LOC118941062


Basic Information

Item Value
gene id LOC118941062
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12245879 ~ 12250456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951411.1
atgtatttctctctctcgtttaaGTTCATTGTGATCATCACCCACTCCATTACTCTATTACCCCTCTATTCATCCCCCCACTCCATTACTGTTACCCCTCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTCTATTCATCCCCACTCCATTACTGTTACCCCTCTATTCATCCCCCCACTCCATTACTCTGTTACCCCATTCACCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCACTCCATTACTCTGTTACCCCTATTCACCCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTATTCACCCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTATTCATCCCCCCACTCCGTTACTGTTACCCCTCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTATTCATCCCCCCACTCCGTTACTCTGTTACCCCTCTAATCATCCCCCATTCCGTTACTCTGTTACCCCTATTCATCCCCCCACTCCGTTACTCGGTTATCTCTATATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCCACTCTGTTACGGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCTACTCCGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCTACTCGGTTACTCCTCTATTTATCCCCCCACTCCATTACTCGGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCTACTCGGTTACTCCTCTATTTATCCCCCCACTCGGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTTATCCCCCCACTCCGTTACTCGGTTACTCCTCTATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCCACTCCATTACTCCTCTATTCATCCCCCTACTCCGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCCACTCCGTTACTCCTCTATTCATCCCCCTACTCGGTTACTCCTCTATTTATCCCCCCACTCCGTTACTCCGTTACTCCTCTATTCATCCCCCTACTCGGTTACTCCTCTATTTATCCCCCCACTCCGTTACTCGGTTACTCCTCTATTTATCCCCCCACTCCATTACTCCTCTATTCATCCCCCTACTCGGTTACTCCTCTATTTATCCCCCCACTCCGTTACTCCGTTACTCCTCTATTCATCCCCCTACTCCGTTACCCTTCTTTGTCCACCTCTCTGCCACCTTTCTATTCGCCCTTTCTTCATTGGTCTCCccattctccttctctctacccaaATTAATCCACAAAAACATATTGTTTTTGTGGATTCAATTCTATATCCCAGCCCTCTGTACCAATCCAGCCCTCTGTCCCAATCCAGCCCTCTGTCCCAGCCCTCTGTCCCAATCCAGCCCTCTGTCCCAGCCCTGCCTCAACCCAGTCCTCTGTTCCAGCCCTCTGTCCCAGCCCTGCCCCAATCCAGCCCTCTGTCCCAGCCCTGCCTCAACCCAGCTGTGCCTCAACCTAGCCCTCTGTCCCAGCCCTCTGTCCCAGCCCTGCCTCAACCCAGCCCTGCCCCAACCCAGCCCATAGTCCCAGCCCTGCCTCAACCAAGCCGTGCCTCAACCCAGCCCTCTGTCCCAGCCCCGCCACAACCCAGCCCTCTGTCCCAGCACTGCCTCAATACAACCCTCTGACCCAGCCCTGCCTCAACACAACCCTCTGACCCAGCCCTGCCTCAACACAACCCTCTGACCCAGCCCTGCCTCAACACAACCCTCTGGCCCAGCCTCTATTCTACTTCAGCcctcctccagtactccctggATCCTGAGTGAGCCTCCACTCCCCCCTTCCCCTCATGGCAGGTATCATGGACCCTGAGGATACAATTGTAACAGAACCCAAGGATGAGGATATCTAACCTGAGGATAGAATCGGAACAGAACTGGAGGATAGAATTCTAATGGAACCTGAGGATAGAATCGGAACAGAACTGGAGGATAGAATTCTAATGGAACCTGAGGATAGAATCGGAACAGAACTGGAGGATAGAATTCTATTGGAACCTGAGGATAGAATCAGAACAGAACTGGAGGATAGAATTCTAATGGTACCTGAGGATAGAATCAGAACAGAACTGGAGGATAGTGTTAATTTATCCAGAAGGTTCTGATGCTGAGGAGCCAGATGGGATTCTCTTTGAGCCAGAGGAGCAACAAGAGGgagatgaggatgatgaggaggataACATCTTTGCCACATGGATGGGCCGCTACAAGAAAGCAGCAGAACAGGAGGACAAGGATAAAGAGGTGGAGAAAAGAGGCAgtgatagaggagaggaagaacagCTTCGAACGACAAGCTCCACCACGGGCAGACCGGCGGCAATCACTACCCTGTCCAtgtATATAGGAGTGGCTGTGGGGGAAGCAGGTGTGTTGTGTGCAGGTGGTGCTCTTGCCAGAACCACTCTACTGGAGCTCCACTTGGGTTAAAGTACCCTGAGAACTACGTAGAACAGCCTAGAACTGGACAGAACCACTTAGAACTGGACCCAACCTCTCACAACTGCATATAGTTGGAAAGAACTGCCTAGACAGAACTACACCTACCTGGAAGAACTACCCAGAACTGACGAGAACCGGTGAAGAACTGCCTAGTGTTGTAATGAACCTTGCAGAACTGCCTAGTGTTGTAATGAACCTTGCAGAACTGCCTAGCGTTGTAATGAACCTTGCAGAACTGCTTAGATACCAACATcacttatttttatttgacctttatttaactaggcaagtccgttgagaacaaattcttattttcaatgacggcctaagaacagtggccTAGGAACACTAACTGCCTGTTCTGAATCTAGAGTGCTGTGCTGAGAGAGAGACCTCTGTATTCCCCCAAATCCCAATAATCCAGTATCTTTTAATATTGTTTGTGTGATAGTGTATGAGTGAAATGTATGGATGTTTTTCCAAAGGTTTTACTTATAAGAATCGATTCAACATGTTTATTTCAAGATGTTGTTTGTTTAGTCAAATAAGGgcatttacatttttacattgtatCCCATCTACGTCTTTGTTTTCCTCTAGTCATCCCCTAGTCATTGAATAAAACACTTGGTTGTTCTAATTGTAAAATGT

Function

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951411.1 True 3540 mRNA 0.50 3 12245879 12250456

Neighbor

gene id symbol gene type direction distance location
LOC110512633 LOC106575771 coding downstream 213 12240234 ~ 12245743 (-)
LOC118941032 LOC106575777 coding downstream 8533 12230271 ~ 12237346 (-)
LOC110527242 LOC106593029 coding downstream 64808 12179066 ~ 12181071 (-)
LOC110539058 LOC106575691 coding downstream 153734 12086108 ~ 12092145 (-)
LOC118941098 LOC106574821 coding downstream 160295 12082853 ~ 12085584 (-)
LOC110495544 LOC106575695 coding upstream 10321 12260777 ~ 12272188 (-)
ck073 ck073 coding upstream 31175 12281631 ~ 12288102 (-)
LOC110497022 LOC106574871 coding upstream 80478 12330934 ~ 12342330 (-)
LOC110516060 LOC106575774 coding upstream 103596 12354052 ~ 12380993 (-)
LOC110528732 LOC105019714 coding upstream 219628 12470084 ~ 12506726 (-)
G1517889 NA non-coding downstream 17222 12227855 ~ 12228657 (-)
G1517885 NA non-coding downstream 24688 12220854 ~ 12221191 (-)
G1517842 NA non-coding downstream 84653 12105565 ~ 12161226 (-)
G1517899 eed non-coding upstream 24758 12275214 ~ 12278588 (-)
G1517905 NA non-coding upstream 44056 12294512 ~ 12294796 (-)
G1517907 NA non-coding upstream 46853 12297309 ~ 12297775 (-)
G1517918 NA non-coding upstream 58603 12309059 ~ 12309613 (-)
G1517919 NA non-coding upstream 59497 12309953 ~ 12310249 (-)
G1517822 LOC106575686 other downstream 223439 12020772 ~ 12023228 (-)
LOC110527304 LOC106575687 other downstream 273559 11926474 ~ 11972660 (-)
G1517784 NA other downstream 297534 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 499966 11463472 ~ 11746107 (-)
G1517902 NA other upstream 34622 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 333272 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 655755 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 721197 12933662 ~ 13031321 (-)

Expression


Co-expression Network