactaccccaaactaccccactctgcccctgtagg
>XM_036951230.1
CCCCCCAGATGTCCCCCAGTCCCGCCCCACCCCCCCACATCATGTATAACCCCACCCAGCACGTGGTGACCTACGCTGGCTTCTGCCCCAACGGACAGGCCCTGCCCGCCTACCCCAACTACCCCGCTTTGCCCATGCAGcaCCACAGCAGTTACCAggccccctccaccccccagccCGGCCTGGAGATGACCCTAACCCCCTCCTCTCCGTCAGAGGAGAGCCAGAGCCAGCCTTCCGCCCAGGCCCCCAGCCAGCCCACCTTCCAGACTGGCTCCCAGGACCCTGGTCAGGGTTACATGCTATCACCCAACGCCCCTGCCCTCTACCCTGGCCCCGTCTACGGGCCCTCCGGCTTCGAGAAGCCCCCTCCTTATGCATGCTGAATGCCAACCTGACCTTTAGCCTTTGACCTTTAGGCCAGGGTAAGAGAGGCTAATGTCCAGAAACAACACCTAGCCTCTGTCACCTGGTCAGCACAGACATGAAGGAATCAGCTCGGTGTGACAGCGTCCATATATCCTTTCAATCAATCAGATATGGCCTCCACATAACAAATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATacccatccaatcaatcagatatGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCATCCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCATTGCTTCTTACCCAGCTATCAGATTCATCCAGAACTCCACACAACAACGAGGTAAGAACTAGAAAGGACTAGAAGTCTAGGGACTAAGAGATTATGGGCAAGGAGACAAGGGGCTAGGAGACAAGGGGCTAGGGTGTGTTTTTGGACCAAGCCAGAGAATGTAGCAGAAGACACCTCACAGACAGATAAGCCATGACAGAGAGAAGACCTCTGGACTTTAATAATCATCTATTAATGTAgtgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttagaccccaactaccccaaactaccccactctgcccctgtagg
>TU1731210
CTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCATTGCTTCTTACCCAGCTATCAGATTCATCCAGAACTCCACACAACAACGAGGTAAGAACTAGAAAGGACTAGAAGTCTAGGGACTAAGAGATTATGGGCAAGGAGACAAGGGGCTAGGAGACAAGGGGCTAGGGTGTGTTTTTGGACCAAGCCAGAGAATGTAGCAGAAGACACCTCACAGACAGATAAGCCATGACAGAGAGAAGACCTCTGGACTTTAATAATCATCTATTAATGTAgtgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttagaccccaactaccccaaactaccccactctgcccctgtaggttag
>TU1731211
CCCATCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCATCCAATCAGATATGGCCTCCATATACCCTTCCAATCAATCAGATATGGCCTCCATTTACCCTTCCAATCAGATATGGCC
>TU1731213
ccagccCGGCCTGGAGATGACCCTAACCCCCTCCTCTCCGTCAGAGGAGAGCCAGAGCCAGCCTTCCGCCCAGGCCCCCAGCCAGCCCACCTTCCAGACTGGCTCCCAGGACCCTGGTCAGGGTTACATGCTATCACCCAACGCCCCTGCCCTCTACCCTGGCCCCGTCTACGGGCCCTCCGGCTTCGAGAAGCCCCCTCCTTATGCATGCTGAATGCCAACCTGACCTTTAGCCTTTGACCTTTAGGCCAGGGTAAGAGAGGCTAATGTCCAGAAACAACACCTAGCCTCTGTCACCTGGTCAGCACAGACATGAAGGAATCAGCTCG

Function

NR:

description
PREDICTED: transmembrane protein 255B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951229.1 False 2621 mRNA 0.48 2 5956671 5961996
XM_036951230.1 False 2621 mRNA 0.48 2 5956671 5961996
TU1731210 False 585 lncRNA 0.48 1 5956579 5957163
TU1731211 False 269 lncRNA 0.44 2 5957236 5957930
TU1731213 True 329 TUCP 0.61 1 5958791 5959119

Neighbor

gene id symbol gene type direction distance location
LOC110495369 lims1 coding downstream 43290 5898100 ~ 5913381 (-)
LOC110527262 LOC106592870 coding downstream 65889 5877427 ~ 5890782 (-)
LOC110515909 LOC106592258 coding downstream 86451 5493050 ~ 5870220 (-)
LOC110510709 LOC106575793 coding downstream 180346 5741013 ~ 5776325 (-)
LOC110519533 LOC106575981 coding downstream 259604 5677696 ~ 5697067 (-)
LOC110514102 grk1 coding upstream 26473 5988469 ~ 6000731 (-)
LOC110495371 LOC106574843 coding upstream 44461 6006457 ~ 6020888 (-)
LOC118936560 tmco3 coding upstream 59013 6021009 ~ 6051150 (-)
LOC110513718 lamp1 coding upstream 134881 6096877 ~ 6114832 (-)
LOC110527162 LOC106575909 coding upstream 157021 6119017 ~ 6145394 (-)
G1513047 NA non-coding downstream 23128 5932794 ~ 5933543 (-)
G1512593 NA non-coding downstream 58656 5897732 ~ 5898015 (-)
G1513036 NA non-coding downstream 61608 5894514 ~ 5895063 (-)
G1513035 NA non-coding downstream 62886 5893286 ~ 5893785 (-)
G1513064 NA non-coding upstream 15340 5977336 ~ 5978877 (-)
G1512558 NA non-coding upstream 23283 5985279 ~ 5987523 (-)
G1513093 NA non-coding upstream 64927 6026923 ~ 6027755 (-)
G1513102 NA non-coding upstream 124264 6086260 ~ 6086534 (-)
G1513111 NA non-coding upstream 154922 6116918 ~ 6117229 (-)
LOC118941221 NA other downstream 237816 5408991 ~ 5718855 (-)
G1512560 LOC106574716 other downstream 644087 5281447 ~ 5321420 (-)
G1512635 NA other downstream 1114877 4835070 ~ 4841794 (-)
LOC110518947 LOC106574830 other upstream 252913 6214712 ~ 6309934 (-)
G1513053 NA non-coding upstream 2976 5960906 ~ 5961132 (-)
LOC118941020 LOC106595074 other upstream 861 5956579 ~ 5961996 (-)

Expression


Co-expression Network