syap1 (syap1)


Basic Information

Item Value
gene id syap1
gene name syap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6807279 ~ 6815407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951031.1
CGTGGTGCATTCTGGGTGATTCTGGGAGAAGGAGCGTTCTCCTTCAAATAGTGAATGGGAGTTAATTGGGCGCTAGCGCAAAAAACAAACATTAGCATTAATTTCGTCAAAAATAAGTACAACATGCTACTATTTTACAAGATGTGAGATAATTAACTTGTTCTCTGTAATATCATATAGCTTTGGAATCATGCTATTACGTACTCTAATATCTCTGGTTCAAGACAACCGCAAACTCGAGAAAAAAACAAGCCCCGACCTGAAGATCCCTGACTTCATGATTTGACAtcgttttttccgagttcccagttttgTTGAAAGCACCAATACTTCCTCATTTGTTTCGTATCACTGTCTAACTAACCAATGAAAAGGGACATCACTGTCACCTGTTGGTGTGGAATGAGAAGTAgtgaataaaatacaaaaaatacagtGGGACAGCTTGGAGAGTTATCTGGCAAAGCGGtccatttttttcttcttcttaaaTAACACACTGTTGTTCGAATCCCACATTTGATCTGATAGCGATACTGTTACAAAACGATATAGATGCTAACATTTCCCAGATGTAACAGTAGGCGGCAGTAATGCGCACGTTGTTTATTTATTATGAAGAAGAACAAGAATCGCACCGTTTCCTGGTGACGTAAACACAGAACCATGAAGGTAAAATTCTAAGCACTTAGTTTTACAATCGATTTTCTATCATAGTTACAACCGAAAGACACCGGCGAAAATGTTCAAAGGGTGGGGAACGTGGCTGGGTATAGAGAACACCTCGACGACAGAGGAGAGCGAAGTGGCCGACGTTGCTGTGGAGGAGAAAATCGTTCAAGACCAAAATGAAGTAAACAAACAACACGAACCTCCAGCAACAGAAGAACTGGGGCAGGAGGACGGAGACACCGTCCAACTCATCTCTCAGCAAGCTAAAGGATTCGGTGGCTTAATATTCAACTTTGCCAGCAATGCTACCAAGAAGATCTCCAACTCTGTGGCAGAGACCGCACACACCATCAAGAAGAGCGTGGAAGAAGGGAACATAGATGGAATTTTTGACAAGACTATTTTGGGGGATTTCAAAAAAGAACAGGACAAATTTGTCCAAGAAAAGAAAGCTAAGAAATCAGACACAGCTGTACCACCATGGGTTGGCTACAGTGAGGAGGAAACTATGCAGCAACAGATCCTGGCTTTGTCCGCTGACAGGAGGAACTTCCTGAGAGACCCACCAGCTGGAGTTCAGTTCCAGTTCGACTCTGAGCAGATGTATCCTATCGCCATGGTGATGCTGCAGGAAGATGAGCTACTGAACAGGATGCGCTTCGACCTGGTCCCCAAACAAGTGAAGGAGGATGTGTTCTGGAGGAACTACTTCTACCGTGTGTCCCTGATAAAGCAGTCGGCCCAGCTCACGGCCCTGGCAGCACAGCAGCAGGCTgtagaccacagagaggagcagaagacCATCAGCCCGGAGGGTGTCAGCCTCACAGAAAATACCATCAGACCAAAAACACCTCCAGTATCCATTAGTGACATTCCCAAGAGTGGAGAGgaggaagaggagaatgaGATCTCTACCAGCCCTGGGGTCTCTGAGTTTGTGAGCGATGCCTTTGACTCCTGTAAcatcgaccatgaagacctgaggaaagagatggaacagctggtgctggaCAAGAAGGAGGACGCTGCAACTCCAGAGGaggagacagcggACTGGGAGAAGGAACTCCAGGCAGAGTTACAGGAGTATGAGGTGGTGACGGAGGCAGACAACAAAGATGACAACTGGGATAAAGAGATCGAGAAGATGCTTCAGTCGGACGAGTAGAGGTGACCGACCCGCCTTGCTTCAGTCTAGTATCTCTGATATGAGAGAGAGCACCACGAAGGATCAGAAACCATGACCTTGGTCTAGTCtagaccatagaaatagaatggtaTAGAAAGGAAGGGAACCGCTGCATACAAACCATTAACCGTTTGTTTCAGCACACTCTAGAATGGGAACATCTATGGGGTGAATTCTGATCTGGTGGTGGTCAGGTGTTGAAATACTGTATAATATACATTTTCTGTCTGTACAGTGTAGTGGCTGGCTGTCATTTTAGCTGTGAACGTTTATGGCCGACGAGGCAACTGACATATTGCATATTGTTCTTTCTTCTCTATTCTGCTATTTTTCTTTTTCTAGAATTATT
>NM_001160536.2
GGTGACGTAAACACAGAACCATGAAGGTAAAATTCTAAGCACTTAGTTTTACAATCGATTTTCTATCATAGTTACAACCGAAAGACACCGGCGAAAATGTTCAAAGGGTGGGGAACGTGGCTGGGTATAGAGAACACCTCGACGACAGAGGAGAGCGAAGTGGCCGACGTTGCTGTGGAGGAGAAAATCGTTCAAGACCAAAATGAAGTAAACAAACAACACGAACCTCCAGCAACAGAAGAACTGGGGCAGGAGGACGGAGACACCGTCCAACTCATCTCTCAGCAAGCTAAAGGATTCGGTGGCTTAATATTCAACTTTGCCAGCAATGCTACCAAGAAGATCTCCAACTCTGTGGCAGAGACCGCACACACCATCAAGAAGAGCGTGGAAGAAGGGAACATAGATGGAATTTTTGACAAGACTATTTTGGGGGATTTCAAAAAAGAACAGGACAAATTTGTCCAAGAAAAGAAAGCTAAGAAATCAGACACAGCTGTACCACCATGGGTTGGCTACAGTGAGGAGGAAACTATGCAGCAACAGATCCTGGCTTTGTCCGCTGACAGGAGGAACTTCCTGAGAGACCCACCAGCTGGAGTTCAGTTCCAGTTCGACTCTGAGCAGATGTATCCTATCGCCATGGTGATGCTGCAGGAAGATGAGCTACTGAACAGGATGCGCTTCGACCTGGTCCCCAAACAAGTGAAGGAGGATGTGTTCTGGAGGAACTACTTCTACCGTGTGTCCCTGATAAAGCAGTCGGCCCAGCTCACGGCCCTGGCAGCACAGCAGCAGGCTgtagaccacagagaggagcagaagacCATCAGCCCGGAGGGTGTCAGCCTCACAGAAAATACCATCAGACCAAAAACACCTCCAGTATCCATTAGTGACATTCCCAAGAGTGGAGAGcaggaggaagaggagaatgaGATCTCTACCAGCCCTGGGGTCTCTGAGTTTGTGAGCGATGCCTTTGACTCCTGTAAcatcgaccatgaagacctgaggaaagagatggaacagctggtgctggaCAAGAAGGAGGACGCTGCAACTCCAGAGGaggagacagcggACTGGGAGAAGGAACTCCAGGCAGAGTTACAGGAGTATGAGGTGGTGACGGAGGCAGACAACAAAGATGACAACTGGGATAAAGAGATCGAGAAGATGCTTCAGTCGGACGAGTAGAGTTGGGATGTGTGCGTCTATCCAAATAAATACTTGTTTCTGTGCTACTCAAATCCTGCTTTCAGTTTTTCCCTAATAAATATACTTCTTTC

Function

symbol description
syap1 Orthologous to human SYAP1 (synapse associated protein 1).

NR:

description
synapse-associated protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951031.1 False 2213 mRNA 0.45 9 6807279 6815311
NM_001160536.2 True 1292 mRNA 0.49 10 6807925 6815407

Neighbor

gene id symbol gene type direction distance location
LOC110516612 LOC106574917 coding upstream 96993 6705632 ~ 6710286 (+)
LOC110514219 LOC106594890 coding upstream 233671 6493403 ~ 6573608 (+)
LOC118941080 NA coding upstream 315527 6490231 ~ 6491752 (+)
LOC110496964 LOC106594657 coding upstream 347348 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 coding upstream 403762 6398763 ~ 6403517 (+)
LOC110495421 LOC106593174 coding downstream 79 6815486 ~ 6837266 (+)
LOC110495417 LOC106575977 coding downstream 27952 6843359 ~ 6850547 (+)
LOC110496992 LOC106574897 coding downstream 47724 6863131 ~ 6907469 (+)
LOC118941079 LOC106572464 coding downstream 131905 6947312 ~ 6958804 (+)
LOC110513752 LOC106575969 coding downstream 217171 7032578 ~ 7102239 (+)
G1513387 NA non-coding upstream 5042 6801994 ~ 6802237 (+)
G1513386 NA non-coding upstream 5614 6801464 ~ 6801665 (+)
G1513385 LOC106575907 non-coding upstream 5997 6800540 ~ 6801282 (+)
G1513382 NA non-coding upstream 11988 6794590 ~ 6795291 (+)
G1513359 NA non-coding upstream 28672 6778127 ~ 6778607 (+)
G1513394 NA non-coding downstream 9747 6825154 ~ 6825496 (+)
G1513396 NA non-coding downstream 15257 6830664 ~ 6831567 (+)
G1513399 NA non-coding downstream 40849 6856256 ~ 6856879 (+)
G1513404 NA non-coding downstream 96906 6912313 ~ 6912941 (+)
G1513407 NA non-coding downstream 104630 6920037 ~ 6920260 (+)
LOC110518779 dis3 other upstream 628168 6172823 ~ 6188926 (+)
G1513452 NA other downstream 210801 7026208 ~ 7026810 (+)
G1513874 NA other downstream 611176 7426583 ~ 7426971 (+)
G1513922 NA other downstream 804889 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 943341 7758036 ~ 7801058 (+)

Expression


Co-expression Network