LOC118941039


Basic Information

Item Value
gene id LOC118941039
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12571503 ~ 12583644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037324.1
AACATCTTGTGGTGTTGTTGAGTTGTCTCATAAACTGAATATGAGAATCCAAAGTATTGCCAGTCTCAACTGTGTAGTATTTCAACTCGTGTGCTACTTAGACAAGAAAGAGAAAAGTCAAAAAGTCTTTCACAGTATCCGGCTCTAGAGTACTTCACCACCTCACTCCTTCCACTGGACCACATGATTTCTTGGAATTAGAAAGTGAAAACAATGTGTTATTGTAAATGGACTTACTGACTCAGTTCTATTCTACATTCATAGAATTACTCATGTAAAAAACATTCCATTAAATTCTGCACTACCAGTTTCTACTTAA
>TU1737764
TAGTTCAGCCAGATATAAGAGCATTGTAGGTTTAACCATTTACTTTATAGTGCTCCCCTTCATCAAAATGTTACATTATACAAAAGAGCCCTGTTGAAAATTACCTTTGTGTTCAATCATGGATCTAAAGGAAGTGAATGAACAGACAAATGGGTTTATTAGTCTAGATAGATACATTCAGGATAGGAAAACATGTACAACAACCAGTGTGCAAACCATGAAGATAAAATATATTTCTCTACAGTGCAAACTGTGTACAGCAGCGTGAGGCTATTTGACATTCTAAACATGCACTTTTTTGCTCTAGTCTTTCACAGTATCCGGCTCTAGAGTACTTCACCACCTCACTCCTTCCACTGGACCACATGATTTCTTGGAATTAGAAAGTGAAAACAATGTGTTATTGTAAATGGACTTACTGACTCAGTTCTATTCTACATTCATAGAATTACTCATGTAAAAAACATTCCATTAAATTCTGCACTACCAGTTTCTACTTAACCATGTGTACCGTTTTATTCCTGTTGTAGACAGAATATTAAATGATCACAAAACCTTTCATGACACCCACCCAACTGTAAATGATAGTTATGATGTTCATATTGAACATGAATTGTCAATGAAAGGAAATGAGGAAACTAGATTTACCCTGCAACTGTGGGATTATTTTCTGTTGACTGTATTGCAGTTGTGGTTTGAAGTGATCTGTCCCAATCGCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037324.1 False 319 mRNA 0.36 2 12571722 12572389
TU1737764 True 720 lncRNA 0.36 2 12571503 12583644

Neighbor

gene id symbol gene type direction distance location
LOC110527216 nud15 coding downstream 17851 12552668 ~ 12553871 (-)
LOC110528732 LOC105019714 coding downstream 64996 12470084 ~ 12506726 (-)
LOC110516060 LOC106575774 coding downstream 190729 12354052 ~ 12380993 (-)
LOC110497022 LOC106574871 coding downstream 229392 12330934 ~ 12342330 (-)
ck073 ck073 coding downstream 283620 12281631 ~ 12288102 (-)
LOC110495529 LOC106575665 coding upstream 39625 12612014 ~ 12616159 (-)
LOC118941036 NA coding upstream 93457 12665846 ~ 12677668 (-)
LOC110527208 LOC106575754 coding upstream 110720 12683109 ~ 12695620 (-)
LOC110527202 LOC106574654 coding upstream 257214 12829603 ~ 12833072 (-)
LOC110495527 LOC106575752 coding upstream 261253 12833642 ~ 12837832 (-)
G1517994 ipo5 non-coding downstream 5701 12562815 ~ 12566021 (-)
G1517981 NA non-coding downstream 16673 12554270 ~ 12555049 (-)
G1518000 NA non-coding downstream 21732 12542254 ~ 12549990 (-)
G1517999 NA non-coding downstream 33459 12538035 ~ 12538263 (-)
G1517998 NA non-coding downstream 35138 12536359 ~ 12536584 (-)
G1518044 NA non-coding upstream 79250 12651639 ~ 12653753 (-)
G1518076 NA non-coding upstream 132605 12704994 ~ 12705267 (-)
G1518082 NA non-coding upstream 146802 12719191 ~ 12719426 (-)
G1518095 NA non-coding upstream 175282 12747671 ~ 12747916 (-)
G1518134 NA non-coding upstream 309052 12881441 ~ 12882005 (-)
G1517902 NA other downstream 286090 12285078 ~ 12285632 (-)
LOC110495544 LOC106575695 other downstream 308653 12260777 ~ 12272188 (-)
LOC110512633 LOC106575771 other downstream 325979 12240234 ~ 12245743 (-)
G1517822 LOC106575686 other downstream 549282 12020772 ~ 12023228 (-)
G1517784 NA other downstream 623377 11947565 ~ 11948345 (-)
G1518019 LOC106575703 other upstream 11339 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 333822 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 399264 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 812367 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1167062 13739451 ~ 13741567 (-)

Expression


Co-expression Network