LOC110514354 (LOC106575825)



Basic Information


Item Value
gene id LOC110514354
gene name LOC106575825
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10000040 ~ 10057419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036951765.1
CTCCTCTCTCGCACCCTGTCAAACGAAGTCTCCGTTACCTCCCTCTCTCGTATCATCTATAGCATAACCAACGGTCCGATATGTGGTTACCTTGCTGCTTCCACTATTCGTTGAGCCCATCTATGGCTCCGGTAGTAAAGGCAAAGTAAAAACATTCTAACTTCATATCCTCTACAAAGCAAGGAATCAATGAACAATCGTGGAATCTTGAGTTGTGCTGCCTGTCGTCCATCCCCTCGAGCGCATTATAGGCGGTTCAATCTAGGAGCACCGACagtgaggtctctctctctctctctctctctctctctcgctctccacccccttcacacacaaacaaacacgcaAGCAAGCACACAGAGCGTATTTCCTGTATCTGCCGTATCTATCGTCCTCTCGCTTGCGCTCTGTCAAGCTGCTTTGCTGTCACACTCAAGTAGAGCGCGGAGAAGAACCATCGAGCTCCGAGTGACGGATATCCGACTTCTGCTCCCCGAAACATCCCCCAGTCCAGCCCTGGATTCAATACTTATCATCAATGGACAGAGCTTTCTACCCAACCAGGCGAGGTACAGACACCACGTAAACAGTCCGTACGCTCTGTTGGGAGTCCCTCCTGGAGGTTGGAGGGGGATGGAGCGTGGTGGTACTGAGAGCCCCTGTCTGCGGGACAGTCCCGAGCAGAGAGGGGACAGCCCGGACACCTGCGCCCCCCCGCCGGGCAAGATGAGCCGTCTGGAGGGCAACGGGAGCCCCACGGGTCCACACACGCGCCTCAACGGCACCCCGTTACGGCCCCTCGGAGgtctgaTGATCCCTGTGTACTGTGTAGTGGAGCAGGCAGATGGGGTCGTGTCTGGGGGTGTGGTCTCTGACAGGGATGGGCGTGGTGACAGACATGCTGAGTTTGTATTGGTTCGTAAGGACATCCTCTTCACCCAGCTGGTGGAGACAGCCCTTGTGGCCCTGGGCTACTCCCACAACTCAGCCGTGCAGGCGAGAGGCATCATCAAAGTGGGCCGCTGGAACCCCATGCCCATCCACTACCTGACTGACGCCCCCGAGGCCACCGTCGCCGACATGCTGCTGGACGTCTATCACATGGTTACCCTCCGCATCCTACTGCAGAGCTTTTCCAGGCTGGAGGATCTGCCGTCAGAGCAGTGGAACCACGCTACGGTGAGGAACGCCCTCAAAGAGCTACTGAAGGAGATGAACCAGAGTTCCCTGGCCAAGGAGTGCCCTCTCTCTCAGagTATGATCTCTGCCATAGTCAACAGCTCTTACTATGCCAACGTGTCCACCTCCAAGTGCCAGGAGTTTGGCCGCTGGTACAAGAAGTACAAAAGGATTCAAGGTGAATACCTGGAGAATATGTGGTCAGGACGGGATAAACCTGATATTAAAGTGGAGAGGGACAGCATGTCAGACGTATGTGGCCTGGTACAGCGCCCCTCCTCTCACCTGACCCCACCAACCCAGCTTGGAGGGTTACCCCTCAAGGTTGGACTAGGGGACCCCCAAACCCCCAGCCAGCAACAGGCCCTCCCCCACCTGTCTCAGCAGCACTCACCCCATGCCCAGCACCACCACAGCCCACCGCCTAGAGGCCAGGCGCCCCCTCCCGGTCCTCCGCCCTCCCTCCAACCCTTACTGGGCCCGGgcggtctcctctccccccagCTCAGCCCTCAGATGGTCAGGCAACAACTGGCCATGGCCCACCTCATCAACCAGCAGCTAGCTGTTAGCCGCCTGCTAGCCCACCAGCACGGTCCGCAGGCCCTCCACCAGCAGCAGCACCAACAGTTCCTCAACCACCCACCCATCCCGCGCTCCTGCAAAGCCCCAGGAGGCCTCAGCGATCCTGGGATGAATCCGTCGGCCGTGGAGGTCTGTCCGGACATCTACCATCAGGTCAGAGAGGAGCTGAAGAGGGCCAGCGTCTCTCAGGCTGTGTTCGCCAGGGTGGCCTTCAACCGCACACAGCCCAAGCCCCCCCTGACCCAGGTCAGTGCTGAGCTGCCCCTGAAGATGGAGTCCCTGGTCAACATCAACATTACCTCTGGGATCTATGATGAGATCCAGCAGGAGATGAAGAGAGCCAAGGTGTCCCAGGCCCTGTTCGCCAAGGTGGCCGCCAACAAGAGCCAGgGCTGGCTGTGTGAGCTGCTGCGTTGGAAGGAGAACCCCAGCCCAGACAACCGGACTCTGTGGGAGAACCTGTGTACCATTAGAAGGTTCCTGACCCTGTCCCAGGCTGAGAGGGACATGGTGTATGAAGAGGAGTCCAAGCACCACTACAGTGAGAGGCTTCACACTGTCCTCCACATGTCTCCAGAAACACAGGCACTGCACAGGCAGCCCTTACCTCCAAGGAAGGCCCCATCCCCATCTCCCATGCGGGACCCATCCCCTCTCCCCACTCCCACGCCTGGCCCCAGGGGCCACAACTCGGATGGGACTCGAGGCAAGGACAACGGCAGCATGAGTGGCGGGTCCAGAAAGCTGCGGTCGCGGACCCGGATCTCCCTGGAGGCTCTGGCCATCCTGCAGAGCTTCATCGGTGACGTGGGCCTCTACCCTGACCAGGAGGCTATCCACACCCTGTCGGCCCAGCTGGACCTTCCTAAGCACACCCTGGTCAAGTTCTTCCAGAACCAGCGCTACCACATCAAGCACCACAACAGCACCACCCAGATGAGCAGTGCAGGGGCGGGGGAGGAGGGGGACGgcgagggggaggagagggacggcGAGGGGGTGGAAGGGACTGAGTACCGCGACGGGGAGCTGCTCTCTGAGTCGGAGGGATCAGATGTCGCCGAGTCCAGCGAGGACGGGCGGGGTGGTTCCGAGGAGACTGACAGAacggagggaagaggaggaggagaaagaggagtaggaggaatggagggagaggaggagaaggacaaTGGCAAAGCCTCAGGCCCCCGGCCCACCTCCTTACCCCCCTATACGTGCCCAAAGAGTCCCAATGACTCTGGAGAGCACCATAGATAACCCCCTCGGGCCATGGAGGAGGgaacgacagacagacaagcccaggacagagggatggagggatgacgaGACAGATAGAACAGAGGGGAGAACATATGGACGGATGAGAAAAGGATGAGGAAAGGATGAGGAAAGAACGTGTCTGGTACTGAAGACCATGAGGATGGTTTTAAGTAGAGGAGAGTCctaccacacacaccacagtggATGTGGGTACAGGTCAGGACCTATGGAGGTAGACAGGCAGGGATGGTGAAAAGACAACAGAGTACCTCAGAATGAGAGAAGAGATGCACTCTGGGTAATGGAGTCATAGACAATGACAGGCTGCTGTAAGAACATGATTCATTGTTTAGAAAATGAAAATGTTTTCATTTATTAAATGGGCATATCCACAAGGATGATTAAAACCAAGGCCCCAGTTATGAGTTTCATCACAGAGTCTGTCGTCGTATTCTTAGAGCAGCGCCCTGAGATACTGTACAGTACGTGAACAGTTTGTTCTGATTGGTTATCCTATGAACGTTCCCATAATGTCTGGGAAATCCTTGCATTGGCTGTGTGTAATGCATTCACTCTCCCTTACCGTCAACAAATCGTTCCCATTTCACCAACCTAGCAGCACTTAAATCAAAACCATATTTAATGTTCTTGTAATAATCTAAGTTTATTGTCCTCATTATGGCTGTTATTCATATTTTCTATTTGATATCGGTGAAGATGTGTTGCTTTCTGTGTGTGAGAtatattcacaaagtgtctcatagtaggagtgctgatctcggATCAGTTTATCCTTTTACattataatgaataagattacatggacaggggggacctgatcctagatcagcactctgagacGTTTTATGAATACGGGCCATCGTAAAGTTGTTACTGAACTGAGTGTACATCGCCAGATGTCCTGTATGTTGATCAGTGATCTGCTTACCGTTTCCAAAACAAACAGTGACCAATAAATGAACTTCTGAAAACAATTGTTGCTAGGTGAAACCTGATGTTGAATCTCCTTTTTTAAACTGGCTACAATCAGCATCTGAATGGTTAATGAGTAAGTGTGGGTGAGGGCTAGATTCATGATATTACCCTCTTTGAGGTGAAATTACATTCTCACATATTAGATGGAAATTAGTTGCAATCTGAACATAATAAATATAATATTGACTTATCTGTGTTGGTAATTTAAGTTGGC
>XM_036951764.1
TCCTCTCTCGCACCCTGTCAAACGAAGTCTCCGTTACCTCCCTCTCTCGTATCATCTATAGCATAACCAACGGTCCGATATGTGGTTACCTTGCTGCTTCCACTATTCGTTGAGCCCATCTATGGCTCCGGTAGTAAAGGCAAAGTAAAAACATTCTAACTTCATATCCTCTACAAAGCAAGGAATCAATGAACAATCGTGGAATCTTGAGTTGTGCTGCCTGTCGTCCATCCCCTCGAGCGCATTATAGGCGGTTCAATCTAGGAGCACCGACagtgaggtctctctctctctctctctctctctctctcgctctccacccccttcacacacaaacaaacacgcaAGCAAGCACACAGAGCGTATTTCCTGTATCTGCCGTATCTATCGTCCTCTCGCTTGCGCTCTGTCAAGCTGCTTTGCTGTCACACTCAAGTAGAGCGCGGAGAAGAACCATCGAGCTCCGAGTGACGGATATCCGACTTCTGCTCCCCGAAACATCCCCCAGTCCAGCCCTGGATTCAATACTTATCATCAATGGACAGAGCTTTCTACCCAACCAGGCGAGGTACAGACACCACGTAAACAGTCCGTACGCTCTGTTGGGAGTCCCTCCTGGAGGTTGGAGGGGGATGGAGCGTGGTGGTACTGAGAGCCCCTGTCTGCGGGACAGTCCCGAGCAGAGAGGGGACAGCCCGGACACCTGCGCCCCCCCGCCGGGCAAGATGAGCCGTCTGGAGGGCAACGGGAGCCCCACGGGTCCACACACGCGCCTCAACGGCACCCCGTTACGGCCCCTCGGAGgtctgaTGATCCCTGTGTACTGTGTAGTGGAGCAGGCAGATGGGGTCGTGTCTGGGGGTGTGGTCTCTGACAGGGATGGGCGTGGTGACAGACATGCTGAGTTTGTATTGGTTCGTAAGGACATCCTCTTCACCCAGCTGGTGGAGACAGCCCTTGTGGCCCTGGGCTACTCCCACAACTCAGCCGTGCAGGCGAGAGGCATCATCAAAGTGGGCCGCTGGAACCCCATGCCCATCCACTACCTGACTGACGCCCCCGAGGCCACCGTCGCCGACATGCTGCTGGACGTCTATCACATGGTTACCCTCCGCATCCTACTGCAGAGCTTTTCCAGGCTGGAGGATCTGCCGTCAGAGCAGTGGAACCACGCTACGGTGAGGAACGCCCTCAAAGAGCTACTGAAGGAGATGAACCAGAGTTCCCTGGCCAAGGAGTGCCCTCTCTCTCAGagTATGATCTCTGCCATAGTCAACAGCTCTTACTATGCCAACGTGTCCACCTCCAAGTGCCAGGAGTTTGGCCGCTGGTACAAGAAGTACAAAAGGATTCAAGGTGAATACCTGGAGAATATGTGGTCAGGACGGGATAAACCTGATATTAAAGTGGAGAGGGACAGCATGTCAGACGTATGTGGCCTGGTACAGCGCCCCTCCTCTCACCTGACCCCACCAACCCAGCTTGGAGGGTTACCCCTCAAGGTTGGACTAGGGGACCCCCAAACCCCCAGCCAGCAACAGGCCCTCCCCCACCTGTCTCAGCAGCACTCACCCCATGCCCAGCACCACCACAGCCCACCGCCTAGAGGCCAGGCGCCCCCTCCCGGTCCTCCGCCCTCCCTCCAACCCTTACTGGGCCCGGgcggtctcctctccccccagCTCAGCCCTCAGATGGTCAGGCAACAACTGGCCATGGCCCACCTCATCAACCAGCAGCTAGCTGTTAGCCGCCTGCTAGCCCACCAGCACGGTCCGCAGGCCCTCCACCAGCAGCAGCACCAACAGTTCCTCAACCACCCACCCATCCCGCGCTCCTGCAAAGCCCCAGGAGGCCTCAGCGATCCTGGGATGAATCCGTCGGCCGTGGAGGTCTGTCCGGACATCTACCATCAGGTCAGAGAGGAGCTGAAGAGGGCCAGCGTCTCTCAGGCTGTGTTCGCCAGGGTGGCCTTCAACCGCACACAGGGCCTGCTGTCTGAGATCCTTCGTAAAGAGGAGGACCCTCGCCAGGCCTCCCAGTCACTCCTGGTCAACCTCAAAGCTATGCAGAACTTCCTGAACCTCCACGAGAGTGAACGCGACCACATTTACCAGGAGGAGCGTGAACGCAGCATGAACCCCAACCTCAACCTAGGCAACCTGACCCCAACCAATCAGAACTCCAGCTCCACTGGCCAGCGACTCACACAGCCCAAGCCCCCCCTGACCCAGGTCAGTGCTGAGCTGCCCCTGAAGATGGAGTCCCTGGTCAACATCAACATTACCTCTGGGATCTATGATGAGATCCAGCAGGAGATGAAGAGAGCCAAGGTGTCCCAGGCCCTGTTCGCCAAGGTGGCCGCCAACAAGAGCCAGgGCTGGCTGTGTGAGCTGCTGCGTTGGAAGGAGAACCCCAGCCCAGACAACCGGACTCTGTGGGAGAACCTGTGTACCATTAGAAGGTTCCTGACCCTGTCCCAGGCTGAGAGGGACATGGTGTATGAAGAGGAGTCCAAGCACCACTACAGTGAGAGGCTTCACACTGTCCTCCACATGTCTCCAGAAACACAGGCACTGCACAGGCAGCCCTTACCTCCAAGGAAGGCCCCATCCCCATCTCCCATGCGGGACCCATCCCCTCTCCCCACTCCCACGCCTGGCCCCAGGGGCCACAACTCGGATGGGACTCGAGGCAAGGACAACGGCAGCATGAGTGGCGGGTCCAGAAAGCTGCGGTCGCGGACCCGGATCTCCCTGGAGGCTCTGGCCATCCTGCAGAGCTTCATCGGTGACGTGGGCCTCTACCCTGACCAGGAGGCTATCCACACCCTGTCGGCCCAGCTGGACCTTCCTAAGCACACCCTGGTCAAGTTCTTCCAGAACCAGCGCTACCACATCAAGCACCACAACAGCACCACCCAGATGAGCAGTGCAGGGGCGGGGGAGGAGGGGGACGgcgagggggaggagagggacggcGAGGGGGTGGAAGGGACTGAGTACCGCGACGGGGAGCTGCTCTCTGAGTCGGAGGGATCAGATGTCGCCGAGTCCAGCGAGGACGGGCGGGGTGGTTCCGAGGAGACTGACAGAacggagggaagaggaggaggagaaagaggagtaggaggaatggagggagaggaggagaaggacaaTGGCAAAGCCTCAGGCCCCCGGCCCACCTCCTTACCCCCCTATACGTGCCCAAAGAGTCCCAATGACTCTGGAGAGCACCATAGATAACCCCCTCGGGCCATGGAGGAGGgaacgacagacagacaagcccaggacagagggatggagggatgacgaGACAGATAGAACAGAGGGGAGAACATATGGACGGATGAGAAAAGGATGAGGAAAGGATGAGGAAAGAACGTGTCTGGTACTGAAGACCATGAGGATGGTTTTAAGTAGAGGAGAGTCctaccacacacaccacagtggATGTGGGTACAGGTCAGGACCTATGGAGGTAGACAGGCAGGGATGGTGAAAAGACAACAGAGTACCTCAGAATGAGAGAAGAGATGCACTCTGGGTAATGGAGTCATAGACAATGACAGGCTGCTGTAAGAACATGATTCATTGTTTAGAAAATGAAAATGTTTTCATTTATTAAATGGGCATATCCACAAGGATGATTAAAACCAAGGCCCCAGTTATGAGTTTCATCACAGAGTCTGTCGTCGTATTCTTAGAGCAGCGCCCTGAGATACTGTACAGTACGTGAACAGTTTGTTCTGATTGGTTATCCTATGAACGTTCCCATAATGTCTGGGAAATCCTTGCATTGGCTGTGTGTAATGCATTCACTCTCCCTTACCGTCAACAAATCGTTCCCATTTCACCAACCTAGCAGCACTTAAATCAAAACCATATTTAATGTTCTTGTAATAATCTAAGTTTATTGTCCTCATTATGGCTGTTATTCATATTTTCTATTTGATATCGGTGAAGATGTGTTGCTTTCTGTGTGTGAGAtatattcacaaagtgtctcatagtaggagtgctgatctcggATCAGTTTATCCTTTTACattataatgaataagattacatggacaggggggacctgatcctagatcagcactctgagacGTTTTATGAATACGGGCCATCGTAAAGTTGTTACTGAACTGAGTGTACATCGCCAGATGTCCTGTATGTTGATCAGTGATCTGCTTACCGTTTCCAAAACAAACAGTGACCAATAAATGAACTTCTGAAAACAATTGTTGCTAGGTGAAACCTGATGTTGAATCTCCTTTTTTAAACTGGCTACAATCAGCATCTGAATGGTTAATGAGTAAGTGTGGGTGAGGGCTAGATTCATGATATTACCCTCTTTGAGGTGAAATTACATTCTCACATATTAGATGGAAATTAGTTGCAATCTGAACATAATAAATATAATATTGACTTATCTGTGTTGGTAATTTAAGTTGG

Function


NR:

description
PREDICTED: DNA-binding protein SATB2-like isoform X1

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K23226 SATB2; DNA-binding protein SATB2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036951765.1 False 4237 mRNA 0.54 11 10000040 10057419
XM_036951764.1 True 4460 mRNA 0.54 12 10000041 10057418

Neighbor


gene id symbol gene type direction distance location
LOC100653460 LOC106575875 coding downstream 99322 9893385 ~ 9900718 (-)
LOC110495582 LOC106574807 coding downstream 111846 9882795 ~ 9893229 (-)
LOC110495583 LOC106575874 coding downstream 120377 9878673 ~ 9879663 (-)
LOC110527264 LOC106575865 coding downstream 150581 9848478 ~ 9849459 (-)
LOC110495576 LOC106575864 coding downstream 157255 9838569 ~ 9842785 (-)
LOC110497040 LOC106593457 coding upstream 16856 10074275 ~ 10117772 (-)
LOC110497041 LOC106574885 coding upstream 80925 10138344 ~ 10146845 (-)
LOC110495586 LOC106574945 coding upstream 91592 10149011 ~ 10158506 (-)
LOC110516308 LOC105023143 coding upstream 118072 10174859 ~ 10229881 (-)
LOC110527275 LOC106590732 coding upstream 317352 10374771 ~ 10387073 (-)
G1515981 NA non-coding downstream 1101 9998313 ~ 9998939 (-)
G1515972 NA non-coding downstream 22760 9976998 ~ 9977280 (-)
G1515971 NA non-coding downstream 23558 9976278 ~ 9976482 (-)
G1515953 NA non-coding downstream 50380 9923421 ~ 9949660 (-)
G1515950 NA non-coding downstream 83430 9916315 ~ 9916610 (-)
G1516023 NA non-coding upstream 55194 10112613 ~ 10112839 (-)
G1516024 NA non-coding upstream 55516 10112935 ~ 10113220 (-)
G1516026 NA non-coding upstream 58585 10116004 ~ 10116747 (-)
G1515880 LOC102777708 other downstream 234815 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 506158 9486842 ~ 9501240 (-)
G1515456 NA other downstream 520822 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 576459 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 606432 9391447 ~ 9402475 (-)
G1516062 LOC107575789 other upstream 152899 10210318 ~ 10210833 (-)
G1516107 NA other upstream 201406 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 796150 10853569 ~ 10856314 (-)
G1516757 NA other upstream 990986 11048405 ~ 11048928 (-)

Expression



Co-expression Network