LOC110527156 (LOC106575911)


Basic Information

Item Value
gene id LOC110527156
gene name LOC106575911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6082293 ~ 6096601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951291.1
GAATCTTTGTTCAAATGTTGACCCCCAGAGGGTTCATttttttctggaatgttccaaggtGACAGATACACCCACACAGGTTGTTTGTGTGACAGCTAGATGTTCTACGACCACAGCACGGTAAATGTGCCCTCACTGCCAGTGTTTTGGCTACAGACATGGACTATAACCTGGGGAAATAACCCACTTATCTCATACTATTCACACCAGTCGCCTTTCACTGACGGTTGGAAAAACAGCCCTAAACACACTATTTTTATGCTAAGAAATGGACGATGTGCACTTGTAGGGTTATgctcaaacacacaaagacatacATTCGTTTCTGGAAGGAAAAAAAACTGTATGAGGATATGTCCTTAGAGTAATACTCATTTGAAGATGTAGCTACTTCAAATATTAATTTAAGAAATTTAacagtgatttttttttacaatgattTGTGTCATGGTATGTGTGATGCATGACGTCATCTACTGTAAAAATCACCTGCCAGGGGGAGTGGCTAAAGGTAAGCGTCAGAAGGGTTTCCCTATTCCGTTATCATGACGTGGCATTGTGGACATTTTGTAAACCAAGTATATTACGAagtaaaatgtaataaaatgagaTGTGATTATATATAATCGAATAGGTTTGTTATTTCATCGCTGATCGTTTTTGCGTACCTAGAATATTTATGAGGGGGCGGTTCTATTTCCCGCTCATGCTTGATTGACATGTGCCCCGAGGCTAAGCGGAGCTCGGGCACAGTCAGGCGTTCTACCTTGGAAAACATGGAAAGAAACCACCCGGCAGATTCATAGacatttcaatatatttattaatTATGGACCATGTTTCGAGACGCTGTGGAGTCAGCCGATCGCGTTTAACATAGTTGTTGCCAGATTGCGGTTGCTCTCCAGTTTCACCCACCAAAGTAAAAATCCAGGTGCATAAACGGGTTTCTCTCTTCCAGATAGGATGAAAGATCGAGACACTACTCTCCTCTTCCAGCTAAATTAGCTTGTGCCTCGGGTGGGTCAATACAACTCTCCGTTGTTTGACTGTCTGGGACATCGAGTGACTCTTCGACTGTCCCTGATCGGCATCCGAGTCCACGCCTGGGACTTGCAGTTGTGGGACTCGCTTCATGGAGAGAGCAGCGATACCGTTTCAACTTTTGGACTACGGAATAGCCTTCTGCGATTAACTAAGCGTTTAGGCCATATTTCCACGGCATATTTTGGAATATATTTGGGTTCACTCATGGAAAAGAAAAACAACAAAGCGAACAGGGTTCGCTCGCCGCAACTTCACAGCCTGAACTCGACTATCAACTCTCCTCCCAGCGGCAGCAGCGCCAAAGAGAGAGTGCACAGTGTGGACCCCTATGGCTTTGAGCGGTTGGAGGACTTTGACTATGAGTCGTATGAGGAGTTGATGTCAGAGTACCTGGCCGTGCTCACCAGGAGGTCCATCAGATGGTCCAGGCTGTTGCAGGGACGGGGACGGCTGGAGAAGAGCATCAAGGTGAAGCGGTATGTGCGCAAGGGCGTGCCCAACGAGCACCGAGGGTTGGTCTGGATGTCAGCCAGCGGGGCCCAGGAGCACCTGGAGAAGAACCCAGGCTACTATCACTCTCTACTGGACACTACGAAGCAACAGCACGACCCCAAGCTGGTAGACTCCATACGCACAGACCTAAACAGAACCTTTCCTGACAACGTCCAGTTCCGCAAGACGTCGAACCCATGTCTCCAGAAAACCCTGTACAACGTGCTGCTAGCGTACGGACACCACAACCCAGCTGTGGGCTACTGTCAAGGCATGAACTTCATCGCTGGGTacctcatcatcatcactaaAGACGAGGAGAAATCATTCTGGCTGATGGACGCTCTACTGGGCAGGATACTACCAGACTACTACACCCCGGCCATGCTGGGTCTGAAGATGGACCAGGAGGTTTTAGGGGAGCTTGTGAGGACCAAAGCCCCAGTTGTGTGGCAGGCCATGGGGCAACACAACGTCATGTGGACCCTGGTGGTCTCCAGGTGGTTCATCTGTCTCTACATAGACGTCCTGCCTgtagagACGGTTCTGCGTATCTGGGACTGTCTGTTCTACGAGGGTTCTAAGATTCTGTTCCGTGTGGCTCTGACGTTGATAAGGAACCAGCAGGCTGAGGTCCAACAGGCCGGTTCCCTGCCTGACGTCTGTGACGGCTTCAAACACATGACCAGAGGCCCTGATGTAGAGGACTGCCACACCTTcatgcagAAAATCTTCACGGAACCCGGAAGCCTCTCCATGGCAACCATCACCAAGCTCCGGGAGACGTGTCGAGCACGCATCATCGCTGAGGAGTCCTGACCCCATCCTCGTGACCTGTCAATCAAACACACTACACATTCCGGGCTGGGTCCCAACACTCCTTAATGGTCTCCTCTCCTCGGATCCTATCCCTCACTGTTGGGACAGTGTCCTAGACTGTTTTGTACTCTTTAGCATGACTACCATGTAGCTATGTAGACTACCATGTATGGAGACTACTAGGGGTGAAAATAAGGTGTAACGTGTACCAGCAAATGTAATTAGTAACTATCCTGTGGGGGCACATCGCACCGGTTAAACATGAGCCTGTCACAATAATGAACAACAAAGATGCCAATCAAACCTATTGTCTATTACACTATTGTCATTACTGTATGAAAGTcacatgaaataaaacatatttagccAATGGACATGAAAACATATGCTCAAATGCGGTGTGGTTTGGCAATAAGTGACATTTTGAAAAAGCAGAGATGATCGTCTGAGACGCGCGGACAGCAGTGGACGTTACCAGACTGATATCGTCTTAATGACGCGCGGACAGCAGAGGACGTTACCAGACTGATATCGTCTTAATGACGCGCGGACAGCAGTGGACGTTACCAGACTGATATCGTCTTAATGAGTGACGTCGCTGATCGGCTGAGACGCGCGGACAGCAGTGGACGTTACCAGACTGATATCGTCTTAATGAGTGACGTCGCTGATCGGCTGAGACGCGCGGACAGCAGTGGACGTTACCAGACTGATATCGTCTTAATGACGCGCGGACAGCAGTGGACGTTACCAGACTGATATCGTCTTAATGACGCGCGGACAGCAGAGGACGTTACCAGACTGATATCGTCTTAATGACGCGCGGACAGCAGAGGACGTTACCAGACTGATATCGTCTTAATGAGGGACGTCGCTGGGTGTCATTCATCAAACGGCGGCTGCACTGTAGAGATGCAGGAATTCAACATGAGTTTTAGTCCAGCGTTGGTGTTCATCTGCATTGGGGGAAACCAGCCCTGGAACTATTGGTTCATGTAGACCTGAATGTACACATGTAGCTAGATAGTTCATGTAGACCTGAATGTACACATGTAGCTAGATAGTTCATGTAGACCTGAATGTAGTTAGATAGATGGAGTGTAATGTTAACTCACACCCTGCTAACTGAGGATTCCATgtgtcccccaaatggcaccctattccctacaaaagtagtgcactatatagggaatagggctctggtctaaaatagtgcagtatatagggaatagggccctggtctaaaatagtgcagtatatagggaatagccctggtctaaaatagtgcagggaatagggtgccaattgagaTGTAACTCATGTGAGATTCATGTTGCTGACTGAAGCTCATCGTAACTggaataaacatttatttaagaACAAGA

Function

NR:

description
growth hormone-regulated TBC protein 1-A-like

GO: NA

KEGG:

id description
K19953 GRTP1, TBC1D6, MSB3_4; TBC1 domain family member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951291.1 True 3743 mRNA 0.48 8 6082293 6096601

Neighbor

gene id symbol gene type direction distance location
LOC110511044 adprhl1 coding upstream 110 6070774 ~ 6082183 (+)
LOC118941024 dcun1d2 coding upstream 17104 5998183 ~ 6065189 (+)
LOC110519329 atp4b coding upstream 74851 6001744 ~ 6007442 (+)
LOC110512403 gas6 coding upstream 132439 5923503 ~ 5949854 (+)
LOC118941019 tgfbrap1 coding downstream 50065 6146666 ~ 6157976 (+)
LOC110518779 dis3 coding downstream 76222 6172823 ~ 6188926 (+)
mzt1 NA coding downstream 104784 6201385 ~ 6203248 (+)
ubac2 LOC106591293 coding downstream 222300 6318901 ~ 6351781 (+)
LOC110512784 LOC106574826 coding downstream 255315 6351916 ~ 6384414 (+)
G1512468 NA non-coding upstream 55906 6025656 ~ 6026387 (+)
G1512463 LOC106575884 non-coding upstream 67933 6009409 ~ 6014360 (+)
G1512432 NA non-coding upstream 73233 6007540 ~ 6009060 (+)
G1512457 NA non-coding upstream 83976 5987335 ~ 5998317 (+)
G1512419 lamp1 non-coding downstream 279 6096880 ~ 6114769 (+)
G1512484 NA non-coding downstream 16300 6112901 ~ 6113546 (+)
G1512486 NA non-coding downstream 19173 6115774 ~ 6116068 (+)
G1512488 NA non-coding downstream 20316 6116917 ~ 6117222 (+)
G1512426 NA non-coding downstream 25027 6121628 ~ 6122179 (+)
LOC110513970 LOC106575958 other upstream 410960 5461902 ~ 5702970 (+)
G1512309 NA other upstream 469257 5607908 ~ 5613036 (+)
G1512205 NA other upstream 838866 5242734 ~ 5243427 (+)
G1512182 NA other upstream 976205 5104087 ~ 5106088 (+)
LOC110495595 LOC106574881 other upstream 1055963 4895914 ~ 5043592 (+)
LOC110495361 LOC106575795 other downstream 302162 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 344251 6404433 ~ 6459931 (+)
LOC110514219 LOC106594890 other downstream 454044 6493403 ~ 6573608 (+)
LOC110516612 LOC106574917 other downstream 612058 6705632 ~ 6710286 (+)

Expression


Co-expression Network