LOC110495529 (LOC106575665)


Basic Information

Item Value
gene id LOC110495529
gene name LOC106575665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12612014 ~ 12616159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570828.2
GCCATGAGGACCAACTAGACCCCTCCTTCACGGGGACAGGAGGCATGTCCAGGCTGTCTCGCTTCATGGTGTTGGTGAAGGGCTGGTCATCTCACAGTAGTCAGCCCTCAGATGCCCTTCCTTTAGATTCAACCATGAAGTCACACACAGAGTTCAGAGAGGCCTGGAGAGCAGAGAGCATGTCCAGCACCAGACTCTCTGACCAAGTCCGCAGGAGGAACAATGGTCAATGGCCCCTTGCAGCATACAATATGAACAACTGCAACAACAAGGATGACAAAAAAGACGAGAAGAAGGATGAGAAGAAACCGGATCCCCCGAAGCCACCTGATAAGAAACCAGATGAGAAGAAACCGGATCCCCCTAAAGAAGTGTGGATCATTGACCCCGCCACAGATATGTACTACCAATGGCTGACAATAGTAGCTGTCCCAGCATTCTACAACTTAATGCTTCTGGTGCCAAGAGCTAGTTTCAATGACCTGCAAGCCAACTATGTAATGCTGTGGATGGTTCTCGACTACACTTCAGATGTCATCTATTACATTGACACGTTTGTGAGATCTAGGACAGGTTTCCTGGAACAAGGATTGCTCGTAAAGGACCCAGTGAAACTAAAAGAACACTACCGAGCCCAGAAGCAATTTAAATATGACATCATATCGATGATACCTACCGATCTTGCCTTCATTCCATATGGTTACAACAATCCAGAGTTCAGATTCAACCGCCTCGGCAAGATGGCGCGCCTCTTTGAGTTCTTCGACCGAACGGAAACCAGGACAAACTACCCCAACATTTTCAGAATCGGCAACCTTGTGCTTTACATCCTGATCATCATCCACTGGAACGCTTGCGTCTTCTACGCCCTCTCCAAACTCCTGGGCTTCGGCTCAGACACCTGGGTGTACCCAAACATCACTGACCCCGAGATGGGCCAGCTGTCCAGGAAGTACGTCTACTGCCTCTACTGGtccaccctgaccctgaccaccATTGGAGAGACCCCGCCCCCTGTCAGAGACATCGAGTACCTGTTTGTAGTCGCCGACTTCCTCACGGGCGTGCTGATTTTTGCCACCATTGTTGGTAACGTTGGCGCCATGATCTCCAACATGAACGCAGCACGTGCCGAGTTCCAGGCCAAGATCGACTCCATCAAGCAGTACATGGAGTTTCGTAAGGTCTCCAAGGTCCTGGAGGCCAGGGTGGTCAAGTGGTTTGACTACCTGTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTTCTGAAGAACCTGCCGGACAAGCTGAAGGCTGAGATTGCCATCAACGTCCACATGGAGACGCTGAGGAAAGTGCGTATCTTCCAGGATTGTGAAGCCGGCCTGCTGATCGAGCTTGTGCTCAAGCTGCAGCCGCAGGTCTTCAGCCCCGGAGACTACATCTGTAAGAAGGGCGACATTGGCCGAGAGATGTACATCATCAAAGAAGGGAAGCTGGCTGTGGTGGCGGACGACGGGGTAACACAGTGGTGTGTGCTGAGCGATGGGGCGTACTTCGGAGATCTCAGTATCCTGGGCATCAAGGGCAGTAAGGCTGGCAACAGAAGAACAGCCAACATCAGGAGCGTGGGTTACTCTGACCTCTTCGCCCTGTCTAAAGACGACCTGATGGATGCTCTCACTGAGTACCCTGACGCCAAGTACGCTCTGGAAGAGAAAGGCAAGGCCATCTTGATGAAAGACAACCTTATTGATGAGGAATTGGGAAACAAGGCCGACCCCAAAGAAATGGAGAACAAAGTCCTTACAATGGAGACCAACATGGAGGTCATGACGATCAAGTTCACCAGAATGATTGCAGAGTGGGCAACATACCAGGCCAAGGTCAAGCAGCGCATCAGCAACATGGAGGCCAGGGTCAAACCCCTCAGGCAGGGGGAGGATGAGGTGATGAAGGATAAATAATCACATGCAGAATATCTACTCCACATATTTAACAGACACGGACATTAAATGTAAATCTATAACCCATACTCACAATTTAGATCTGGTTAGATCTAAATAGCTTTCCATCCAAGTGGATTATAACCATAAACTGTATTGTTGACTAGTCAAAAGCAGtgaaggctggtgggaggagctataggaggatgggctcattgtaatggttgcaatggaataaatggaacgcagtcaaacatgtggtttccatatgtttgatacaaTTAAATGTTTTGCATTCtaaccattacaatgagccagtcctcctatagctcctcccaccagcctccactggtcaaaAGTATACCTAGATTCAAACATAAACTCAGCCAAAAAAGAAAGTCCTCTCACTGTTAACTGCGTTTAaggcaaacttaacgtgtaaatatttgtgtgaacataagattcaacaactgagacata

Function

NR:

description
PREDICTED: cyclic nucleotide-gated channel cone photoreceptor subunit alpha-like

GO: NA

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570828.2 True 2408 mRNA 0.49 8 12612014 12616159

Neighbor

gene id symbol gene type direction distance location
LOC118941039 NA coding downstream 39625 12571503 ~ 12583644 (-)
LOC110527216 nud15 coding downstream 58143 12552668 ~ 12553871 (-)
LOC110528732 LOC105019714 coding downstream 105288 12470084 ~ 12506726 (-)
LOC110516060 LOC106575774 coding downstream 231021 12354052 ~ 12380993 (-)
LOC110497022 LOC106574871 coding downstream 269684 12330934 ~ 12342330 (-)
LOC118941036 NA coding upstream 49687 12665846 ~ 12677668 (-)
LOC110527208 LOC106575754 coding upstream 66950 12683109 ~ 12695620 (-)
LOC110527202 LOC106574654 coding upstream 213444 12829603 ~ 12833072 (-)
LOC110495527 LOC106575752 coding upstream 217483 12833642 ~ 12837832 (-)
LOC110495524 LOC106575751 coding upstream 224035 12840194 ~ 12844442 (-)
G1517994 ipo5 non-coding downstream 45993 12562815 ~ 12566021 (-)
G1517981 NA non-coding downstream 56965 12554270 ~ 12555049 (-)
G1518000 NA non-coding downstream 62024 12542254 ~ 12549990 (-)
G1517999 NA non-coding downstream 73751 12538035 ~ 12538263 (-)
G1518044 NA non-coding upstream 35480 12651639 ~ 12653753 (-)
G1518076 NA non-coding upstream 88835 12704994 ~ 12705267 (-)
G1518082 NA non-coding upstream 103032 12719191 ~ 12719426 (-)
G1518095 NA non-coding upstream 131512 12747671 ~ 12747916 (-)
G1518134 NA non-coding upstream 265282 12881441 ~ 12882005 (-)
G1518019 LOC106575703 other downstream 11683 12583728 ~ 12600331 (-)
G1517902 NA other downstream 326382 12285078 ~ 12285632 (-)
LOC110495544 LOC106575695 other downstream 348945 12260777 ~ 12272188 (-)
LOC110512633 LOC106575771 other downstream 366271 12240234 ~ 12245743 (-)
G1517822 LOC106575686 other downstream 589574 12020772 ~ 12023228 (-)
LOC110495512 LOC106574713 other upstream 290052 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 355494 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 768597 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1123292 13739451 ~ 13741567 (-)
G1518991 NA other upstream 1354922 13971081 ~ 13972538 (-)

Expression


Co-expression Network