LOC110495586 (LOC106574945)


Basic Information

Item Value
gene id LOC110495586
gene name LOC106574945
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10149011 ~ 10158506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951770.1
GCCTACATTTCGTACACTTCCGCCAATGTTCGTCAATGTCGGTATTCTTCGTGTGGATTTCGTCATTTTCCGTTCGAATTCGAGCCCTGTCGATAGAACTGATTTTCGTCGTCTCCCTCGTTCTCCGTGTTGTTGTTCATCTCGGTGACGCGACAGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCGGAGGACCCGGGAGTGACGAAGCGAGTCTGTGTCGGGTAAGCATCCGATGCGGAGAGGGGGATAGAAGAAAGCCCTGGTGTGTTGGAGAAATCGCTCCAAATCTAACAAAGAGATCATGGCGGCGGTGTTGCAGAGCCACACGATGTTGAGTCAGTCTACaaagctagccagccagctatgTGAGAATGGCTCTCCAGAGTTCTCCACCCGCCATTCCAGCCAACTAAATGACCATGGAAGCGGGAGCCGATACACAGCAGGGTGGTGACACAGCTGTTTCTGAGTCTGAGGCCCAGCAGATCACACTTGCCCAGGTGTCTATGGCAGCAGGACAGGTCTCCTCCAGCGGCCCCACAGTCACCCTGGTGCAGCTGCCCAACGGTCAGACGGTTCAGGTCCACGGGGTCATCCAGGCCGCCCAGCCCTCGGTCATCCAGTCGCCTCAAGTACAGACTGTTCAGATTTCAACAGTTGCAGAGGACTCCCAGGACTCCCAGGAGTCGGTGGACAGTGTGACAGACTCTCAGAAGAGGAGGGAGATACTTTCCAGACGTCCTTCCTACAGGAAGATCCTGAACGACCTGTCGTCTGACGTGTCTGCGGTCCCGCCGATCGAGGAGGAGAAATCGGAGGACGACTCGACCCCCGCCATCACCACCGTTGCCATGCCCACATCATGCCCCATCTATCAGACGGCCAGCGGCCAGTACATTGCCATCACCCAGGGCGGCGCCATCCAACTGGCCAATAACGGTACGGATGGCATGCAGGGGATGCAGACCCTGACCATGACCAACGCGGCGGGCGCCCAGCAGGGCACCACCATCCTGCAGTATGCCCAGACCTCCGATGGACAGCAAATCCTGGTGCCCAGCAACCAGGTGGTAATGCAAGCTGCCTCTGGAGAAGTGCAGACCTACCAGATCCGTACGGCCAACACCAGCAGCATGACTCCTGGGATGGTGATGGCCTCCTCTCCCGCCTTGTCTGGCCAGGAAGGCCCAGAGGTTGTCGTCACCCGTAAGAGGGAGGTCAGACTGATGAAGAACAGggaagCGGCCCGGGAGTGTCGCCGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGTGTGGCCGTCCTGGAGAACCAAAACAAAACCCTCATTGAGGAACTGAAGTCACTTAAAGACTTGTACTGCCACAAATCAGagtagtgcccccccccccccatgtacaGAGACTCACCACAGAGCCATGCATCTGgcaccaccctccctcccccattTATCCCTTTCTTTTTAAAAAGCTCTACCAGTCTATAAGACCTACAGAAAGAggaaaaataacaacacaatttCTCCACTTTTTCAcaagtatccctttaaaaggaTGACATGAGTACCCCTAAAAAGGATGGCCTCATAGGTACCCCTTAAAAGGATGATGAGTACTTTCCATCATGAGTACCCCTAAAAGGATGAGGTGGAGCACACTGTTTCTCCACCAATAGAATGGAGCCCCTAGTGGAATCTTACAGTGGTAGGTATCGTGTCTATCCACGACACCACTGCTGCTAACTAACCAGTAGTCCCCAGTCTCAAGATGTCAGATACCAGGAAAACACCAGCCGTGGAGGACTAGGACCCCTCTGCCCACCATGAACTACCCTATACAACTATTGAGTTTGGACCGTCACCTGGCAACACACGTTGAAAATGATTTTGGAAAAATGGTCATCTTTTTGAGTGCTACACTATTCAGTATTTAGGCTGATGATTGCTTTAACTCTTCTGTTACTTACTAACACTTTATGTGGACTGTAGATCCCAACCACTGTCAGATGAAATGTATTATCTTTGAGCTTGAGTTGGGTTATCATGTATTGAATTTTTCTGCTTGCCAACTTTTGTTATTCAGCATTGCTAAGTCGGGTGTTTTGGGGTAGGAGATGGATTGTGGGTGGATTGTCTGCATCAACTAACAGGCATTAAAAGGTAACctcagcgatatgacgtagatgcagaatgtaaacagcatagtgggtcaatttccacaaCTAAGAGTGTTGAAGCGAGAAGCTCAACTCCGCTGTTTTGGTGCCGTGGCTACCACTACAACGTGAAGCGCTACTGTGTGATGGCAAAGTGttgcatctcgctcatctcaatatctccgGTGCTGCTCGGGGGGAAAGTCATTTCGCTGAGTACCTTTTTAAAGAGTTGTGCTAATGTAAACTGAGCTACCACACAGCTGACAGGAGGAATTGTGAAATATGACTGAAGGGTAGACTATGGGTGTTGTATAGTGTGCTTTTAGGCATTCATGTAATGTATACGATGtctgaggcagtgtgtgtgtttgagtctcCTTGTTTGTTTCTCCATGGCCTGAACAGGCATAAGGCATAATCATATTGGAGGATATCCTAACTTCCACTTAATCATGCATTGACATCAATGGGATTGTAGAGTGAAAGTTAGGATTAGCCCCACAATCTCACTTTTTCATCTGTTGTGCCTCAAAACACTTCTGATAGAACAAGGGAAGaagcatttttttttatcatgtaGTTCGTTAAAAGGGATAGTTTGCTTGGATCTGCAGTGATGACGTAGACCCATCGCTGACATTTAGACTGACAACTCGGTCAACAAACGTGGGATTTACACCAGGGGTGCGTTCAGCAGCTCACAACACTGTGGAACAGATCCAAATGTTCAGCTAGAACTGTTTTGTAGAACAGACATGCCTTTCTGACATGTAAAAGAAGGATTCATGTCAACTATATTTCTATCGGCAAAGTTCCAGAACATTTGCTTACTGAACCCGGTCTTCTGTTTGATTGGATAACGGAATGCCATATTGTATTATTTAGTTTTTACGTAGCCATCTGTCATAAATAACATATGCATCTTATTTTTAAAACACTTGCCATTTCTGTTCATATTTTGTAAACGTTGTATTTCTTAATGTCAGCATTCACTTGTATGAAAAAAGCAAAACAATTATATTACAGATTCTACTATTTGTTTTTGGCAGCTGTTAATAAATGTGTTTCTGGTA
>XM_036951771.1
GCCTACATTTCGTACACTTCCGCCAATGTTCGTCAATGTCGGTATTCTTCGTGTGGATTTCGTCATTTTCCGTTCGAATTCGAGCCCTGTCGATAGAACTGATTTTCGTCGTCTCCCTCGTTCTCCGTGTTGTTGTTCATCTCGGTGACGCGACAGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCGGAGGACCCGGGAGTGACGAAGCGAGTCTGTGTCGGGCTCTCCAGAGTTCTCCACCCGCCATTCCAGCCAACTAAATGACCATGGAAGCGGGAGCCGATACACAGCAGGGTGGTGACACAGCTGTTTCTGAGTCTGAGGCCCAGCAGATCACACTTGCCCAGGTGTCTATGGCAGCAGGACAGGTCTCCTCCAGCGGCCCCACAGTCACCCTGGTGCAGCTGCCCAACGGTCAGACGGTTCAGGTCCACGGGGTCATCCAGGCCGCCCAGCCCTCGGTCATCCAGTCGCCTCAAGTACAGACTGTTCAGATTTCAACAGTTGCAGAGGACTCCCAGGACTCCCAGGAGTCGGTGGACAGTGTGACAGACTCTCAGAAGAGGAGGGAGATACTTTCCAGACGTCCTTCCTACAGGAAGATCCTGAACGACCTGTCGTCTGACGTGTCTGCGGTCCCGCCGATCGAGGAGGAGAAATCGGAGGACGACTCGACCCCCGCCATCACCACCGTTGCCATGCCCACATCATGCCCCATCTATCAGACGGCCAGCGGCCAGTACATTGCCATCACCCAGGGCGGCGCCATCCAACTGGCCAATAACGGTACGGATGGCATGCAGGGGATGCAGACCCTGACCATGACCAACGCGGCGGGCGCCCAGCAGGGCACCACCATCCTGCAGTATGCCCAGACCTCCGATGGACAGCAAATCCTGGTGCCCAGCAACCAGGTGGTAATGCAAGCTGCCTCTGGAGAAGTGCAGACCTACCAGATCCGTACGGCCAACACCAGCAGCATGACTCCTGGGATGGTGATGGCCTCCTCTCCCGCCTTGTCTGGCCAGGAAGGCCCAGAGGTTGTCGTCACCCGTAAGAGGGAGGTCAGACTGATGAAGAACAGggaagCGGCCCGGGAGTGTCGCCGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGTGTGGCCGTCCTGGAGAACCAAAACAAAACCCTCATTGAGGAACTGAAGTCACTTAAAGACTTGTACTGCCACAAATCAGagtagtgcccccccccccccatgtacaGAGACTCACCACAGAGCCATGCATCTGgcaccaccctccctcccccattTATCCCTTTCTTTTTAAAAAGCTCTACCAGTCTATAAGACCTACAGAAAGAggaaaaataacaacacaatttCTCCACTTTTTCAcaagtatccctttaaaaggaTGACATGAGTACCCCTAAAAAGGATGGCCTCATAGGTACCCCTTAAAAGGATGATGAGTACTTTCCATCATGAGTACCCCTAAAAGGATGAGGTGGAGCACACTGTTTCTCCACCAATAGAATGGAGCCCCTAGTGGAATCTTACAGTGGTAGGTATCGTGTCTATCCACGACACCACTGCTGCTAACTAACCAGTAGTCCCCAGTCTCAAGATGTCAGATACCAGGAAAACACCAGCCGTGGAGGACTAGGACCCCTCTGCCCACCATGAACTACCCTATACAACTATTGAGTTTGGACCGTCACCTGGCAACACACGTTGAAAATGATTTTGGAAAAATGGTCATCTTTTTGAGTGCTACACTATTCAGTATTTAGGCTGATGATTGCTTTAACTCTTCTGTTACTTACTAACACTTTATGTGGACTGTAGATCCCAACCACTGTCAGATGAAATGTATTATCTTTGAGCTTGAGTTGGGTTATCATGTATTGAATTTTTCTGCTTGCCAACTTTTGTTATTCAGCATTGCTAAGTCGGGTGTTTTGGGGTAGGAGATGGATTGTGGGTGGATTGTCTGCATCAACTAACAGGCATTAAAAGGTAACctcagcgatatgacgtagatgcagaatgtaaacagcatagtgggtcaatttccacaaCTAAGAGTGTTGAAGCGAGAAGCTCAACTCCGCTGTTTTGGTGCCGTGGCTACCACTACAACGTGAAGCGCTACTGTGTGATGGCAAAGTGttgcatctcgctcatctcaatatctccgGTGCTGCTCGGGGGGAAAGTCATTTCGCTGAGTACCTTTTTAAAGAGTTGTGCTAATGTAAACTGAGCTACCACACAGCTGACAGGAGGAATTGTGAAATATGACTGAAGGGTAGACTATGGGTGTTGTATAGTGTGCTTTTAGGCATTCATGTAATGTATACGATGtctgaggcagtgtgtgtgtttgagtctcCTTGTTTGTTTCTCCATGGCCTGAACAGGCATAAGGCATAATCATATTGGAGGATATCCTAACTTCCACTTAATCATGCATTGACATCAATGGGATTGTAGAGTGAAAGTTAGGATTAGCCCCACAATCTCACTTTTTCATCTGTTGTGCCTCAAAACACTTCTGATAGAACAAGGGAAGaagcatttttttttatcatgtaGTTCGTTAAAAGGGATAGTTTGCTTGGATCTGCAGTGATGACGTAGACCCATCGCTGACATTTAGACTGACAACTCGGTCAACAAACGTGGGATTTACACCAGGGGTGCGTTCAGCAGCTCACAACACTGTGGAACAGATCCAAATGTTCAGCTAGAACTGTTTTGTAGAACAGACATGCCTTTCTGACATGTAAAAGAAGGATTCATGTCAACTATATTTCTATCGGCAAAGTTCCAGAACATTTGCTTACTGAACCCGGTCTTCTGTTTGATTGGATAACGGAATGCCATATTGTATTATTTAGTTTTTACGTAGCCATCTGTCATAAATAACATATGCATCTTATTTTTAAAACACTTGCCATTTCTGTTCATATTTTGTAAACGTTGTATTTCTTAATGTCAGCATTCACTTGTATGAAAAAAGCAAAACAATTATATTACAGATTCTACTATTTGTTTTTGGCAGCTGTTAATAAATGTGTTTCTGGTA
>XM_036951772.1
GGCCTACATTTCGTACACTTCCGCCAATGTTCGTCAATGTCGGTATTCTTCGTGTGGATTTCGTCATTTTCCGTTCGAATTCGAGCCCTGTCGATAGAACTGATTTTCGTCGTCTCCCTCGTTCTCCGTGTTGTTGTTCATCTCGGTGACGCGACAGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCGGAGGACCCGGGAGTGACGAAGCGAGTCTGTGTCGGGTAAGCATCCGATGCGGAGAGGGGGATAGAAGAAAGCCCTGGTGTGTTGGAGAAATCGCTCCAAATCTAACAAAGAGATCATGGCGGCGGTGTTGCAGAGCCACACGATGTTGAGTCAGTCTACaaagctagccagccagctatGCTCTCCAGAGTTCTCCACCCGCCATTCCAGCCAACTAAATGACCATGGAAGCGGGAGCCGATACACAGCAGGGTGGTGACACAGCTGTTTCTGAGTCTGAGGCCCAGCAGATCACACTTGCCCAGGTGTCTATGGCAGCAGGACAGGTCTCCTCCAGCGGCCCCACAGTCACCCTGGTGCAGCTGCCCAACGGTCAGACGGTTCAGGTCCACGGGGTCATCCAGGCCGCCCAGCCCTCGGTCATCCAGTCGCCTCAAGTACAGACTGTTCAGATTTCAACAGTTGCAGAGGACTCCCAGGACTCCCAGGAGTCGGTGGACAGTGTGACAGACTCTCAGAAGAGGAGGGAGATACTTTCCAGACGTCCTTCCTACAGGAAGATCCTGAACGACCTGTCGTCTGACGTGTCTGCGGTCCCGCCGATCGAGGAGGAGAAATCGGAGGACGACTCGACCCCCGCCATCACCACCGTTGCCATGCCCACATCATGCCCCATCTATCAGACGGCCAGCGGCCAGTACATTGCCATCACCCAGGGCGGCGCCATCCAACTGGCCAATAACGGTACGGATGGCATGCAGGGGATGCAGACCCTGACCATGACCAACGCGGCGGGCGCCCAGCAGGGCACCACCATCCTGCAGTATGCCCAGACCTCCGATGGACAGCAAATCCTGGTGCCCAGCAACCAGGTGGTAATGCAAGCTGCCTCTGGAGAAGTGCAGACCTACCAGATCCGTACGGCCAACACCAGCAGCATGACTCCTGGGATGGTGATGGCCTCCTCTCCCGCCTTGTCTGGCCAGGAAGGCCCAGAGGTTGTCGTCACCCGTAAGAGGGAGGTCAGACTGATGAAGAACAGggaagCGGCCCGGGAGTGTCGCCGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGTGTGGCCGTCCTGGAGAACCAAAACAAAACCCTCATTGAGGAACTGAAGTCACTTAAAGACTTGTACTGCCACAAATCAGagtagtgcccccccccccccatgtacaGAGACTCACCACAGAGCCATGCATCTGgcaccaccctccctcccccattTATCCCTTTCTTTTTAAAAAGCTCTACCAGTCTATAAGACCTACAGAAAGAggaaaaataacaacacaatttCTCCACTTTTTCAcaagtatccctttaaaaggaTGACATGAGTACCCCTAAAAAGGATGGCCTCATAGGTACCCCTTAAAAGGATGATGAGTACTTTCCATCATGAGTACCCCTAAAAGGATGAGGTGGAGCACACTGTTTCTCCACCAATAGAATGGAGCCCCTAGTGGAATCTTACAGTGGTAGGTATCGTGTCTATCCACGACACCACTGCTGCTAACTAACCAGTAGTCCCCAGTCTCAAGATGTCAGATACCAGGAAAACACCAGCCGTGGAGGACTAGGACCCCTCTGCCCACCATGAACTACCCTATACAACTATTGAGTTTGGACCGTCACCTGGCAACACACGTTGAAAATGATTTTGGAAAAATGGTCATCTTTTTGAGTGCTACACTATTCAGTATTTAGGCTGATGATTGCTTTAACTCTTCTGTTACTTACTAACACTTTATGTGGACTGTAGATCCCAACCACTGTCAGATGAAATGTATTATCTTTGAGCTTGAGTTGGGTTATCATGTATTGAATTTTTCTGCTTGCCAACTTTTGTTATTCAGCATTGCTAAGTCGGGTGTTTTGGGGTAGGAGATGGATTGTGGGTGGATTGTCTGCATCAACTAACAGGCATTAAAAGGTAACctcagcgatatgacgtagatgcagaatgtaaacagcatagtgggtcaatttccacaaCTAAGAGTGTTGAAGCGAGAAGCTCAACTCCGCTGTTTTGGTGCCGTGGCTACCACTACAACGTGAAGCGCTACTGTGTGATGGCAAAGTGttgcatctcgctcatctcaatatctccgGTGCTGCTCGGGGGGAAAGTCATTTCGCTGAGTACCTTTTTAAAGAGTTGTGCTAATGTAAACTGAGCTACCACACAGCTGACAGGAGGAATTGTGAAATATGACTGAAGGGTAGACTATGGGTGTTGTATAGTGTGCTTTTAGGCATTCATGTAATGTATACGATGtctgaggcagtgtgtgtgtttgagtctcCTTGTTTGTTTCTCCATGGCCTGAACAGGCATAAGGCATAATCATATTGGAGGATATCCTAACTTCCACTTAATCATGCATTGACATCAATGGGATTGTAGAGTGAAAGTTAGGATTAGCCCCACAATCTCACTTTTTCATCTGTTGTGCCTCAAAACACTTCTGATAGAACAAGGGAAGaagcatttttttttatcatgtaGTTCGTTAAAAGGGATAGTTTGCTTGGATCTGCAGTGATGACGTAGACCCATCGCTGACATTTAGACTGACAACTCGGTCAACAAACGTGGGATTTACACCAGGGGTGCGTTCAGCAGCTCACAACACTGTGGAACAGATCCAAATGTTCAGCTAGAACTGTTTTGTAGAACAGACATGCCTTTCTGACATGTAAAAGAAGGATTCATGTCAACTATATTTCTATCGGCAAAGTTCCAGAACATTTGCTTACTGAACCCGGTCTTCTGTTTGATTGGATAACGGAATGCCATATTGTATTATTTAGTTTTTACGTAGCCATCTGTCATAAATAACATATGCATCTTATTTTTAAAACACTTGCCATTTCTGTTCATATTTTGTAAACGTTGTATTTCTTAATGTCAGCATTCACTTGTATGAAAAAAGCAAAACAATTATATTACAGATTCTACTATTTGTTTTTGGCAGCTGTTAATAAATGTGTTTCTGGTA
>TU1735249
GTCGTCTCCCTCGTTCTCCGTGTTGTTGTTCATCTCGGTGACGCGACAGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCGGAGGACCCGGGAGTGACGAAGCGAGTCTGTGTCGGGTAAGCATCCGATGCGGAGAGGGGGATAGAAGAAAGCCCTGGTGTGTTGGAGAAATCGCTCCAAATCTAACAAAGAGATCATGGCGGCGGTGTTGCAGAGCCACACGATGTTGAGTCAGTCTACaaagctagccagccagctatgTGAGAATGGCTCTCCAGAGTTCTCCACCCGCCATTCCAGCCAACTAAATGACCATGGAAGCGGGAGCCGATACACAGCAGGGTGGTGACACAGCTGTTTCTGAGTCTGAGGCCCAGCAGATCA

Function

NR:

description
hypothetical protein EH28_17783

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951770.1 False 3258 mRNA 0.48 8 10149011 10158505
XM_036951771.1 False 3105 mRNA 0.48 8 10149011 10158505
XM_036951772.1 False 3250 mRNA 0.48 8 10149011 10158506
TU1735249 True 406 lncRNA 0.55 2 10156466 10158398

Neighbor

gene id symbol gene type direction distance location
LOC110497041 LOC106574885 coding downstream 2166 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 31239 10074275 ~ 10117772 (-)
LOC110514354 LOC106575825 coding downstream 91592 10000040 ~ 10057419 (-)
LOC100653460 LOC106575875 coding downstream 248293 9893385 ~ 9900718 (-)
LOC110495582 LOC106574807 coding downstream 260817 9882795 ~ 9893229 (-)
LOC110516308 LOC105023143 coding upstream 16985 10174859 ~ 10229881 (-)
LOC110527275 LOC106590732 coding upstream 216265 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 1030286 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 1037591 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 1052813 11211319 ~ 11212299 (-)
G1516026 NA non-coding downstream 32264 10116004 ~ 10116747 (-)
G1516024 NA non-coding downstream 35791 10112935 ~ 10113220 (-)
G1516023 NA non-coding downstream 36172 10112613 ~ 10112839 (-)
G1515993 NA non-coding downstream 111073 10033422 ~ 10037938 (-)
G1516038 NA non-coding upstream 663 10159169 ~ 10159388 (-)
G1516046 NA non-coding upstream 7598 10166104 ~ 10166492 (-)
G1516039 NA non-coding upstream 9520 10168026 ~ 10168977 (-)
G1516042 NA non-coding upstream 10783 10169289 ~ 10169803 (-)
G1516041 NA non-coding upstream 14610 10173116 ~ 10173729 (-)
G1515880 LOC102777708 other downstream 383786 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 655129 9486842 ~ 9501240 (-)
G1515456 NA other downstream 669793 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 725430 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 755403 9391447 ~ 9402475 (-)
G1516062 LOC107575789 other upstream 51812 10210318 ~ 10210833 (-)
G1516107 NA other upstream 100319 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 695063 10853569 ~ 10856314 (-)
G1516757 NA other upstream 889899 11048405 ~ 11048928 (-)

Expression


Co-expression Network