LOC110496964 (LOC106594657)


Basic Information

Item Value
gene id LOC110496964
gene name LOC106594657
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6404433 ~ 6459931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951488.1
TACTTCTACGTCCGGTTACTCGATTTGATTGGAAGACGGAGCACACTCCCCTGTCATACGTCACTACTGCGCTCCCCTCAACCCGGACAGACATGGCGGCGTACATGATCACTTCAACCCTGCGAAGAGTTTTGCTTGTTGCTAAGCATGCCTCTTTCCAGTCCAGATGCTGTGTGGCGTCCAGTCGAGTCCAGTACTCCACTGTTTATGATTCCAATGAGAAGACCTTTGATAAGATccttattgcaaacagaggaGAGATCGCCTGCAGGGTGATGAAAACATGTAAGAAGATGGGTATCAAAACAGTGGCGGTGCACAGTGATGTCGACGCCAGCGCGGTCCATGTGAAGATGGCTGACGAGGCAGTGTGTGTAGGCCCCGCCCCCACCAACAAGAGCTACCTCAACATGGACGCCATCATGGACGCTATCAGGAAGACTGGATCCCAGGCCGTGCATCCAGGCTACGGTTTTCTGTCTGAAAATAAAGAGTTTGCCAAGAGACTGGCAGCAGAAGACGTGGTGTTCATAGGACCGGACACCCACGCCATCCATGCCATGGGCGACAAGATCGAGAGCAAGCTCCTAGCCAAGGCAGCCAATGTCAACGTCATCCCTGGGTTCGACGGGGTCGTCGAGaaCGTGGAGGACGCTGTGAAGATTGCAGGAGACATCGGCTACCCGGTGATGATCAAGGCCTCAGCAGGAGGAGGGGGAAAAGGCATGAGGATCGCCTGGAACGATGATGAGACCAGGGAAGGTTTTCGTTTGTCCTCACAGGAGGCTGCGTCTAGTTTCGGAGACGACCGTCTGCTGATAGAGAAGTTTGTAGACAACCCCAGACACATTGAGATCCAGGTCCTGGCTGATAAGCATGGTAATGCTCTGTGGCTGAACGAGAGGGAGTGTTCTATCCAGAGGAGGAACCAGAAGGTGGTGGAGGAGGCTCCAAGTACGTTCCTGGACCCAGAGACGCGTCGTGCGATGGGGGAGCAAGCGGTACAGCTGGCTAAAGCAGTCCACTACTCCTCTGCCGGGACCGTAGAGTTCTTGGTGGACTCCAACAAGAACTTCTACTTCCTGGAGATGAACACTCGCCTTCAGGTGGAGCACCCAATCACAGAGTGCATCACTGGTCTGGACCTGGTGCAGCAGATGATCCGTGTGGCCAAGGGTTTCCCTCTGCTACACAAACAGGAAGACATCCCCATCAACGGCTGGGCTATAGAGAGCCGAGTCTACGCTGAGGACCCCTACAAGTCCTTTGGCCTGCCCTCCATTGGACGCCTGTCACAGTACCAGGAACCCATCAACCTCCCAAagGTGCGTGTGGACAGTGGCATCCAAGAAGGAAGTGACATCAGTATCTACTATGACCCAATGATCTCCAAGCTGGTGACCTATGGCGCCACGCGCGCTGAAGCCCTGCAGAGGATGGAGGCGGCTCTCGATAACTATGTCATCAGAGGTGTGACCCACAACATCCCCCTGCTCAGAGAGATCATCACCCACCCTCGCTTCATCTCTGGTGACATCACCACTAACTTCCTGCCAGAGGAATACCCAGAGGGGTTCAAAGGTCACCAGCTGACCTCCGAGGGTCGCAGGGAGCTCGTCTCCACCGCAGCCGCTCTCTACGTCTCCGCACAGCTCCGCTCCCAGAGGTTCCTGGGTAATCTCAGggtgtcCACCACCCCCCAGGAGCAGAGGCAGTGGGAGCTGTGTGTGGAGTTGGAGAAGGGAAGCCACACGGTCGCTGTGTCACGCTCTGGATCCACGTTCACTGTGGAGGTGGATGGAGTTACGGTGGAGGTTAGTGGAGAGTGGAACCTGGCCTCAGCCCTGCTGCCTGTCACCATCAACAGAACCCCCAGGGTTCTACAGTGTCTGTCTAGAGACGCAGGAGGAGACATCACTCTACAGTACCTGGGCACACAGTTTAAGGTGCGTGTTCTCAGTCAGCTGGTATCCACGCTGAGCGCTCACATGCCTGAGAAGGTTCCAGAAGACACCAGCAGCATCCTGCGTTCTCCGATGCCTGGCTCCGTGGTCGCCGTGTCTGTCAAACCTGGAGACGTGGTGGCTGAAGGCCAGGAGATCTGTGTGATCGAGGCCATGAAGATGCAGAACAGCTTGATTGCTGCTAAAGCTGCCAAGGTGAAGAGTGTCCACTGTAAAGCAGGAGAGACGGTTGGAGAGGGAGACCTTCTGGTCCAACTGGAGTAGGATCTAACCTACGACCTCTAACCTCTGCCCTCCCACCTCTGACCTCGCTCGCCAGGGATTGGCTTCGAAGTCCGGTTGAAGGAATTCTGGGACAAAGGAATGAACAGGATACTAGTAGACTAGATGGACCGTTCCCCAGTCTCTCCTTGTTGTTTTGTTCTGATGTAGGCTACACTCTCCAGTATTGGCTTCTGGGATTCGCTCGTTCTAGGAATTTTCCTCTGAAAAAAACTGAAAAACAAGATGGACGCCGTGGACCTGTTTTAGTGCCTTCAGCCTCTGAAAAGAGGATTGTCCTGTTAAATATGATGAACACTGTATATATCACTTAGCTACATGTCACTAATCATGTGTAATGTTCTTCCTcaccagcctggtctcagatctgtttgtgccattTTGCCAGGacgtctgggaccaggctaggcgCCTCTCATTTCAACGTAAAGAAACACTTGTGTATCAGAGTTTAGAAACCTGGTTATAGTAAAACGCTACTCTCTTA
>XR_005037353.1
TACTTCTACGTCCGGTTACTCGATTTGATTGGAAGACGGAGCACACTCCCCTGTCATACGTCACTACTGCGCTCCCCTCAACCCGGACAGACATGGCGGCGTACATGATCACTTCAACCCTGCGAAGAGTTTTGCTTGTTGCTAAGCATGCCTCTTTCCAGTCCAGATGCTGTGTGGCGTCCAGTCGAGTCCAGTACTCCACTGTTTATGATTCCAATGAGAAGACCTTTGATAAGATccttattgcaaacagaggaGAGATCGCCTGCAGGGTGATGAAAACATGTAAGAAGATGGGTATCAAAACAGTGGCGGTGCACAGTGATGTCGACGCCAGCGCGGTCCATGTGAAGATGGCTGACGAGGCAGTGTGTGTAGGCCCCGCCCCCACCAACAAGAGCTACCTCAACATGGACGCCATCATGGACGCTATCAGGAAGACTGGATCCCAGGCCGTGCATCCAGGCTACGGTTTTCTGTCTGAAAATAAAGAGTTTGCCAAGAGACTGGCAGCAGAAGACGTGGTGTTCATAGGACCGGACACCCACGCCATCCATGCCATGGGCGACAAGATCGAGAGCAAGCTCCTAGCCAAGGCAGCCAATGTCAACGTCATCCCTGGGTTCGACGGGGTCGTCGAGaaCGTGGAGGACGCTGTGAAGATTGCAGGAGACATCGGCTACCCGGTGATGATCAAGGCCTCAGCAGGAGGAGGGGGAAAAGGCATGAGGATCGCCTGGAACGATGATGAGACCAGGGAAGGTTTTCGTTTGTCCTCACAGGAGGCTGCGTCTAGTTTCGGAGACGACCGTCTGCTGATAGAGAAGTTTGTAGACAACCCCAGACACATTGAGATCCAGGTCCTGGCTGATAAGCATGGTAATGCTCTGTGGCTGAACGAGAGGGAGTGTTCTATCCAGAGGAGGAACCAGAAGGTGGTGGAGGAGGCTCCAAGTACGTTCCTGGACCCAGAGACGCGTCGTGCGATGGGGGAGCAAGCGGTACAGCTGGCTAAAGCAGTCCACTACTCCTCTGCCGGGACCGTAGAGTTCTTGGTGGACTCCAACAAGAACTTCTACTTCCTGGAGATGAACACTCGCCTTCAGGTGGAGCACCCAATCACAGAGTGCATCACTGGTCTGGACCTGGTGCAGCAGATGATCCGTGTGGCCAAGGGTTTCCCTCTGCTACACAAACAGGAAGACATCCCCATCAACGGCTGGGCTATAGAGAGCCGAGTCTACGCTGAGGACCCCTACAAGTCCTTTGGCCTGCCCTCCATTGGACGCCTGTCACAGTACCAGGAACCCATCAACCTCCCAAagGTGCGTGTGGACAGTGGCATCCAAGAAGGAAGTGACATCAGTATCTACTATGACCCAATGATCTCCAAGCTGGTGACCTATGGCGCCACGCGCGCTGAAGCCCTGCAGAGGATGGAGGCGGCTCTCGATAACTATGTCATCAGAGGTGTGACCCACAACATCCCCCTGCTCAGAGAGATCATCACCCACCCTCGCTTCATCTCTGGTGACATCACCACTAACTTCCTGCCAGAGGAATACCCAGAGGGGTTCAAAGGTCACCAGCTGACCTCCGAGGGTCGCAGGGAGCTCGTCTCCACCGCAGCCGCTCTCTACGTCTCCGCACAGCTCCGCTCCCAGAGGTTCCTGGGTAATCTCAGggtgtcCACCACCCCCCAGGAGCAGAGGCAGTGGGAGCTGTGTGTGGAGTTGGAGAAGGGAAGCCACACGGTCGCTGTGTCACGCTCTGGATCCACGTTCACTGTGGAGGTGGATGGAGTTACGGTGGAGGTTAGTGGAGAGTGGAACCTGGCCTCAGCCCTGCTGCCTGTCACCATCAACAGAACCCCCAGGGTTCTACAGTGTCTGTCTAGAGACGCAGGAGGAGACATCACTCTACAGTACCTGGGCACACAGTTTAAGGTGCGTGTTCTCAGTCAGCTGGTATCCACGCTGAGCGCTCACATGCCTGAGAAGGTTCCAGAAGACACCAGCAGCATCCTGCGTTCTCCGATGCCTGGCTCCGTGGTCGCCGTGTCTGTCAAACCTGGAGACGTGGTGGCTGAAGGCCAGGAGATCTGTGTGATCGAGGCCATGAAGATGCAGAACAGCTTGATTGCTGCTAAAGCTGCCAAGGTGAAGAGTGTCCACTGTAAAGCAGGAGAGACGGTTGGAGAGGGAGACCTTCTGGTCCAACTGGAGTAGGATCTAACCTACGACCTCTAACCTCTGCCCTCCCACCTCTGACCTCGCTCGCCAGGGATTGGCTTCGAAGTCCGGTTGAAGGAATTCTGGGACAAAGGAATGAACAGGATACTAGTAGACTAGATGGACCGTTCCCCAGTCTCTCCTTGTTGTTTTGTTCTGATGTAGGCTACACTCTCCAGTATTGGCTTCTGGGATTCGCTCGTTCTAGGAATTTTCCTCTGAAAAAAACTGAAAAACAAGATGGACGCCGTGGACCTGTTTTAGTGCCTTCAGCCTCTGAAAAGAGGATTGTCCTGTTAAATATGATGAACACTGTATATATCACTTAGCTACATGTCACTAATCATGTGTAATGTTCTTCCTcaccagcctggcgCCTCTCATTTCAACGTAAAGAAACACTTGTGTATCAGAGTTTAGAAACCTGGTTATAGTAAAACGCTACTCTCTTAGGTGGAGTTACGTTTGTCTTTTTAAAGGATATGTCTCAACCCCAATTTCAGCCTTTGTCTAACCCCTTGACATTGTTAAGAAAAAAATGCATTCAGGTGAGAAGTTGTGGATGTGGGGGGGACTTGCTCATAA
>TU1731437
gtgtgactgtccagGGGTCTGATCTCTGTCtgttgttcctgtgtgtgtgactgtccagGTGTGACCCACAACATCCCCCTGCTCAGAGAGATCATCACCCACCCTCGCTTCATCTCTGGTGACATCACCACTAACTTCCTGCCAGAGGAATACCCAGAGGGGTTCAAAGGTCACCAGCTGACCTCCGAGGGTCGCAGGGAGCTCGTCTCCACCGCAGCCGCTCTCTACGTCTCCGCACAGCTCCGCTCCCAGAGGTTCCTGGGTAATCTCAGggtgtcCACCACCCCCCAGGAGCAGAGGCAGTGGGAGCTGTGTGTGGAGTTGGAGAAGGGAAGCCACACGGTCGCTGTGTCACGCTCTGGATCCACGTTCACTGTGGAGGTGGATGGAGTTACGGTGGAGGTTAGTGGAGAGTGGAACCTGGCCTCAGCCCTGCTGCCTGTCACCATCAACAGAACCCCCAGGGTTCTACAGTGTCTGTCTAGAGACGCAGGAGGAGACATCACTCTACAGTACCTGGGCACACAGTTTAAGGTGCGTGTTCTCAGTCAGCTGGTATCCACGCTGAGCGCTCACATGCCTGAGAAGGTTCCAGAAGACACCAGCAGCATCCTGCGTTCTCCGATGCCTGGCTCCGTGGTCGCCGTGTCTGTCAAACCTGGAGACGTGGTGGCTGAAGGCCAGGAGATCTGTGTGATCGAGGCCATGAAGATGCAGAACAGCTTGATTGCTGCTAAAGCTGCCAAGGTGAAGAGTGTCCACTGTAAAGCAGGAGAGACGGTTGGAGAGGGAGACCTTCTGGTCCAACTGGAGTAGGATCTAACCTACGACCTCTAACCTCTGCCCTCCCACCTCTGACCTCGCTCGCCAGGGATTGGCTTCGAAGTCCGGTTGAAGGAATTCTGGGACAAAGGAATGAACAGGATACTAGTAGACTAGATGGACCGTTCCCCAGTCTCTCCTTGTTGTTTTGTTCTGATGTAGGCTACACTCTCCAGTATTGGCTTCTGGGATTCGCTCGTTCTAGGAATTTTCCTCTGAAAAAAACTGAAAAACAAGATGGACGCCGTGGACCTGTTTTAGTGCCTTCAG

Function

NR:

description
propionyl-CoA carboxylase alpha chain, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951488.1 False 2733 mRNA 0.54 21 6404433 6459798
XR_005037353.1 False 2816 mRNA 0.53 22 6404433 6459931
TU1731437 True 1092 TUCP 0.55 6 6440852 6459569

Neighbor

gene id symbol gene type direction distance location
LOC110495361 LOC106575795 coding upstream 916 6398763 ~ 6403517 (+)
LOC110512784 LOC106574826 coding upstream 20019 6351916 ~ 6384414 (+)
ubac2 LOC106591293 coding upstream 52652 6318901 ~ 6351781 (+)
mzt1 NA coding upstream 201185 6201385 ~ 6203248 (+)
LOC110518779 dis3 coding upstream 215507 6172823 ~ 6188926 (+)
LOC118941080 NA coding downstream 30300 6490231 ~ 6491752 (+)
LOC110514219 LOC106594890 coding downstream 33472 6493403 ~ 6573608 (+)
LOC110516612 LOC106574917 coding downstream 245701 6705632 ~ 6710286 (+)
syap1 syap1 coding downstream 347348 6807279 ~ 6815407 (+)
LOC110495421 LOC106593174 coding downstream 355555 6815486 ~ 6837266 (+)
G1513183 NA non-coding upstream 10330 6393699 ~ 6394103 (+)
G1513181 NA non-coding upstream 14116 6390040 ~ 6390317 (+)
G1513174 NA non-coding upstream 26485 6377730 ~ 6377948 (+)
G1512536 NA non-coding upstream 58252 6345722 ~ 6346181 (+)
G1513200 NA non-coding downstream 2018 6461949 ~ 6462786 (+)
G1513197 NA non-coding downstream 4351 6464282 ~ 6464972 (+)
G1513218 NA non-coding downstream 6348 6466279 ~ 6466580 (+)
G1513201 NA non-coding downstream 7858 6467789 ~ 6468089 (+)
G1513199 NA non-coding downstream 8230 6468161 ~ 6468432 (+)
LOC110513970 LOC106575958 other upstream 733100 5461902 ~ 5702970 (+)
G1512309 NA other upstream 791397 5607908 ~ 5613036 (+)
G1512205 NA other upstream 1161006 5242734 ~ 5243427 (+)
G1513452 NA other downstream 566277 7026208 ~ 7026810 (+)
LOC110513752 LOC106575969 other downstream 572679 7032578 ~ 7102239 (+)
G1513874 NA other downstream 966652 7426583 ~ 7426971 (+)
G1513211 NA non-coding upstream 14009 6425551 ~ 6426843 (+)
G1513205 NA non-coding upstream 30456 6409964 ~ 6410396 (+)
G1513204 NA non-coding upstream 32992 6407412 ~ 6407860 (+)

Expression


Co-expression Network