LOC110538825 (eef1b2)


Basic Information

Item Value
gene id LOC110538825
gene name eef1b2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12065999 ~ 12068727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625804.2
TGGTATAAAATCCTCCTCGTGTTCCTTCCTCGTTCTTTCGCTCTTCCTGCACTGCACGTTTTGTCTCGTCTCAGAAGCATCTTGAACAATGGGCTTTGGCGACCTGAAAACCCCTGGCGGCCTCAAGGTCCTCAACGACTTTTTAGCCGACAAGAGCTACATCGAGGGGTGGGTGCCCTCCCAGGCCGACGTGGCTGTGTTCGATGCAATCCCCTCAGCCCCCTCAACAGTCCAGTGCCATGCTCTTCGCTGGTACAACCACATCAAGTCATTCCAGAACCAGAAGGGCAGTTTGCCAGGAGTTAAGAAGCCCCTGGGCCAGTATGGTCCTTCCGGTGTGGAGGACAACACAGCTGCAGACTCAAAGGATGACGACGATGACATGGACCTGTTTGGCTCTGATGACGAGGAGGATGCAGAGGCAGAAaggctgaaggaggagagaatcgCAGCCTATGCCGCCAAGAAGTCAAAGAAGCCCACACTCATCGCCAAGTCATCGATCCTGCTTGATGTGAAACCGTGGGATGATGAGACGGACATGGCCAAGCTGGAGGAGTGTGTTCGCAGCATCTCAATGGACGGCCTGCTTTGGGGACAGTCCAAGCTGGTACCAGTGGGCTATGGCATCAAGAAGCTGCAGATCGGGTGTGTGGTAGAGGACGACAAGGTGGGAACAGACCAGCTGGAGGAACAGATTACAGCCTTTGAGGACTATGTCCAGTCTATGGATGTGGCTGCCTTCAACAAGATCTAAAACTCAAAACACTTACCAACAAAGACACTGAGCACTTTGGAGTTGTAATAAAAAGCACTTCAGATGGAAAATGTTTGTTACATATTCTGACAAGTGGTTCTGCCTGGTTTATGTAGCTTTTGAGTAAAGACTTGGGTGTTTGGGTTAAA

Function

symbol description
eef1b2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within translation. Predicted to be part of eukaryotic translation elongation factor 1 complex. Predicted to be active in cytosol. Orthologous to human EEF1B2 (eukaryotic translation elongation factor 1 beta 2).

NR:

description
elongation factor 1-beta-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03232 EEF1B; elongation factor 1-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625804.2 True 906 mRNA 0.51 6 12065999 12068727

Neighbor

gene id symbol gene type direction distance location
LOC110518257 LOC106575719 coding downstream 362 12060272 ~ 12065637 (-)
LOC110527249 LOC106574815 coding downstream 16172 12046027 ~ 12049827 (-)
LOC110527304 LOC106575687 coding downstream 93339 11926474 ~ 11972660 (-)
pjvk dfnb59 coding downstream 167225 11877113 ~ 11898774 (-)
LOC118941096 LOC106575679 coding downstream 197129 11862917 ~ 11868870 (-)
LOC118941098 LOC106574821 coding upstream 14126 12082853 ~ 12085584 (-)
LOC110539058 LOC106575691 coding upstream 17381 12086108 ~ 12092145 (-)
LOC110527242 LOC106593029 coding upstream 110339 12179066 ~ 12181071 (-)
LOC118941032 LOC106575777 coding upstream 161544 12230271 ~ 12237346 (-)
LOC110512633 LOC106575771 coding upstream 172821 12240234 ~ 12245743 (-)
G1517793 NA non-coding downstream 22622 12043026 ~ 12043377 (-)
G1517822 LOC106575686 non-coding downstream 42771 12020772 ~ 12023228 (-)
G1517807 NA non-coding downstream 70853 11994038 ~ 11995146 (-)
G1517796 NA non-coding downstream 86727 11975921 ~ 11979272 (-)
G1517840 NA non-coding upstream 19955 12088682 ~ 12088909 (-)
G1517842 NA non-coding upstream 36838 12105565 ~ 12161226 (-)
G1517848 NA non-coding upstream 43738 12112465 ~ 12113094 (-)
G1517867 LOC106575792 non-coding upstream 86905 12155632 ~ 12156305 (-)
G1517885 NA non-coding upstream 152127 12220854 ~ 12221191 (-)
G1517784 NA other downstream 117654 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 320086 11463472 ~ 11746107 (-)
G1516784 unc80 other downstream 891516 11167621 ~ 11174483 (-)
LOC110495544 LOC106575695 other upstream 192065 12260777 ~ 12272188 (-)
G1517902 NA other upstream 216351 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 515001 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 837484 12898791 ~ 12910954 (-)

Expression


Co-expression Network