LOC118941098 (LOC106574821)


Basic Information

Item Value
gene id LOC118941098
gene name LOC106574821
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12082853 ~ 12085584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951877.1
ATTTTGTTCAAGCTGGGCTGAAGCGTGTTTTGGTACACTTTCTTTCAACGTGTGATACATTGTTTGATCATGATGTTGCAAATTGTTTAGCTACACTGTGCTCTGCTGAACGTCACTCTAGGTCAAGTATAGATAAGGTGTAACCTACTGAACACTGGTGAGAAAAGAAGATGATAGACGTGTTCAAACCAATAGACAAGATGTTCGTTGGTTGCGTCAGGAAAAGTTATGCTATTCGGTTGGATTTACGTTTTTAGGGCGGGTTTAGTTTTCGGATACGGAAGAGGAAGGAGCTATGTTTTGAAAGCATTGTCAGAAGTTTAGAAAGTTACGAAAAAGGGACTTGTTGAAATAACTTTACATGACATTATTTACATAGGGCAGTGATACTATTAAAATACATCCTAATTCTATTTTAACAACGTGCGTGTCACTAATTGAAGGAAGGCAGTTTGGGAGAGGAAACTAACTTCGCTACGTTGATATCTAGCGTGTGCTTGCTTTGACAACTAGTTCAACGTTTTTGAGTTGTATTACTTTACTTTTACCAAGATGGACATACAACACCGGCAGCGTCCGGTCAAACTGGACCAGAGTTTTTGGGACAACCGAAGACTGTGGACCGCAAGGATTTTCTCCATGCTCTGCTGTGCAATGGTGATGTCGGTCGTTGCAGTATTCTGCGCCTTTGTTTACCTCATCTTGAAAGaGATGCAGAATGAGAGAGTGATTGGAGAGGATGGCTCAGAGGTTAGACTCCTAGgGTTCTGGAGTGTTCTGGTCATGTCGGTGCTAGCAGGGTTCTGCTGCTGTAGCTTCACATGGACCATCACCTACTTTGACTCTTTTGAGCCCGGCACGTTCCCCCCAACCCCCCTGTCCCCTGGCCACCTCAGgcaGGTGACAGGTCACTCCTTCCACATGAGCTACAGTGTGGCGGTCCTAAATGGCATTGTAGCGGCGATCACCATCATCTGGAGCCTTACCTGACcttacccacaaccccctgttCTACCTGACcttacccacaaccccctgttCTACCTGACcttacccacaaccccctgttCTACCTGACcttacccacaaccccctgttCTACCTGATCTTATCCACAACCCCCTGTTCTACCTGACcttacccacaaccccctgttCTACCTGACcttacccacaaccccctgttTTACCTGACcttacccacaaccccctgttCTACCTGACCTTACCCACAACCCCCTGCTCTGACCCACAACCCTCTCACCTTACCCAGAACCCCTTGTTCTACCTGACTTTACACACAATCTTTCCCATGTGTAAGTGTACATATCAAGAGAAGCAGTAGAACATGATGTGATACTATGAGACAATGTGTCCAGTACTAAAGTCAGCATCTCACTCACTAGCTCCTTGTCATTTGGTTCTCCATGCTGTCCTCTTCTTGGCCAAGTCCCAGGCTGATGAAGTGTTGAGTCCCAGGTTTCTACAAAGTCAGGATACCTTttttaatgtactgtatattgtgttaTATCTAGCCTAAAGAGGTTTTGTGCCACATTAGTGCTATAAAGAGAACATTTAAAATATTAAATGAGGCTCACacattctaactctatagtttaTTGTAAGTCTAATATATAACCTGTAGAGGTATGTTCCATGCAGTGTATCTGTGCATTTGACTGTTATTCTCACTGAACCACTGAATGATGCTTTCACTGTACCACTGAATGATGCTTTCACTGTCTCTCCTTCCCACACTGTCTGTACTACTGAACAGTAAAGAAGCTCTCACCTGCC

Function

NR:

description
ADP-ribosylation factor-like protein 6-interacting protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951877.1 True 1799 mRNA 0.45 5 12082853 12085584

Neighbor

gene id symbol gene type direction distance location
LOC110538825 eef1b2 coding downstream 14126 12065999 ~ 12068727 (-)
LOC110518257 LOC106575719 coding downstream 17216 12060272 ~ 12065637 (-)
LOC110527249 LOC106574815 coding downstream 33026 12046027 ~ 12049827 (-)
LOC110527304 LOC106575687 coding downstream 110193 11926474 ~ 11972660 (-)
pjvk dfnb59 coding downstream 184079 11877113 ~ 11898774 (-)
LOC110539058 LOC106575691 coding upstream 524 12086108 ~ 12092145 (-)
LOC110527242 LOC106593029 coding upstream 93482 12179066 ~ 12181071 (-)
LOC118941032 LOC106575777 coding upstream 144687 12230271 ~ 12237346 (-)
LOC110512633 LOC106575771 coding upstream 155964 12240234 ~ 12245743 (-)
LOC118941062 NA coding upstream 160295 12245879 ~ 12250456 (-)
G1517793 NA non-coding downstream 39476 12043026 ~ 12043377 (-)
G1517822 LOC106575686 non-coding downstream 59625 12020772 ~ 12023228 (-)
G1517807 NA non-coding downstream 87707 11994038 ~ 11995146 (-)
G1517796 NA non-coding downstream 103581 11975921 ~ 11979272 (-)
G1517840 NA non-coding upstream 3098 12088682 ~ 12088909 (-)
G1517842 NA non-coding upstream 19981 12105565 ~ 12161226 (-)
G1517848 NA non-coding upstream 26881 12112465 ~ 12113094 (-)
G1517867 LOC106575792 non-coding upstream 70048 12155632 ~ 12156305 (-)
G1517885 NA non-coding upstream 135270 12220854 ~ 12221191 (-)
G1517784 NA other downstream 134508 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 336940 11463472 ~ 11746107 (-)
G1516784 unc80 other downstream 908370 11167621 ~ 11174483 (-)
LOC110495544 LOC106575695 other upstream 175208 12260777 ~ 12272188 (-)
G1517902 NA other upstream 199494 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 498144 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 820627 12898791 ~ 12910954 (-)

Expression


Co-expression Network