LOC118936562 (LOC106594175)



Basic Information


Item Value
gene id LOC118936562
gene name LOC106594175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12250356 ~ 12252549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036951366.1
TACGCTTTTGTTGATCCTCCCGCTTATTTCGCAACGCCCACTTTCAGACACGCTCAATGTATGCAGTTACCCATGACTCCTAGCAGGCAAACTTGGTGCATAGGCCACAGCACCACCCGAGTGATACTGCCAAGCAAACTGTGACTACATGGTATTTGGTGAGACGATCCTATCAGATATTGTCCACCACACCACCAGCGGGAGAGCCTTACCTGGGACAACACATCAGAATCCTAGAATCTCCCCCTTCACTTTGGGCCAAAAGTGGTCCTCCTTTTGACCGAATCATCAAAACATTCCTTTCAAGTGCTACAGGAGGATACTCCAGAGACAATGGCTGATATTGAGAGGGACAATCAACACACAGATATACTGCAGGTGCAAATAAAACAGGAGGACGGAGAAGAGCCTCACGATACAGAGGACCGTCTCAAGAGTTCTAATACCGGAGAACAGAAGCCTTGTCACATCTGCCCTGATTGTGGTAAAAGTTATACCCGTTCGGATAATCTTAAAACACACCAGAAAATTCATATGACAGAGAGGCCGTACCTCTGCTCTGAGTGTGGTAAAGGTTTTACCCGCACAGATCATCTGAAATCACACCTGAAAACACAtgaaagaaagaagaagaaacttaAACACCCCTGTACTGATTGTGTGAAAGGCTTTGTCCATTTGGAGCAGCTTGAAAAACATCTGGAAAAAAATCACCTTACACACAAGGAAAAGAAACCTCACGGCTGTCCAAGGTGTGATGAGAGCTTTTCTGACCTGGAAGAACTAACAACACACTTGCCAGTACATACTGAAGAGCTGGCCCTCTACTGCTCTGACTGCGGTAAGCGGTTCTTACACAAAGGAAAATTTGAAAGAcaccagagagtacacagtggacAAATGCCATACATATGCACCCACTGTGGGGAGGGTTTTACACAGGCACATAGTTTGAAACATCACCAgcgaatacacactggagagaaaccctacCTCTGCAACGAGTGTGGGGAGAGTTTCAGACACGATGCAACGTACAGGAGACACAAGCGCAAACACGAGCTACCACTCTCTGAAAAGAAAGCCTATCCTTGCTCAGTATGTGGGAAGACTTTTACCCGCTCCGATGGAGTGATGAGGCATTTGAGGAGGTTCCATTACGGAGAGCGAGCTCTCCAGTGCTCCTGCtgcgacaaacgtttctttcaacAGGACACACTAACCACACACATGagaattcacactggagagaaaccgtacagttgctctgactgtgggagaaGTTTCTCACAAGATGGCGACCGAAAGAAACACCAGAAGAGGCACCACACTGGAGAGGGCACTTCACCTCTGACCCTCCATGTGGACGGCACagggacgcgcacacacacactataacagagacatacacactaacagacagtaacaggcaGACTCAAGACACAAAAACAGGCCAGTGGGTAAACCAGGTTGCAATGAAGTTATTCTGACAGCTTTGGCTTTattttttgtgtttgtgtgtgataacatgtatttctctctctcgtttaaGTTCATTGGCAAGGCTAATTTTAGCCCAACTTCTCACTGTTTGTAAGATGCTTACTGCTCATTGCAGCTACTTAAGTG

Function


NR:

description
gastrula zinc finger protein XlCGF8.2DB-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036951366.1 True 1629 mRNA 0.46 2 12250356 12252549

Neighbor


gene id symbol gene type direction distance location
LOC110512633 LOC106575771 coding downstream 4690 12240234 ~ 12245743 (-)
LOC118941032 LOC106575777 coding downstream 13010 12230271 ~ 12237346 (-)
LOC110527242 LOC106593029 coding downstream 69285 12179066 ~ 12181071 (-)
LOC110539058 LOC106575691 coding downstream 158211 12086108 ~ 12092145 (-)
LOC118941098 LOC106574821 coding downstream 164772 12082853 ~ 12085584 (-)
LOC110495544 LOC106575695 coding upstream 8228 12260777 ~ 12272188 (-)
ck073 ck073 coding upstream 29082 12281631 ~ 12288102 (-)
LOC110497022 LOC106574871 coding upstream 78385 12330934 ~ 12342330 (-)
LOC110516060 LOC106575774 coding upstream 101503 12354052 ~ 12380993 (-)
LOC110528732 LOC105019714 coding upstream 217535 12470084 ~ 12506726 (-)
G1517889 NA non-coding downstream 21699 12227855 ~ 12228657 (-)
G1517885 NA non-coding downstream 29165 12220854 ~ 12221191 (-)
G1517842 NA non-coding downstream 89130 12105565 ~ 12161226 (-)
G1517899 eed non-coding upstream 22665 12275214 ~ 12278588 (-)
G1517905 NA non-coding upstream 41963 12294512 ~ 12294796 (-)
G1517907 NA non-coding upstream 44760 12297309 ~ 12297775 (-)
G1517918 NA non-coding upstream 56510 12309059 ~ 12309613 (-)
G1517919 NA non-coding upstream 57404 12309953 ~ 12310249 (-)
G1517822 LOC106575686 other downstream 227916 12020772 ~ 12023228 (-)
LOC110527304 LOC106575687 other downstream 278036 11926474 ~ 11972660 (-)
G1517784 NA other downstream 302011 11947565 ~ 11948345 (-)
LOC110528752 agap1 other downstream 504443 11463472 ~ 11746107 (-)
G1517902 NA other upstream 32529 12285078 ~ 12285632 (-)
G1518019 LOC106575703 other upstream 331179 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 653662 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 719104 12933662 ~ 13031321 (-)

Expression



Co-expression Network