LOC110539058 (LOC106575691)


Basic Information

Item Value
gene id LOC110539058
gene name LOC106575691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12086108 ~ 12092145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951876.1
agggtgtgacagtttcgacatgaagatcactgacgtcgtcatgattcaaccttttttTTCAATTACCGTCTGTTACGCGGGAATCACAAACTGATACAAAATAACCGGCGCATCACCTGCTACTGTTCTTCCCGCTTTCACAGCGTTTACGTCGTCTGATCAAGCGCAGAGAACTGCACCGTCTTTTACAGGTGTTTTTGTTGCCTCTGGTTCCCATTCTGGGTTTAGAATGTCTCACACAGGTAAAACAGTGGTCATCCCTCCAGAGCTCCCCGGCATTCTGAAGCAGTTCACCAAGGACGCCATCCGGACACAACCTGAAGACCTGCTGGAATGGGCCACACTGTACTTCAGTGCTCTGGTCCAGGGGAAGACGTTACCTGTGAACAGGACACCAGACAAAGTGGTAACCCCCAACACCATGGACCTCACACCTGAGCTACATAAGAATGGCACAGTCAGTAAGAAGGAGGTGAGCAAGCTGTGGCGGTCGTTAGGATTGGCTGACGACCTTCTCAGACACATCATGACAGTGGGCTGCTTCGGAGACCAACTCGACTGGATAAAATTCTTCGCCCTGTGCTGCAGCTATCTGGGAGGGACGATCAAGAACGCCATGACCCACGCGCTGTACATCCTGAACTCAGACAGCTCGTGTAAGCCCCCAGACGCCTGCGTCCCCTTCGAGACCTTCCGCTTCCTTTACTCCTACCTGGCAGCGGTGGACAAAGAGGTGTCCCAGGCCCAGATAGACCGAACCATTACCTACTTGGAGGCTCAGGCgaaGGCGCGTGATGGGATGGTGAAGGTGTCGGACTTCGTCAACAGTCGTAAAGTGCGTTTGGGATAGACTCTTTCCCCTTTAGAACTTTAGAACTTTAGAACTGTTCTAATAAAGATGGTTCCAAAGAAAAACTCTGTTATTGCAGAGGACAGTGTTCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTAGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATATCCTCCATCAATATCAGAGGACAGTGTTTGTGTATTACATGAAATGAAAAGTCAATCATGAAAAGTCATCACTGATTGAGGCTGC
>XM_036951874.1
cagtttcgacatgaagatcactgacgtcgtcatgattcaaccttttttTTCAATTACCGTCTGTTACGCGGGAATCACAAACTGATACAAAATAACCGGCGCATCACCTGCTACTGTTCTTCCCGCTTTCACAGCGTTTACGTCGTCTGATCAAGCGCAGAGAACTGCACCGTCTTTTACAGGTGTTTTTGTTGCCTCTGGTTCCCATTCTGGGTTTAGAATGTCTCACACAGGTAAAACAGTGGTCATCCCTCCAGAGCTCCCCGGCATTCTGAAGCAGTTCACCAAGGACGCCATCCGGACACAACCTGAAGACCTGCTGGAATGGGCCACACTGTACTTCAGTGCTCTGGTCCAGGGGAAGACGTTACCTGTGAACAGGACACCAGACAAAGTGGTAACCCCCAACACCATGGACCTCACACCTGAGGTACTCACCACAATGCACGAAAAGCTACATAAGAATGGCACAGTCAGTAAGAAGGAGGTGAGCAAGCTGTGGCGGTCGTTAGGATTGGCTGACGACCTTCTCAGACACATCATGACAGTGGGCTGCTTCGGAGACCAACTCGACTGGATAAAATTCTTCGCCCTGTGCTGCAGCTATCTGGGAGGGACGATCAAGAACGCCATGACCCACGCGCTGTACATCCTGAACTCAGACAGCTCGTGTAAGCCCCCAGACGCCTGCGTCCCCTTCGAGACCTTCCGCTTCCTTTACTCCTACCTGGCAGCGGTGGACAAAGAGGTGTCCCAGGCCCAGATAGACCGAACCATTACCTACTTGGAGGCTCAGGCgaaGGCGCGTGATGGGATGGTGAAGGTGTCGGACTTCGTCAACAGTCGTAAAGTGCGTTTGGGATAGACTCTTTCCCCTTTAGAACTTTA
>XM_036951875.1
gacagtttcgacatgaagatcactgacgtcgtcatgattcaaccttttttTTCAATTACCGTCTGTTACGCGGGAATCACAAACTGATACAAAATAACCGGCGCATCACCTGCTACTGTTCTTCCCGCTTTCACAGCGTTTACGTCGTCTGATCAAGCGCAGAGAACTGCACCGTCTTTTACAGAATGTCTCACACAGGTAAAACAGTGGTCATCCCTCCAGAGCTCCCCGGCATTCTGAAGCAGTTCACCAAGGACGCCATCCGGACACAACCTGAAGACCTGCTGGAATGGGCCACACTGTACTTCAGTGCTCTGGTCCAGGGGAAGACGTTACCTGTGAACAGGACACCAGACAAAGTGGTAACCCCCAACACCATGGACCTCACACCTGAGGTACTCACCACAATGCACGAAAAGCTACATAAGAATGGCACAGTCAGTAAGAAGGAGGTGAGCAAGCTGTGGCGGTCGTTAGGATTGGCTGACGACCTTCTCAGACACATCATGACAGTGGGCTGCTTCGGAGACCAACTCGACTGGATAAAATTCTTCGCCCTGTGCTGCAGCTATCTGGGAGGGACGATCAAGAACGCCATGACCCACGCGCTGTACATCCTGAACTCAGACAGCTCGTGTAAGCCCCCAGACGCCTGCGTCCCCTTCGAGACCTTCCGCTTCCTTTACTCCTACCTGGCAGCGGTGGACAAAGAGGTGTCCCAGGCCCAGATAGACCGAACCATTACCTACTTGGAGGCTCAGGCgaaGGCGCGTGATGGGATGGTGAAGGTGTCGGACTTCGTCAACAGTCGTAAAGTGCGTTTGGGATAGACTCTTTCCCCTTTAGAACTTTA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0007286 spermatid development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951876.1 False 1492 mRNA 0.46 6 12086108 12092145
XM_036951874.1 False 888 mRNA 0.52 6 12086727 12092136
XM_036951875.1 True 853 mRNA 0.52 6 12086727 12092138

Neighbor

gene id symbol gene type direction distance location
LOC118941098 LOC106574821 coding downstream 524 12082853 ~ 12085584 (-)
LOC110538825 eef1b2 coding downstream 17381 12065999 ~ 12068727 (-)
LOC110518257 LOC106575719 coding downstream 20471 12060272 ~ 12065637 (-)
LOC110527249 LOC106574815 coding downstream 36281 12046027 ~ 12049827 (-)
LOC110527304 LOC106575687 coding downstream 113448 11926474 ~ 11972660 (-)
LOC110527242 LOC106593029 coding upstream 86921 12179066 ~ 12181071 (-)
LOC118941032 LOC106575777 coding upstream 138126 12230271 ~ 12237346 (-)
LOC110512633 LOC106575771 coding upstream 149403 12240234 ~ 12245743 (-)
LOC118941062 NA coding upstream 153734 12245879 ~ 12250456 (-)
LOC118936562 LOC106594175 coding upstream 158211 12250356 ~ 12252549 (-)
G1517793 NA non-coding downstream 42731 12043026 ~ 12043377 (-)
G1517822 LOC106575686 non-coding downstream 62880 12020772 ~ 12023228 (-)
G1517807 NA non-coding downstream 90962 11994038 ~ 11995146 (-)
G1517796 NA non-coding downstream 106836 11975921 ~ 11979272 (-)
G1517842 NA non-coding upstream 13420 12105565 ~ 12161226 (-)
G1517848 NA non-coding upstream 20320 12112465 ~ 12113094 (-)
G1517867 LOC106575792 non-coding upstream 63487 12155632 ~ 12156305 (-)
G1517885 NA non-coding upstream 128709 12220854 ~ 12221191 (-)
G1517889 NA non-coding upstream 135710 12227855 ~ 12228657 (-)
G1517784 NA other downstream 137763 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 340195 11463472 ~ 11746107 (-)
G1516784 unc80 other downstream 911625 11167621 ~ 11174483 (-)
LOC110495544 LOC106575695 other upstream 168647 12260777 ~ 12272188 (-)
G1517902 NA other upstream 192933 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 491583 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 814066 12898791 ~ 12910954 (-)

Expression


Co-expression Network