LOC100505417 (LOC100505417)


Basic Information

Item Value
gene id LOC100505417
gene name LOC100505417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11305247 ~ 11307037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001197213.1
AGTCACTATAGCAGACTGCAAtagaagaagagacagacagagaaagagccaCACCACCTAAGACAAAGCGCCTAGGCCACCTACTCTGAACTTTAAGGACTTATACCTTGTGAGAACAGAGAAACACATCTATCCAGACATGGATATCCAGACCGGCCAGGTGACGCACCAGCCCAGCCCCAGGGAGAGCCTGGAGAGCCAGCTGAGCTGCCCCATCTGCCTGGAGATGTTCCAGAAGCCCGTAGTCATCCTGCCCTGCCAACACAACCTGTGCCGCGGCTGCGCCAGCGACCTCTACGACTCCCGCAACCCTTACCACTACTCCGGGGGCATCTTCCGCTGCCCCACCTGCCGCTTCGAGGTCGTCCTGGACCGCCACGGCGTCTACGGCCTGCAGAGGAACCTGCTAGTGGAGAACATCATTGATATCTACAAGCAGCAGCCGGAGAGCGGCGGCGGAGAAGTAGGAAGTAACGCTGCAGACCCTCCGCTGAAGGACAAAGACACCAAGGAGCCCATGTGTACGGAGCACGAGGACGAGCGCATCAATATTTACTGTGTGACCTGCCAGACGCCCACCTGCTCCATGTGCAAAGTGTTCGGCCAGCACAAGGACTGTGAGGTGTCACCCCTGCAGAGCATCTACGATACCCAGAAGGCCGAGCTGCGGAACGCCATAGATCTCCTTGCGGCGGGTAACAGCTGTGTCCAGGCCGTGATGGCTCAGATGGAGGACACATGCAAGAGCATCGAGGAGAACAGCCAGCTTCAGAAGAGACGTCTGGGGGAGAGCTTTGACTTGCTCTATGCCATCCTGGAGGAACGTAAGGGCCAGCTCCTGGAAAAGATCacccaggaggaggagaggaagctgGGGTTGCTGAGGTCCCTGGTGGAGAGGTACACGGAGCAGCTCCAGGCTAGTATCAACCTAAAGGAGAAGGCGGCCCAGACCATGGAGAAGGGCAATGCAGCCGAGTTCCTGATTAGTGGGAAGGAGCTAATCGCACAGGCCAAAGAGGCAGCTAAAGGCTCCAACTTAGAGAGGCCCGAGCCTGGCTTCGAGAACATGGAGCACCTTACACTGTGCACAGAAGACGTGGAGGTCATCTTGTACCAAATGGGCTTTGGACtgggggatgatgatgatgatgatgtggtgacagaggaagaagaaggggaggaggaagaagaagaggaggaagaagaggaggaatagTAAAACTCTAACTCAAGACTGTATTAGAAGTACTGTATTATTGCagttgaggagaggtttggactAAGAGATAAGGATTGGTTTGATGAACAAGCTGCTTTTTAGAAAGAGTAACTAGTTATTTATCAACTAGTTATAACTAGGATATTCACTGTGGTGAATACACAATTTAGAGCCAAGGTGGAAAGTGCAATTCTGAAAAGTAGTTTTTTTTCACTAACAAAATGCAACATTTTGTTTAGACTTGTTCTTTTTTTGATACTTTTGTATTTCTACGTTTATACGGTACTGTTTTTTGATATCTACTGAAATAGATATCTCATGGAAATAACAAAGTTTACACTTGAACTCTTTTCACATAATGTACATTGCTCAAGTCTAGACtagattgaaaaaaaaaaacgaaaaataTAGCAAAGCATTATTCATGTTGTGTATAATATATCGTTGTCTGTCAAACTATTGAAAACttgaattgctgcaaaatgcACTTAATTCACTTGGTGTTGTTTTTTAACACagctgtaatttttgtaatgtaATTGACAGTTTAAAGAAATAAAGTGTTGTGG

Function

NR:

description
muscle RING finger 1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001197213.1 True 1791 mRNA 0.48 1 11305247 11307037

Neighbor

gene id symbol gene type direction distance location
LOC110495612 LOC106574782 coding downstream 6230 11274895 ~ 11299017 (-)
LOC110495607 LOC106592309 coding downstream 33229 11219019 ~ 11272018 (-)
LOC110527288 LOC106574778 coding downstream 92948 11211319 ~ 11212299 (-)
LOC110495606 LOC106575688 coding downstream 100817 11196097 ~ 11204430 (-)
LOC118941093 NA coding downstream 110474 11185131 ~ 11194773 (-)
LOC118941094 ackr3 coding upstream 48640 11355677 ~ 11363249 (-)
LOC110528752 agap1 coding upstream 156435 11463472 ~ 11746107 (-)
trnaa-ugc-134 NA coding upstream 262618 11569655 ~ 11569726 (-)
LOC110495629 LOC106574809 coding upstream 439624 11746661 ~ 11748608 (-)
LOC110497052 LOC106574838 coding upstream 473902 11780939 ~ 11791230 (-)
G1516857 NA non-coding downstream 1145 11303815 ~ 11304102 (-)
G1516833 NA non-coding downstream 65650 11238935 ~ 11239597 (-)
G1516832 NA non-coding downstream 87827 11217195 ~ 11217420 (-)
G1516829 NA non-coding downstream 92213 11212664 ~ 11213034 (-)
G1516887 NA non-coding upstream 19182 11326219 ~ 11327380 (-)
G1516897 NA non-coding upstream 32571 11339608 ~ 11339920 (-)
G1516898 NA non-coding upstream 32997 11340034 ~ 11340247 (-)
G1516902 NA non-coding upstream 35780 11342817 ~ 11343050 (-)
G1516909 NA non-coding upstream 43527 11350564 ~ 11351093 (-)
G1516784 unc80 other downstream 130764 11167621 ~ 11174483 (-)
G1516771 LOC106575823 other downstream 212803 11089229 ~ 11092444 (-)
G1516757 NA other downstream 256319 11048405 ~ 11048928 (-)
G1516562 LOC106575810 other downstream 448933 10853569 ~ 10856314 (-)
G1516107 NA other downstream 1045255 10258825 ~ 10260556 (-)
LOC110527304 LOC106575687 other upstream 632093 11926474 ~ 11972660 (-)
G1517784 NA other upstream 640528 11947565 ~ 11948345 (-)
G1517822 LOC106575686 other upstream 713735 12020772 ~ 12023228 (-)
LOC110512633 LOC106575771 other upstream 933197 12240234 ~ 12245743 (-)

Expression


Co-expression Network