LOC110519329 (atp4b)


Basic Information

Item Value
gene id LOC110519329
gene name atp4b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6001744 ~ 6007442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951284.1
CACATAGTGTAGGtcacaccacagagagagagaggtcagctgTACAGTAGTAGAACTAGGAACACAACAGTAGTATTGTATTAGAATACAGGCTGAGAGAAACAGGCACAGAAACATCCCAAAAAAAGCAAAGGAACCACTGAGAGACGGAGGAAATTTAAAAAAGTCCTACAGTAGGTTTCTCTCAGACACCATAACCAGGTGAGGAGTGAAGCCGGGTTGCCAGATTGTGACGAGGTATCCCTGTTCCCTGCACAGCATCTCTCCACATCTCCCACTGGTCTCTCCTGGTGTAGCTGGATCCTATAGCCCACCAACATGGCAAccctgaaggagaagaggacgtGTGGCCAGCGGTGTGAGGACTTCGGTCGCTTCGTGTGGAACTCAGACACTGGCGCCATGTTCGGAAGAACACCTGAGAAATGGGTGTACATCAGTCTGTACTATGTAGCGTTCTATGTGATAATGACTGGCCTGTTCTGTCTGGCCATCTGGACTCTGATGTACACCCTGGACCCCTACACTCCAGACTACCAGGACCGCTTAACATCACCAGgggtgatGGTCTGGCCACCTACATACATTGAGGAGGATGTAATACTCAGCTACAACTTGTCTGATAAAACCAGCCAGAGGAAGATGTCCAACTGCCTCAGCAACTTCCTCAAACCCTACAACGACACGTCTCAACAGTCTAACCATAACTGCACCAAGGGAGAGTACTTCAAACAGGAGAAGTTTGAGGCTCCACACCATACCAAGTACTCCTGCCGCTTCACCCAGAGCATGCTGGGACGCTGCTCCGGCCTGGACGACCCGACGTTCGGCTACAACGGCACCACGCCCTGCGTCATCATCAAGATGAACAGGATCATCAACTTCCTGCCCAACAACGGGACAGGCATGGCTCCTCATTTGAACTGCACTATACTGagTGGCCATGAGAACATAGACATGATCGAGTACTTCCCCACCAACGGAACCTTCGACCTGTCCTACTTCCCATACTACGGCAAACTGGCTCAGCCCACCTACGTTAACCCTCTAGTGGCTGTGAAGTTCCACCTGGTCAAAGAGAGGGAGGCTAAGATCCAGTGTCGTGTGGTGGCCCACAACATCGCCTATCAAGACTCATACGAACCATACCAGGGGAAGGTGGTCTTCCTGCTCAAGGCTCTGAAATAATATATTTTACTGGACAAGCCAGCAATCCAACCATCTAGGTCCTAACCATGGTCAGAGCCATAGAGCTGGATAGTGTTCCTCATCTTTGCAATTATGACAGAATGGGAAGTGCAGTTGAGGGctttctccattttaaagtagtctgTGGGAAGATATCTTCACAATTTCGTCAACAGGTATGTCCTTAACCCATCGACGTTCCCACCCAGTTCTAGCCATCTATCCTCGTCTATGATCCCAACCAAGGCAATCTGGTAACCCATGAAAAAGGAGTCTCACACTAGCTCAACAACAACCTAATAACCAGTGGTTGGACAGACCAGCCGTCTTCTTCAGGGTGTGATGGTAATTCAGTTATTGCCTCCGAGGTCCTAGAGGGTGTGGCTCTCCCCTTTCTTCTTCCTAGTGTCCTACTCTGCCAGCACCTCACCTGAACAGATGTGTTTTTCACCTCCAGATTTCACCTGGAAATTCAACCATCTCTGTCCAGACAGTGGTCGTTCTGCTTCATTTGACCTCACTCTTTTATATAGCTTCTAGGAAGAGCATTTAACATAGAGTTAATGGAGTGCTGCTTGTACAACCAATACGTTACCTATGCATTGTATCATAATGAAACCATAAATATTAAACATGTATTCAAATCCATAAAGACAACAAGTTCAAACACCCTCTA

Function

symbol description
atp4b Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Implicated in atrophic gastritis; autoimmune gastritis; and stomach cancer.

NR:

description
potassium-transporting ATPase subunit beta-like

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01543 ATP4B; H+/K+-exchanging ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951284.1 True 1864 mRNA 0.48 7 6001744 6007442

Neighbor

gene id symbol gene type direction distance location
LOC110512403 gas6 coding upstream 51890 5923503 ~ 5949854 (+)
LOC118941029 NA coding upstream 53590 5947542 ~ 5948154 (+)
LOC118941026 NA coding upstream 54666 5946747 ~ 5947078 (+)
LOC110519537 LOC106592870 coding upstream 293278 5704751 ~ 5708466 (+)
LOC110495587 LOC106592870 coding upstream 364554 5526363 ~ 5637190 (+)
LOC118941024 dcun1d2 coding downstream 41960 5998183 ~ 6065189 (+)
LOC110511044 adprhl1 coding downstream 63332 6070774 ~ 6082183 (+)
LOC110527156 LOC106575911 coding downstream 74851 6082293 ~ 6096601 (+)
LOC118941019 tgfbrap1 coding downstream 139224 6146666 ~ 6157976 (+)
LOC110518779 dis3 coding downstream 165381 6172823 ~ 6188926 (+)
G1512457 NA non-coding upstream 3427 5987335 ~ 5998317 (+)
G1512460 NA non-coding upstream 4471 5995922 ~ 5997273 (+)
G1512459 grk1 non-coding upstream 8936 5988449 ~ 5992808 (+)
G1512454 NA non-coding upstream 23205 5977329 ~ 5978539 (+)
G1512453 NA non-coding upstream 32520 5968125 ~ 5969224 (+)
G1512432 NA non-coding downstream 98 6007540 ~ 6009060 (+)
G1512463 LOC106575884 non-coding downstream 1967 6009409 ~ 6014360 (+)
G1512468 NA non-coding downstream 18214 6025656 ~ 6026387 (+)
G1512478 NA non-coding downstream 78295 6085737 ~ 6086021 (+)
G1512479 NA non-coding downstream 79438 6086880 ~ 6087832 (+)
LOC110513970 LOC106575958 other upstream 330411 5461902 ~ 5702970 (+)
G1512309 NA other upstream 388708 5607908 ~ 5613036 (+)
G1512205 NA other upstream 758317 5242734 ~ 5243427 (+)
G1512182 NA other upstream 895656 5104087 ~ 5106088 (+)
LOC110495595 LOC106574881 other upstream 975414 4895914 ~ 5043592 (+)
LOC110495361 LOC106575795 other downstream 391321 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 433410 6404433 ~ 6459931 (+)
LOC110514219 LOC106594890 other downstream 543203 6493403 ~ 6573608 (+)
LOC110516612 LOC106574917 other downstream 701217 6705632 ~ 6710286 (+)

Expression


Co-expression Network