LOC110497041 (LOC106574885)


Basic Information

Item Value
gene id LOC110497041
gene name LOC106574885
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10138344 ~ 10146845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951769.1
AATGGGCCGTTCTTGAGGGCGTTCCTTCCTAGTTGGCTTTGGCTGGAGTGGGAATCAGCTGTTAGCAGGCTAGCTTGTCGTCTCAAATCTGAGCATTATACATTTCTGTGTACGGTGAACGACCATACCTAGAACATTTGCTGAGACGAAGGAATTCGGCATATTCTCTGACTGCAATGCAGCGCAAGAATAGCTAGATCAAGTGGACCGGCATAAATAGCCAGTTAGCTGACGCCTGGATTAGCGTTAGCCGGGTGTAGGGCTAGCTAGCAAACTACGTCTGGTTTATGAAGACCAGATTTATGTTTTTTAACGTATCAGCTGTCTAGCAGCTTCAGCTAGGCTTTTTAAAACCGAGTAAAACGTGTTGCTATTAACGGTTAAACCGGTGTCCTAGCGTTGCCAGCCTTTGGATTAGTTTAGTGGTCAAGCCTGTATCTGGCCGACGTATCAATGCGCTACTCGCCATGCCTTTGCGCACACGCCCTGAACAAGACAGGGATTCAACTGTTCAGTTTGAattgtgtgttgtagatatgaaCCCCGATATGTGGCTGCTACTCATGTATTTAAAATTGAATGTGTCATTTTGAGACCAGACATCACTGACAGTCTGATGTTATAGACGAGTGGACGGTTCTTTCAGATATCTGGGGTGTAGTCAGTAGTAGGACTTTAGCAAATTGTTTAATCATGGGGGCTACAGTGTCATGCTGCATGTCCCCCGGCGGGAGTCCAAAGCTTGCAAGGAGAGCAGTCGAGCTCGACGACTACCCAATAACCACCACTGGCGACGACGTAAGCGAGGACACGGGCACCTATCTGCAGCACATCAGCGATAGAGAGGTCCCGGATGAATTGGCGCAGGAGTCGAACCCATCCGATAATGCCAGAGCCAGCACAATCTTCCTCAACAAGTCTCAGACTGATGTGCGGGAGAAAAGGAGAAGTAACTACTTAAGTAATCATCACACGTCTCCTGGGTTATCTAAAAAGTACAGCTCCTGCTCCACAATATTCCTTGACGATAGCACGGTCAGCCTGCCCAACCTGAAGAGTACGGTCAAATGtgtcACGTTGGCGATATACTATCACATAAAAAACAGGGATTCAAACCGTTCTCTGGACATTTTTGATGAGAAGATCCACCCATTAACGagAGAGAAGGTTCCAGAAGACTACTACAGCGTGGACCCTGAACACAAGCTCATCTACCGCTTTGTCCGCACGCTCTTCAGCTCGGCCCAGCTGACTGCTGAGTGTGCCATCGTCACCCTGGTGTACCTGGAGCGTCTGCTGACCTACGCTGAGATGGACATCTGTCCCTGCAACTGGAAGCGGATCGTACTGGGAGCCATCCTGCTGGCGTCCAAGGTGTGGGACGACCAGGCCGTGTGGAACGTAGACTACTGCCAGATCCTCAAGGACATCACCGTGGAGGACATGAATGAGATGGAGAGGCACTTCCTGGAGCTGCTTCAGTTCAACATCAACGTGCCGGCCAGCGTCTACGCCAAGTACTACTTTGACCTGCGCTCCCTGGCCGACGACAACAACCTCAACTTCCCCCTGGAGCCACTTGACAACCAGCGAGCCACTAAACTGGAGGCTATCTCCAGACTGTGTGAGGACAAATACAAGGATCTGGGCAAGGTGACCATAAGGAGGTCCCTCAGCGCAGACAATCTGGTGGGTGTCCGAACCACCCACGCCGTGCTGTCCTAAAGCTGGACCTGCTACACACACAGGACAGGCTGAGGATGCACCGAAGGTCTTCCTAAACTAGACACTCACTGGCACCATCGACACACACAGCTGGTCCCAAATCACGCCCAGATCTGTATGGTGGCAGCTCCACCACTGATACTTACTCATACACTCCAGATCTGCAAGAAGGGTTGGAGTGTCTGACACCACACACTGACCATGGTGAGGAAGCCTCTAACTACCCTGTGGTGTAGTTTGGCACACGGACAGATGGTGATGTAGGGTGGTTTTCTTTGCTTACTGTGTAGGCCCTTTAGCTGGGAAATGTATCGGTTTTTAATTGAACATATTTTCAGTTGCTGTTTATTTCAAATAAACCGTAATAAACTATCAAATCTG
>XR_005037367.1
GCGTCAAAATGGGCCGTTCTTGAGGGCGTTCCTTCCTAGTTGGCTTTGGCTGGAGTGGGAATCAGCTGTTAGCAGGCTAGCTTGTCGTCTCAAATCTGAGCATTATACATTTCTGTGTACGGTGAACGACCATACCTAGAACATTTGCTGAGACGAAGGAATTCGGCATATTCTCTGACTGCAATGCAGCGCAAGAATAGCTAGATCAAGTGGACCGGCATAAATAGCCAGTTAGCTGACGCCTGGATTAGCGTTAGCCGGGTGTAGGGCTAGCTAGCAAACTACGTCTGGTTTATGAAGACCAGATTTATGTTTTTTAACGTATCAGCTGTCTAGCAGCTTCAGCTAGGCTTTTTAAAACCGAGTAAAACGTGTTGCTATTAACGGTTAAACCGGTGTCCTAGCGTTGCCAGCCTTTGGATTAGTTTAGTGGTCAAGCCTGTATCTGGCCGACGTATCAATGCGCTACTCGCCATGCCTTTGCGCACACGCCCTGAACAAGACAGGGATTCAACTGTTCAGTTTGAattgtgtgttgtagatatgaaCCCCGATATGTGGCTGCTACTCATGTATTTAAAATTGAATGTGTCATTTTGAGACCAGACATCACTGACAGTCTGATGTTATAGACGAGTGGACGGTTCTTTCAGATATCTGGGGTGTAGTCAGTAGTAGGACTTTAGCAAATTGTTTAATCATGGGGGCTACAGTGTCATGCTGCATGTCCCCCGGCGGGAGTCCAAAGCTTGCAAGGAGAGCAGTCGAGCTCGACGACTACCCAATAACCACCACTGGCGACGACGTAAGCGAGGACACGGGCACCTATCTGCAGCACATCAGCGATAGAGAGGTCCCGGATGAATTGGCGCAGGAGTCGAACCCATCCGATAATGCCAGAGCCAGCACAATCTTCCTCAACAAGTCTCAGACTGATGTGCGGGAGAAAAGGAGAAGTAACTACTTAAGTAATCATCACACGTCTCCTGGGTTATCTAAAAAGTACAGCTCCTGCTCCACAATATTCCTTGACGATAGCACGGTCAGCCTGCCCAACCTGAAGAGTACGGTCAAATGtgtcACGTTGGCGATATACTATCACATAAAAAACAGGGATTCAAACCGTTCTCTGGACATTTTTGATGAGAAGATCCACCCATTAACGagAGAGAAGGTTCCAGAAGACTACTACAGCGTGGACCCTGAACACAAGCTCATCTACCGCTTTGTCCGCACGCTCTTCAGCTCGGCCCAGCTGACTGCTGAGTGTGCCATCGTCACCCTGGTGTACCTGGAGCGTCTGCTGACCTACGCTGAGATGGACATCTGTCCCTGCAACTGGAAGCGGATCGTACTGGGAGCCATCCTGCTGGCGTCCAAGGTGTGGGACGACCAGGCCGTGTGGAACGTAGACTACTGCCAGATCCTCAAGGACATCACCGTGGAGGACATGAATGAGATGGAGAGGCACTTCCTGGAGCTGCTTCAGTTCAACATCAACGTGCCGGCCAGCGTCTACGCCAAGTACTACTTTGACCTGCGCTCCCTGGCCGACGACAACAACCTCAACTTCCCCCTGGAGCCACTTGACAACCAGCGAGCCACTAAACTGGAGGTGAGGAGAGCTTCTAGGACGGCAGGAATGAAAACACTGCTACTTGGCAAGAGGGGAGTTTAATGGTTGTCCTGGTTGACTTGGTCCTGTTCAGAAACAACCCCAGCCCCTACTCCCCTACTATCATGTAGTTACTAAAAAATTGTTCCCAGGCTATCTCTGGGCTGTAATAAGTGTTGTTGCGTTCCCAGGCTATCTCCAGACTGTGTGAGGACAAATACAAGGATCTGGGCAAGGTGACCATAAGGAGGTCCCTCAGCGCAGACAATCTGGTGGGTGTCCGAACCACCCACGCCGTGCTGTCCTAAAGCTGGACCTGCTACACACACAGGACAGGCTGAGGATGCACCGAAGGTCTTCCTAAACTAGACACTCACTGGCACCATCGACACACACAGCTGGTCCCAAATCACGCCCAGATCTGTATGGTGGCAGCTCCACCACTGATACTTACTCATACACTCCAGATCTGCAAGAAGGGTTGGAGTGTCTGACACCACACACTGACCATGGTGAGGAAGCCTCTAACTACCCTGTGGTGTAGTTTGGCACACGGACAGATGGTGATGTAGGGTGGTTTTCTTTGCTTACTGTGTAGGCCCTTTAGCTGGGAAATGTATCGGTTTTTAATTGAACATATTTTCAGTTGCTGTTTATTTCAAATAAACCGTAATAAACTATCAAATCTG

Function

NR:

description
cyclin-Y-like protein 1 isoform X1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951769.1 False 2106 mRNA 0.50 10 10138344 10146838
XR_005037367.1 True 2304 mRNA 0.50 10 10138344 10146845

Neighbor

gene id symbol gene type direction distance location
LOC110497040 LOC106593457 coding downstream 20572 10074275 ~ 10117772 (-)
LOC110514354 LOC106575825 coding downstream 80925 10000040 ~ 10057419 (-)
LOC100653460 LOC106575875 coding downstream 237626 9893385 ~ 9900718 (-)
LOC110495582 LOC106574807 coding downstream 250150 9882795 ~ 9893229 (-)
LOC110495583 LOC106575874 coding downstream 258681 9878673 ~ 9879663 (-)
LOC110495586 LOC106574945 coding upstream 2166 10149011 ~ 10158506 (-)
LOC110516308 LOC105023143 coding upstream 28646 10174859 ~ 10229881 (-)
LOC110527275 LOC106590732 coding upstream 227926 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 1041947 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 1049252 11196097 ~ 11204430 (-)
G1516026 NA non-coding downstream 21597 10116004 ~ 10116747 (-)
G1516024 NA non-coding downstream 25124 10112935 ~ 10113220 (-)
G1516023 NA non-coding downstream 25505 10112613 ~ 10112839 (-)
G1515993 NA non-coding downstream 100406 10033422 ~ 10037938 (-)
G1516038 NA non-coding upstream 12324 10159169 ~ 10159388 (-)
G1516046 NA non-coding upstream 19259 10166104 ~ 10166492 (-)
G1516039 NA non-coding upstream 21181 10168026 ~ 10168977 (-)
G1516042 NA non-coding upstream 22444 10169289 ~ 10169803 (-)
G1515880 LOC102777708 other downstream 373119 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 644462 9486842 ~ 9501240 (-)
G1515456 NA other downstream 659126 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 714763 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 744736 9391447 ~ 9402475 (-)
G1516062 LOC107575789 other upstream 63473 10210318 ~ 10210833 (-)
G1516107 NA other upstream 111980 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 706724 10853569 ~ 10856314 (-)
G1516757 NA other upstream 901560 11048405 ~ 11048928 (-)

Expression


Co-expression Network