LOC110495583 (LOC106575874)


Basic Information

Item Value
gene id LOC110495583
gene name LOC106575874
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9878673 ~ 9879663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570909.2
TCTGCCCCTCACGCAACCATGACAATGGGAAAGATCATCTTCTATGAGGACAGGAATTTCCAGGGTCGGCACCATGAGTGCATGAGCGACTGTGCCGACCTGCACTCCTACTTCAACCGCTGCAACTCCATCAAGGTGGAGAGCGGCATGTTCATGGTCTACGAGAGGCCCAACTACACTGGCCACCAGTACTTCCTGAGGAGGGGAGAGTACAATGACAACCAGCGCATGATTGGCATCAACGACTGTATCAGGTCCTGCCGCATGATCCCCATGCACCGCGGCTCCTACAGGATGAGGCTGTACGATCGCCCCGACATGAGTGGCCAGATGCAGGAGCTGAACGACGACTGTCCCAATGTCCAGGACCGCTTCCGCATGTCCGACATCAACTCCTGCAACGTGATGGACGGCCACTGGCTCATGTACGACCAGCCCAACTACAAGGGCAGACAGTACTACCTGAAGCCTGGCGAGTATCGCAGACCCAGCGACTGGGGTGGCCTGAGCCCCAGGATCGGATCCCTCCGACGGATCTCTGACTCCAACAACTAAAAGTTCTATGTTCCATTTCTGTTCTCAATAAAGCTGCATGTTCAACCAAA

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570909.2 True 605 mRNA 0.55 3 9878673 9879663

Neighbor

gene id symbol gene type direction distance location
LOC110527264 LOC106575865 coding downstream 29214 9848478 ~ 9849459 (-)
LOC110495576 LOC106575864 coding downstream 35888 9838569 ~ 9842785 (-)
LOC118941060 LOC106596684 coding downstream 42857 9834252 ~ 9835816 (-)
LOC110519295 LOC106595629 coding downstream 49426 9828241 ~ 9829247 (-)
LOC110527257 LOC106575805 coding downstream 93566 9767621 ~ 9785107 (-)
LOC110495582 LOC106574807 coding upstream 3132 9882795 ~ 9893229 (-)
LOC100653460 LOC106575875 coding upstream 13722 9893385 ~ 9900718 (-)
LOC110514354 LOC106575825 coding upstream 120377 10000040 ~ 10057419 (-)
LOC110497040 LOC106593457 coding upstream 194612 10074275 ~ 10117772 (-)
LOC110497041 LOC106574885 coding upstream 258681 10138344 ~ 10146845 (-)
G1515932 NA non-coding downstream 8784 9869650 ~ 9869889 (-)
G1515911 NA non-coding downstream 40759 9837677 ~ 9837914 (-)
G1515904 NA non-coding downstream 51930 9816806 ~ 9826743 (-)
G1515875 NA non-coding downstream 130269 9747738 ~ 9748404 (-)
G1515632 NA non-coding downstream 156399 9721764 ~ 9722274 (-)
G1515937 NA non-coding upstream 2123 9881786 ~ 9882092 (-)
G1515944 NA non-coding upstream 24934 9904597 ~ 9904872 (-)
G1515945 NA non-coding upstream 25683 9905346 ~ 9905790 (-)
G1515948 NA non-coding upstream 33732 9913395 ~ 9914965 (-)
G1515880 LOC102777708 other downstream 113448 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 384791 9486842 ~ 9501240 (-)
G1515456 NA other downstream 399455 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 455092 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 485065 9391447 ~ 9402475 (-)
LOC110516308 LOC105023143 other upstream 295196 10174859 ~ 10229881 (-)
G1516062 LOC107575789 other upstream 330655 10210318 ~ 10210833 (-)
G1516107 NA other upstream 379162 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 973906 10853569 ~ 10856314 (-)
G1516757 NA other upstream 1168742 11048405 ~ 11048928 (-)

Expression


Co-expression Network