LOC110497040 (LOC106593457)


Basic Information

Item Value
gene id LOC110497040
gene name LOC106593457
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10074275 ~ 10117772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951767.1
ATTCATCATCTGGCAACCACCCACAACAATCGGATATTACTTTCCTTCTTCTCTTTGTTTTTGACCATTTGAGTGGTCAACCCCGCGGTCTAAAAGTGGAGCCCCGAGGATCTCGGATCGGCGCGCTCCTACAGGGGCTCGGAGGCGCGCCCGGGGCTTCCAGATTTTTGCCCGGTTTCGTCGCAGCGGAGACCGATGCCTCGAATCGCCGAGACCGGAGAGGGTCTCAACGGTCTAGAACGCCAGCGACGAGGGGTCGTCTGGCGCCACAAAACACCTTCCTAGACACAATTGCAAACCGGTTTGATGGGACCCacagtaACTTTGTCCTGGGTAACGCCCAGGTGCAGTCGCTCTACCCCATCGTCTACTGCTCGGACGGCTTCTGCGAGCTGACCGGCTTCGCCCGCGGTGAGCTGATGCAAAAGAGCTGCAGGTGTCACTTCCTGTACGGCTTGGACACCAGCGAGAGCCTAACCACTCAGATCCAAAAGGCCCTAGACGAGCGGCAGGAATTTAAGACTGAGTGCATCCTGTACAAGAAGGGGGGAGAGCAGTTCTGGTGTCTGCTGGACATAGTGCCCATCAAGAATGAGAAGGGAGAGGTGGTGCTGTTCCTGGTCTCCCACAAGGACATCACAGAGACCAGGAAGGACCAGCAGGACCAGGGGGACCATGGACAAGACTCAGACactgACGAGGAGACAGGTCTGGAGGTGCACCAGATCACCCGTCCCCCAGGCTTTGACCACAACCGCCGGCGTAGTCGGGCCGTACTCTACCAGTTGTCTGGCCACTTGCAGAAACAGGACAAGAACAAGCTCAAGATCAACAACAGTATGTTTGGGGCGACCACCAACCCCATCCCTGAGTACAAGGTGGCTGCAACCCCAAAGTCTCGCTTCATCCTGCTACACTATGGGACCTTCAAGGCGGGCTGGGATTGGCTGATCCTCCTGGCCACTTTCTATGTGGCCATCACCGTGCCCTATAACGTTTGCTTCACCGTGGTGGAGGGGCGGGACGAGGGGGGCGGCTCTGGGGCTCGCAACCCCCCCAGTTACAGCGACATCTTGGTGGAGATTCTGTTCATCATTGACATTGCACTGAACTTCCGCACCACCTATGTGAGTACGACGGGTCAGGTGGTTTATGAAGCCCGCTCTATCTTTGTACACTACGCCACCTCCTGGCTGTTTGTTGACCTGATCGCCGCCCTGCCCTTTGACCTGCTCTACGCCTTCAATATCAGCGTGTACTTTGGGGTCCACCTGCTGAAGACAGTGCGGTTACTGCGTCTCCTGAGGCTGCTCCAGAAGCTGGAGCGTTACTCTGAGTACAGCGCCGTGGTTCTCACCCTGCTCATGTCTACTTTCGCCCTGCTGGCCCACTGGATGGCCTGCGTCTGGTACTTCATCGGACGCAAGGAGATCGAGAGCAACAGCCTGAGCTCCTGGGATAATGGCTGGCTTCATGAACTGGCAAAACGTCTCGACACCCCTTACTTCCTGTCACCTTTAACCTCGTTCCTCGGAGTCACTGATTCGCTGCACACTTCTAGAACGAATGGGTTGGCAGCCAATTACAATCACTGGAACACATCAGGGTCAGAGCCGATTGGACAGGATTTCTCCTCGTCCTTCAGCTCCGGCCAATGGAACGTCAGCGAGGCGGGGCGGAGCCAGGTGAATGGCTCAGGGGTCTCGGGGGCGGCGCTAGGAGGCGGGCCGTCAGTGAGGAGCTCCTACGTGACGTCTTTGTACTTCGCTCTGAGCAGTCTGACCAGCGTGGGCTTCGGAAACGTCTCAGCCAACACCGACTCAGAGAAGATCTTCTCCATCTGCACCATGCTCATAGGAGcCCTGATGCATGCTGTGGTATTCGGTAACGTGACAGCCATCATCCAGAGGATGTACTCTCGGCGCTCCCTCTACCACACACGTACCAAGGACCTGAAGGACTTTATCCGTGTCCACGGGCTGCCCAAGGCCCTGGAGCAACGCATGATGGAGTGCTTCCAGACCACCTGGTCCGTCAACAACGGCATCGACGTCAGCGAGCTGTTGAAAGACTTCCCAGATGAGTTGAGGGCAGACATCGCCATGCAGCTGAACAAGGATCTCCTGCAGCTGTCTCTGTTTGAGTCGGCCAGTAGGGGGTGTCTGCGCTCCCTGTCCCTCATCATCAAGACATCGTTCTGCGCCCCGGGGGAGTATCTCATCCGCCAGGGAGACGCCCTGCAGGCCATCTACTTTGTCTGCTCTGGGTCCATGGAGGTGCTGAAGGACAACACAGTGCTGGCTATACTGGGTCGTGGGGACCTGATCGGCTCTGACTTCCTGACCAAGGAGCAGGTGATCAAGACCAATGCCAATGTGAAGGCCCTGACCTACTGTGACCTGCAGTACATCAGTCTGAAGGGGCTCAGAGAGGTGCTCTGGCTCTACCCAGAGTACGCCCAGAAGTTCATCACTGAGATACAACATGATCTGACTTACAATCTGAGAGAGGGGCATACGGCTGAGatGGACTGGGTGACTAACGGTGGTATTGTGAAGAAGCTTTCCTCCATCAAAGAGGACGAGGAGGGATCTGAGGAGGCTCAACACTCGCCCCTCCCCAAAATGCCCCGTTCCCCTCTGGGTCTGGGATGGGGGCTGGGCTCGCCCCTGCGCTCCCCACTGCGCTCGCCCCTGCGTAGCCCCTCCCGCCCCCCCACAGACCACCGCAGGCACCGCCCCACCACTCTCCAGATTCCTGTGGTGAGCTTCAGTTGTGCCCCTCTGGACCTCAGTCCCAGGTTTGTGGATGGCATTGAAACAGACAGTGGTAGTGGTTTGGGCCAGAAGTTTGACTTCAGCCCCAGTGTGACCCAGAACATCCCACCCAGCTCTAGTCCAGGAATGCAGGAGGATGCAGAGACCGTACAGACTATTACTAAACTGACAGAAGAGATGACTAGCCTATCCCTGCAGGTGTCACAAGTCAGCCAGGACCTCCAGGAAATGACACGGCTTCTCAAGCCcctcctccagcctctcctcctccAAGGCTCTTCCcagtccatcctctcctcccttatgGCTGCCCTGACTCCGCCCACCAGTGAGACTCTCAGTAGCTCCGCCCCTCCACCTCCCAAAACTCCTTCCAACACCAACTTACTGCTGTTGGAagatacagagatagagggggagaggagacaccCGGATCGCCACTTTCAGACACCTTCCGGGGGTCTGACAACCGTCCCCCAGCCCCATCCTCACTCGGCTTCTATAGGGGCAGAGATGACCCCGACTAGCCCTGTTCAGCTCAGCTTCATCGACGAGGAGAGGCCCACTGTCTGAGAGAAAGGATTCACCAACACAGGACTGGCATGACTAGACTGGCATCATGGCATGGCTGGCATGACACCCCTCATATCACTGCATGAGGCACATGGCTGCCCTGGGTTACTGTTTATTTAATACTAAGATAACATGAAGTAAGTTATTATTACCAAATGTATTTATTCCTAATATGAAATGTTATGACCTGACAAGTTATTGTTATACCATATCTATCACTGGCTATGACCAAATGAAACACATCCAAAATATAAAAGTCTTCTTTTACAGTTTAGGCTCTAGAGTTGGTTTGGCGCAGAGTGACTGCAGAGAGGATCTTGTCCATTGGTTGTCGGCTGTATTAGACATTATCAGACTTACACCAAACACACAATAAAAACACAACTCGTCA
>TU1735237
GAGGGGGGCGGCTCTGGGGCTCGCAACCCCCCCAGTTACAGCGACATCTTGGTGGAGATTCTGTTCATCATTGACATTGCACTGAACTTCCGCACCACCTATGTGAGTACGACGGGTCAGGTGGTTTATGAAGCCCGCTCTATCTTTGTACACTACGCCACCTCCTGGCTGTTTGTTGACCTGATCGCCGCCCTGCCCTTTGACCTGCTCTACGCCTTCAATATCAGCGTGG

Function

NR:

description
potassium voltage-gated channel subfamily H member 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951767.1 False 3741 mRNA 0.55 15 10074275 10117772
TU1735237 True 232 lncRNA 0.56 2 10102978 10105340

Neighbor

gene id symbol gene type direction distance location
LOC110514354 LOC106575825 coding downstream 16856 10000040 ~ 10057419 (-)
LOC100653460 LOC106575875 coding downstream 173557 9893385 ~ 9900718 (-)
LOC110495582 LOC106574807 coding downstream 186081 9882795 ~ 9893229 (-)
LOC110495583 LOC106575874 coding downstream 194612 9878673 ~ 9879663 (-)
LOC110527264 LOC106575865 coding downstream 224816 9848478 ~ 9849459 (-)
LOC110497041 LOC106574885 coding upstream 20572 10138344 ~ 10146845 (-)
LOC110495586 LOC106574945 coding upstream 31239 10149011 ~ 10158506 (-)
LOC110516308 LOC105023143 coding upstream 57719 10174859 ~ 10229881 (-)
LOC110527275 LOC106590732 coding upstream 256999 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 1071020 11185131 ~ 11194773 (-)
G1515993 NA non-coding downstream 36337 10033422 ~ 10037938 (-)
G1515983 NA non-coding downstream 67856 10004610 ~ 10006419 (-)
G1515981 NA non-coding downstream 75336 9998313 ~ 9998939 (-)
G1515972 NA non-coding downstream 96995 9976998 ~ 9977280 (-)
G1515971 NA non-coding downstream 97793 9976278 ~ 9976482 (-)
G1516038 NA non-coding upstream 41397 10159169 ~ 10159388 (-)
G1516046 NA non-coding upstream 48332 10166104 ~ 10166492 (-)
G1516039 NA non-coding upstream 50254 10168026 ~ 10168977 (-)
G1516042 NA non-coding upstream 51517 10169289 ~ 10169803 (-)
G1515880 LOC102777708 other downstream 309050 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 580393 9486842 ~ 9501240 (-)
G1515456 NA other downstream 595057 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 650694 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 680667 9391447 ~ 9402475 (-)
G1516062 LOC107575789 other upstream 92546 10210318 ~ 10210833 (-)
G1516107 NA other upstream 141053 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 735797 10853569 ~ 10856314 (-)
G1516757 NA other upstream 930633 11048405 ~ 11048928 (-)
G1516023 NA non-coding upstream 7273 10112613 ~ 10112839 (-)
G1516024 NA non-coding upstream 7595 10112935 ~ 10113220 (-)
G1516026 NA non-coding upstream 10664 10116004 ~ 10116747 (-)

Expression


Co-expression Network