LOC110495615 (LOC106574963)


Basic Information

Item Value
gene id LOC110495615
gene name LOC106574963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11749729 ~ 11759288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951409.1
TCACATAGCATTTCCTCGGGTAACTCGATGCGCTGGAAGGGGGAAGGCAGAAGATCCCTCCTTGCCGACAACGCATTGAGACTTCCAGAAATCTCTCCTTCTGAAGACGTTAGAAAGAGGAAAATGGCCTCTAAAGTTACAATCGATGGAGTAAGTTTTGTATAGACAGAATATATGGAACCGTTACGTGTAGCCGCCTAGTAAGCAGAGGTTGCACTGTCTACATTAACATAGAAAATGAAATGTATGTCATTTCAGCTGCAGAAACGGAGAAAGGAGGCATTGGACGACTGCCACAATATTTCTTATCATCGGGGAGTTATTTTTTTGTCGCCAGAATGGAATGGTAAATGGTGCATTTTCATGTAAACTTTCAGCAGGATTATAGCACACAAGTTGACAAGTGTTTGTGTTTACTTTATTGAAACAGCCCAGACTGTGCATTTGTCTTTCTGAACAGTTACGTCATAACCTACTGCGGAACTCTTTTCTTCTTCTCAAACAAAGCGTTTTTATGGACAATCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGGCTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGGCTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCAGTCATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCTTCTTATACCCATTGTAGGTTTTTCTTTGACACTGCAGAAATGAAACAGACACtgcatctctgtgtgttatggctgttgCTGGTATGGAGCACAGGGGCCTCTGACAGGAGACCCCTCAAAAGGACAATCTTACGACGAACATCCCTCCAGGGGGGGATTTTTAACAGAACACAAAATGTGCTGAACTCTGACAGTATTGCTCCTTCCGCTGGTGGTATAAATGTATCCACTGTGACGAGCCATCGTGACAGAATGCAGAGAGATGAGAAAGCTGAGCCTCCAAGGAGAAGGATGATGCCAAGCAGAAGAATACCCCAACAACCAAAGAAACCCATAAACCAGGTTGGCAGTGGCACATCTCAAGACAACAGTAAACAAGTGACAGGGGAGGCGGTTCAGCCTCAGTCCACACCAGCCCGCACCGTCCCCGGCAGCGCAGGCTCCCTCAACGTCCTGGCCAGCTTCGCAGGGAAGAACCGGGTCCTGGTCATCTCCGCCCCACATGACTCAGACGGTTACTATCGCCTGATGATGACCCTCCTCAAGTCGGACGTCTACTGCCAGATGGCGGAGCGGCACATGCAGATGATAGTGATGTTCCAccaggagggagagcgaggcggGAAGGTGCGGCGGGTCAACGCCAAGGGACAGGTGACGGAGGAGCCCCTGGACACGGTCCTCATCCCCAGGCTGATGAACTTCCTGAAGCTGGAGGAGGGGAAGTTTGGCATGGTTCTCCTGAGGAAGACTCTCCAGGTGGAGGAGAGGTACCCGTACCCGGTCAGGCTGGAGGCTATGTACGAGGTGATGGACCAGACCCACATGCGCAAGCTGGAGAAGGCCAGGCAGAGGGGCTTCGTGCAGAGGTGCAAGGCGGCCGGTGTTGAGGGCCAGGTGGTTGAGTCTCAGGGCCAGGGGGTATTGACCACGGGGTCAGAGGTCACAGTGAACTCTACAGTGGAGAGGGTGCCAGTGAGGAAAGGGGTGCAGAGACCAGCTCAAGGACCAAAGGCTGTGACAGTTACCACAACCCGACCAACCACAAAACCAACTATGACCACAAAGGCAACCACAATTACAACAAAGccaaccacaaccaccacaacaaaaccaacaagaacaaaaaaaaaaaaaactacaaccacaacaaaaccaccaccaacaacaaaagcaaccacaaccaccaccagaaAAACAACCACGACCACAACAaaaccaccaccaacaacaaaagCAACCACAACCATAACTACAGCAAAGccaaccacaaccaccaccagaaAAACAACCACGACCACAACAAAACCAACAACTACTACAACGACCACAAAAGTAACCACCACAACAAAACCAACAACCACAACAAAAACAACCACGACCACCACCACTATAAAACCAACCACCACAACAAAACCAAAAACTACAACAACACGAcgaaccacaaccaccacaacaccCACTGTTCCGAAGCCCTTGGACCCCCAGACAACACCGCACTGGGACCTAGAGGTCCCCACCACAGACAAATCCTTCTACATCCTCTCAGAGACCCACAAAAATGGCATAGATGACGTTACAGAGTCCCACAGAGACCAATATGAAGAAGACACAACCGACGATACCAAACATGGCCGACAAGTTGTTACCTCTCCAACTCAGCTCACTAACGACAAACCAACTGAAGGAGGGGAAGAGCTGGGCAGTGAACTTAAGGTTGACTCTGATGCACAGGTGGAAACAGCTTCCCCCAAGAAGAGTAAGGTCAAGCGGCCTGTCAATGCAGAGAGGAAGAAAAAGGCTGATAAATCAGGCAAAAAGAGTAAAACAGACAAGAAAAGGTTGAAGGCTACTAAAGACAGTGATGGAGGCTTCTATCGTGGCAGGAGACCAGGGAAGAAGGCCGCTATTAACCAGGAGAAAGAAGCAGACAACAAGAGGCCCCCCACAAAACAGCCAAACCTCTTAGTATCCTTTTTTGGTCATTTTGAGAAGAGACGACGTCTACTTGTGATCAGTACTCCAGACGAGGAGAATCCTATGTACACGCAGCAGAGagatgagtatctggagcatgtgTGTGAATTGGGCGTCAGAAAAATCTCTCTTATCACCATCTTTGGCTCTCTGACCAATGGCACCATGAAGATGGACCATTACCAGGCTGAGAAGGATCAGCCTCTGAAAGGCATGAAAGAAGAGGACTTCACAAACCAGCCCCTCATCAGAGCCTTGAGGAATGAGTTGGGACTGATATTTGACGACTACTATATGGTGCTGACTGACTTTGATATGAAAGTGAAGCAAGAATATGAGGTGCCCATCGCCATGACGGCTGTGTTTGACTACATAGACACATTCTCTTCTCGCATCAAGGAGATGGAACAGCAGAAGAGACAAGGAGTGGCGTGTAAGAAGGAAGACAAATCCAAATCTCTGGAGAACTTCCTCTCACGGTTCCGCTGGAGACGCAGGCTGTTTGTGATCTCCTCCTCTGACGACGAGGAATGGGCCTATCAGCAGCAGCTCTACGCCCTGACTAGCCAGGCCTGCAATCTGGGCCTGCGCCACTTGTCTGTGCTGAAGCTGATTGGAAAGGACATGGAGGATATGGGCGGGACCCTTGAGCTATACCCAATCAACGGGACTGCCACTGTGGAACGTGAGGAcgtttctccctctctggtgCAGGACATCAGGAACTACTTCCAGATCAGCCCAGAGTACTTCTCTATGCTGCTGGTGGGGAAAGACGGCAACGTCAAGTCCTGGTACCCGTCTCCCATGTGGTCCATGTCCATCATATATGACCTGGTTGACTCCATGCAGCTCCGCAGACAGGAGATGGCTATCCAGCAGTCCCTTGGCATGCGCTGTCCTGAGGATGAGTATGGGGGCTACGGTCATGACAGAGACCCGGATGGTTACCACCGTGGATATGGTTACTAAAGGATTGAGAATAGGATGTTCCCCTTAGGATGTGTTCGATTTTCTATTGAGGCCTGGTTGTGGCCTTCTCCCATGAACTATATGAAGCCATTGTATGAATGGCATTTCATGAAagctttttttttgcattttgatAACTGTGACGTTGTTTTATAAGAATGGACTTTTCTAAAATAGATTATGAAAATGTAGCATACTTTTTCTTCCATATATTTTTGAATGTGATTTGTTTCACAGGGAGAATGGAGATTTCAGATTAAAAACATTTGGCAATTGCCTTTTATGTTGTGCATATATTTGTTATCTTGTATGGAGATATACCGGTAACTgcccaaataaaggaaacacttgagtg

Function

NR:

description
coiled-coil domain-containing protein 80-like isoform X1

GO:      GO:0005578

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951409.1 True 4201 mRNA 0.48 8 11749729 11759288

Neighbor

gene id symbol gene type direction distance location
LOC110528750 LOC106575767 coding upstream 292850 11453014 ~ 11456879 (+)
LOC110495609 LOC106590510 coding upstream 328826 11362611 ~ 11420903 (+)
LOC110527285 LOC106574778 coding upstream 534732 11213513 ~ 11214997 (+)
LOC110514120 NA coding upstream 560445 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 659100 10978682 ~ 11092554 (+)
LOC110495622 LOC106575786 coding downstream 7075 11766363 ~ 11772739 (+)
LOC110495619 slc19a2 coding downstream 13826 11773114 ~ 11779870 (+)
LOC118941042 LOC105005823 coding downstream 32313 11791601 ~ 11802738 (+)
LOC110495630 LOC106575789 coding downstream 43889 11803177 ~ 11808380 (+)
trnas-cga-32 NA coding downstream 49621 11808909 ~ 11808990 (+)
G1517014 NA non-coding upstream 97450 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 124451 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 140886 11608248 ~ 11608843 (+)
G1516999 NA non-coding upstream 152024 11597292 ~ 11597705 (+)
G1516998 NA non-coding upstream 154718 11594662 ~ 11595011 (+)
G1517065 rgn non-coding downstream 58067 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 78056 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 79239 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 102084 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 180774 11940062 ~ 11941897 (+)
G1517019 NA other upstream 105971 11642789 ~ 11643758 (+)
G1517015 NA other upstream 114750 11633067 ~ 11634979 (+)
G1516637 NA other upstream 732640 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1422591 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1074363 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1175366 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1178235 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1427813 13187101 ~ 13188080 (+)

Expression


Co-expression Network