LOC118941032 (LOC106575777)


Basic Information

Item Value
gene id LOC118941032
gene name LOC106575777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12230271 ~ 12237346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951352.1
TTGTGCTCGGCACCAGTGTCGCATTGATTTTCAACTGCAGTTCAGAATCCTCATGGCTAAAACACCCACATGGGAATTCATTTGTTCTGTTTCAATTTAACCGAATTTAACGACGTTTTTTTCCCCATCACCTGCTGAGTGAGATATTTGTAAGATATTTGTTTTACCTAATTTTAAACATTCTTTGGAGAAAACATCAGTCTTATTTGAGAGGTAGCCTTTAACCTCGTTGAGGTCCCCAAATGAAGGTTGAGGGTTTAGCTGAAGGCAGGGCTGGGGGTAACCCCTGCCCTGGTCCTGCCAGCCAGTGCTGTATCTCGCGACTGCTAAGCGTGGTGGAGAGCGAGTTGCAAGCGGGGCGCGAGAAGGGGGACCCCACCGAGAAGCAGCTGAAGGTGACGCTCGAGGAAGCGGAACTGTGGCGGAAGTTTAAGGAAGTCACCAATGAGATGATAGTCACCAAGAGCGGCAGGAGGATGTTTCCGGTGCTGAAAGTGAGTGTATCGGGTCTGGACCCCAACGCCATGTACTCCTTCCTGCTGGACTTCCAGCCAGCTGACAGCCACCGCTGGAAGTACGTTAACGGGGAGTGGGTTACAGCCGGTAAACCGGAGCCTGCCGGTAATGGTTGTGTGTACATCCATCCCGACTCACCCAACTTCGGAGCCCACTGGATGAAGGCACCTGTCTCCTTCAGCAAGGTCAAACTCACCAACAAGCTCAACGGAGGTGGACAGatCATGTTGAACTCTCTCCATAAGTATGAACCTCAGCTCCACATTGTGAGAGTGGGCGGAAGCCACCGAATGGTCACTAACGTCTCTTTCAGCGACACACAGTTCATCGCTGTCACTGCCTACCAGAATGAAGAGATCACCGCTCTGAAGATCAAATACAACCCGTTCGCTAAGGCTTTCCTGGATGCCAAAGAGAGGAACCACCCGAACAGTCCATTGGAGTCCCCATTTGACAGCCATATGGGAATTCAACACTGTGGCTGGTTTCTGTCTAACCCAGACTCGCTGTGTTCAGGTGGGGGTCCTAGCTTCCCCTATAGCGGGGGTCTGCCTCTCGCCCCCCCTCATGGGTACAAGCACTACCCCCCCAGGCCAGCTCCCTACCCCCCCTCCTACCTGCCGCACCGCACGCACCCTTCTGtctctctgtctgagggGCTACAGGTGTTGTCTGGGGGTCCTGATGGCTGGTCTAGTGTCTCCTCCCCCGGcccctcctcctcagccctaCCCATGACCACACCCTCCTCACCCCCGTCCACCAATAGCAGCAGTCAGTACCCTTGTTTGTGGACGGTCGGGCGTACAGACGGGAGTCCTGCCTCTTCTCCCTGCGCCCAGCTTCATGGACCAATCAACAGCGAGAGCCACCCACAGCCACCCAATCACGTCCGGCTGGGCGGGCCCGGTTGGCCACCTGTCTCCAGCCATTCCTTCTAACAAACTATATGATTGGTCGATGCCCACATGGGCATGATCAGTACTGCCCTGCGACCCGGCCCTGGAAGCCCTTTAATGAACACATCTTAGATAATAggtgttcctctgcccaggcgttGCCAGATGTTACATCTTCTGGAAAGGTATTTtaagtatcagctaaccacatcatatttCATAGCAACCTGATGCCCAGTCGATGACGTGGCACAGAACCACTGGTTGATGaatgcaacgtctgagcaggggaaggCGACcaacgtgtgtgtgcatgtgatgcCATACaaatgtgttagtgtgtgtgcacCTCAAAAAACGAAGGCccagattcaatcagatcaagcgttaactGGCAATAGCAGACACCTGCATAGCGGATGTTTTGGCTTTGCTGGAGGTGGAACtgcgttggagctgtcaaatcggcgagcagctgctcttgcgatcattgtcacgaagccacactGTCCCGCTGGCGTTAGAAGTTCAGAAGGAGAAAGTGGAGGCTGTATAGAAATAATGACCCTCACATTGAAAAACATTCAACCAAATAGTTTCTATCAtcataatggaggtgtagatcacatctcacattccactgttctgacttagaaacaaggctgcatgggatttctgttCATGCCactccgtgcagccaatggcaatgtccactttaggtataatgccaggagccgcttgtggatttgacagcttctAACGCAGTCCTACCTCCGGCACCTCCGAAACGACCGCTGTGCGGATGTTGGACAAAGTGGATCTGATTGAATCAAGCCCTAAATGTCTCTGCCTGCTTTCAAATGACTTATCATTCTATGTTTGTGGTTCAGCCCTGACAGACTAactctgggccctgacagactaactctgggccctgacagactaACTCTGGGCCCTGGTAATAATATATGTCAAACTGCCAATATGCAGGAGTCAGAATAAATATCTATGTGAAACTACAGTACAGAAAAATATGTATTATGTCTCTGTCTTCATTCTGTCAGCTTTATGATAATGTTTCTGTCTGATAAATGCTGTTCATTGTAAAACGCTGAAAATAAACATTGGCCA

Function

NR:

description
PREDICTED: T-box transcription factor TBX19-like

GO: NA

KEGG:

id description
K10184 TBX19; T-box protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951352.1 True 2546 mRNA 0.51 8 12230271 12237346

Neighbor

gene id symbol gene type direction distance location
LOC110527242 LOC106593029 coding downstream 49200 12179066 ~ 12181071 (-)
LOC110539058 LOC106575691 coding downstream 138126 12086108 ~ 12092145 (-)
LOC118941098 LOC106574821 coding downstream 144687 12082853 ~ 12085584 (-)
LOC110538825 eef1b2 coding downstream 161544 12065999 ~ 12068727 (-)
LOC110518257 LOC106575719 coding downstream 164634 12060272 ~ 12065637 (-)
LOC110512633 LOC106575771 coding upstream 4202 12240234 ~ 12245743 (-)
LOC118941062 NA coding upstream 8533 12245879 ~ 12250456 (-)
LOC118936562 LOC106594175 coding upstream 13010 12250356 ~ 12252549 (-)
LOC110495544 LOC106575695 coding upstream 23431 12260777 ~ 12272188 (-)
ck073 ck073 coding upstream 44285 12281631 ~ 12288102 (-)
G1517889 NA non-coding downstream 1614 12227855 ~ 12228657 (-)
G1517885 NA non-coding downstream 9080 12220854 ~ 12221191 (-)
G1517842 NA non-coding downstream 69045 12105565 ~ 12161226 (-)
G1517867 LOC106575792 non-coding downstream 73966 12155632 ~ 12156305 (-)
G1517848 NA non-coding downstream 117177 12112465 ~ 12113094 (-)
G1517899 eed non-coding upstream 37868 12275214 ~ 12278588 (-)
G1517905 NA non-coding upstream 57166 12294512 ~ 12294796 (-)
G1517907 NA non-coding upstream 59963 12297309 ~ 12297775 (-)
G1517918 NA non-coding upstream 71713 12309059 ~ 12309613 (-)
G1517919 NA non-coding upstream 72607 12309953 ~ 12310249 (-)
G1517822 LOC106575686 other downstream 207831 12020772 ~ 12023228 (-)
LOC110527304 LOC106575687 other downstream 257951 11926474 ~ 11972660 (-)
G1517784 NA other downstream 281926 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 484358 11463472 ~ 11746107 (-)
G1516784 unc80 other downstream 1055788 11167621 ~ 11174483 (-)
G1517902 NA other upstream 47732 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 346382 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 668865 12898791 ~ 12910954 (-)

Expression


Co-expression Network