LOC110497022 (LOC106574871)


Basic Information

Item Value
gene id LOC110497022
gene name LOC106574871
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12330934 ~ 12342330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951309.1
TTTTTATACACGGAAATGACTACTGTCAACATGCCGACACATGTGTGGCATGCTTGAAATAAATGAATGTAGTCTTTCTGTGATGTTTATGATAATTTAAATAATAACAAATATAGAGAACAACTACCAACATGAAGTTTGCTTACAGGTTTTCCAATTTGTTGGGAGCTGTGTATCGTCGTGGGAATCTGAGTTTCTCCAAGGATGGCAACTCTGTGATAAGTCCGGTGGGAAACCGCATCTCCGTCTTTGATCTAAAAAACAACAAGTCAGAGACACTGCCAGTGTCCACTGCCAAGAACATCACCTGTGTCGGCCTCTCCCCCGATGGGAACCTGGCTATACTGGTGGATGAAGATGGAGCAGCGTTGCTGATCAGCCTGATCACAAGGGCTGTTCTCCATCACTTCCACTTCCACAAACCTGTGGCCAGTATCCGCTTCTCTCCTGATGGCAGGAAGTTTGTGGTAACCAAGGAGAATGTAGCGTTGATGTACCACGCTCCCGGGAGGAACCGGGAGTTCAATGCCTTTGTCTTGGACAAGAGCTACTACGGACCCTACGATGAGACCACCTGCATCGACTGGACCGACGACTCCAAGTGCTTTGTGGTGGGCAGCAAAGACATGTCTACCTGGGTGTTTGGAGCCGAGCGCTGGTCCAACCTCATCTACTACTCTCTGGGGGGACACAAGGACATCATGGTGGGCTGCTTCTTCGAGAAGGACAGTTTAGATTTGTACACAGTGAGCCAGGATGGGAcgctgtgtgtgtgggagagtgatACGGAGCTGGACGGGCTGGTTCTGAGAAAGACCAGGCTaccagcagagagaggagaggagaaggagagaggagaaggagaggaggaagagcccAGAGGAGAGGTGATCAGAGGGAAAGGAGAAAGACCCAAGGAGAAGGAGGGAACCAAGAACGTCAGATACAAACAGAGGAGCAAACACTTCTTTAACAAGGAGGGTGACTTCAACAACCTGACGGCTGCAGCGTTCCACAAGCCCACACACATCCTGGTGACTGGGTTCGCCTCGGGGATCTTCCATCTCCACGAACTGCCCGAGTTCAACCTCATCCACTCCCTAAGTATCTCAGACCAGAGGATCGCCACAGTGTCAATGAACAGCTCTGGCGACTGGATAGGCTTTGGCTGCTCAGGTCTGGGCCAGCTGCTGGTGTGGGAGTGGCAGAGTGAATCCTACGTGTTCAAACAGCAGGGACACTTCAACAACATGGCCGCCCTGGCTTACTCCCCCGACGGACAGTACATCGCTACAGGAGGGGATGATGGGAAAGTGAAAGTGTGGAACATGACCAGCGGCTTGTGCTTCGTCACGTTCACAGaacacaccagctctgtcactaATGTCACCTTCACCTCCAGAGGCTTTGTCATCGTCAGCGCCTCCCTGGATGGAACGGTCCGAGCCTTCGACCTGCACAGGTACCGTAACTTCCGTACGTTCACGTCTCCGCGGCCGGCCCAGTTCTCGTCTCTGGCGGTGGACCCGAGCGGGGACCTGGTGAGCGCTGGGGCCCAGGACTCCTTCGAGGTCTTCATCTGGTCCATGCAAACTGGACGCCTGCTAGAGGTCCTGGGGGGCCACGAGGGCCCGGTGAGCTGTCTGTGTTTCAGCCCGGTGCAGTCCATCCTGGCCAGTGCATCATGGGACAAGACGGTCCGCCTCTGGGACATGATGGACAGCTGGCAGACCAAAGAGACGCTCCGTCTCACCTCTGATGGCCTGGCGGTGTCGTACCGGCCGGATGGTCAGGAGCTGGCCGTGGCCACGCTGGACGGAGAGATCTCCTTCTGGAGCCcccagtcagccaatcagacagGCTCGATCAGCGGACGCCACGACCTGAAGATGGGACGCAAGGAGACCGAGAAGATCACCTCCAAACAGTCTGCCAAGGGCAAGTCCTTCACATCGCTGTGCTACTCTGCAGACGGGGAGTCCATCCTGGCTGGAGGCCAGTCCAAGTTTGTCTGCATCTACAACATCAGAGAACAGATCCTCATGAAGAAGTTTGAGATCTCCTGCAACCTGTCCCTGGACGCCATGGAGGAGTTCTTGGACCGGAGGAAAATGACAGAGTTTGGGAGTCTGGCGCTGGTGGATGAGGGGGTGGGCGATGGGGACGGGGTAGAGCTCAGTCTGCCAGGGGTTAGGAAAGGAGACATGAGCTCTCGCCATTTCAAGCCTGAAATCAGAGTGAGCTCTCTCCGCTTCTCTCCTACTGgtCGTAGCTGGGCTGCTACCTCCACGGAGGGTCTGCTAACCTACTCTCTGGACGGGGCGCTGGTATTTGACCCCTACGACCTTGACCTGGACGTGACCCCCGCCAGCGTCCGCCGACAGCTGCGCCAGGCCAAGTGGGCAGCAGCCATCGTGCTGGCGTTCCGCCTCAACGAGACCGCCCTCACACAAGAAGTCCTGGAGGCCGTGCCACACCACCAGAtcacCGTGGTGTGCGGCTCCCTGCCTGACGTCTATGTAGAGAAACTGTTAGGTTTCATAGCATCAGCCCTGGAGCGATGTGGTCACCTGCAGTTCTACCTGAGCTGGTCCCAGTCTCTCCTCACGCAGCATGGACAGAAACTCAAAACCAGGTCAGGAGCTGTTCTCCCCACCATTCAGTCACTGCAGAAGAGTATTCAGAAACACTTTGAGGATCTCTCAAAACTTTGTGACTGGAACATGTACACCATCCGCTACGCAGTCGCCCTGTCCAAGCAGAAGGGTGTGAAGAGGACAGCGGGGGACGCTCTCTGTGACAAGGACGAGAGTGAGGACTCTGAGGTGATGAGCGAGGACTCTCTGGAGGAGACAGACATGCTCGTGTAGGATGCAGCCACAACCTCTTGAGTGGTGGACTTCCCTTCATCCACTCTGACCTGAATAACCATTGAGTGGTGTGAAGCAGACCCACTGCAGTTCTTCTACATCTAACCACTGataaaggaaaggagacaaggagaggaagccactcAAGAGTACGGTGATGCAGCTTCAACAAGGTTCTgttccaatatccacactagCATACCACTGCTACATTCCAATGAAGCAATGTATTGGGCAAGCATTTTAAGTACTGTAGTATGCTAGGATGAACATCGGAATGTAGCCAAGAGACACTGACCTCATCACACAGGGCCTCTCCCAGTGCCTTCTGGGAAATCAAGATGGCCACCAATAGGCCAAAGGAGAAGGACTGTGGCAGACCACAAAGGATTAAACTGTGCTAATGAAAATCTGTTTATTTACAACAAAGTAGatgtaaacatgtttttgttGTAGTAAACCGTTTGAAAAATGACTGATGAATAGTTGTGTTAAGTTACCTGGATCACCACCAGCACCTGAAATAGTGATGGGGAAAATGTATGCAATATTATTTTGGATACCAAGTATCAGTTCTATATTTGTCATCTTATAGAATGGCTGAGTGACAAGCTGAGTTGCTAGTGATACTAAAATAAACCATTTTATTTCCTTTTTATT

Function

NR:

description
PREDICTED: periodic tryptophan protein 2 homolog

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0055123 digestive system development biological_process

KEGG:

id description
K14558 PWP2, UTP1; periodic tryptophan protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951309.1 True 3530 mRNA 0.53 18 12330934 12342330

Neighbor

gene id symbol gene type direction distance location
ck073 ck073 coding downstream 42832 12281631 ~ 12288102 (-)
LOC110495544 LOC106575695 coding downstream 58746 12260777 ~ 12272188 (-)
LOC118936562 LOC106594175 coding downstream 78385 12250356 ~ 12252549 (-)
LOC118941062 NA coding downstream 80478 12245879 ~ 12250456 (-)
LOC110512633 LOC106575771 coding downstream 85268 12240234 ~ 12245743 (-)
LOC110516060 LOC106575774 coding upstream 11722 12354052 ~ 12380993 (-)
LOC110528732 LOC105019714 coding upstream 127754 12470084 ~ 12506726 (-)
LOC110527216 nud15 coding upstream 210338 12552668 ~ 12553871 (-)
LOC118941039 NA coding upstream 229392 12571503 ~ 12583644 (-)
LOC110495529 LOC106575665 coding upstream 269684 12612014 ~ 12616159 (-)
G1517924 NA non-coding downstream 12205 12316417 ~ 12318729 (-)
G1517919 NA non-coding downstream 20685 12309953 ~ 12310249 (-)
G1517918 NA non-coding downstream 21321 12309059 ~ 12309613 (-)
G1517907 NA non-coding downstream 33159 12297309 ~ 12297775 (-)
G1517905 NA non-coding downstream 36138 12294512 ~ 12294796 (-)
G1517933 NA non-coding upstream 3476 12345806 ~ 12346032 (-)
G1517935 NA non-coding upstream 17040 12359370 ~ 12360832 (-)
G1517948 tuba8l2 non-coding upstream 53488 12395818 ~ 12402098 (-)
G1517951 NA non-coding upstream 62258 12404588 ~ 12405881 (-)
G1517955 NA non-coding upstream 71302 12413632 ~ 12415091 (-)
G1517902 NA other downstream 45302 12285078 ~ 12285632 (-)
G1517822 LOC106575686 other downstream 308494 12020772 ~ 12023228 (-)
LOC110527304 LOC106575687 other downstream 358614 11926474 ~ 11972660 (-)
G1518019 LOC106575703 other upstream 241398 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 563881 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 629323 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 1042426 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1397121 13739451 ~ 13741567 (-)

Expression


Co-expression Network