LOC118941033 (LOC106574652)


Basic Information

Item Value
gene id LOC118941033
gene name LOC106574652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12869440 ~ 12874057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951357.1
agGTAGTCCCTCCCCGTTTTGGTCCGTTTGGTGTCAAGTGAATACAACCCTGTGTAGTTTTGTAACACAGCAATAATGAATTTACgcaagttctatatcgacattatTATGCGCATTCTGGTGTTCATACGTGCAGCAGAAACTACACCTTCAATAGGGTGAGGATCATTCTACAATTTGACATTTATACGTAACGACACCAGTCTCTAGCCGAGATGACCCAGGTGCGAAGGTCGGTGGGAGAGGCGCTGTGGGGAATGTGTGCCGCCGACGCCATGTCCATGCCTGCGCACTGGTACTACAACATCGATGACATCAAGAGAGATTTTGGAGGATGGATCACCGGCTTCAACGCACCCAACAACAGACACCCGTCCAGCATCCTCACCCTCTCCAACTCAGCGGGGAGCGGTCGCACTGCATGGTCCTCTGGTGGGAACAGACCCCATGTTGTGGGTAGCGTAATCCTCCATAACAAGCTCAAGTTCTGGAAGGCATCGGGTGGATCGGTCCACTATCACCAAGGTCTCCAGGCTGGTGAGAATACCCTGAATGCCATCTGCTCCCTGAGGGTGGCACAGGCCCTGACAGGGGGGAAGTTTGCCAGCGTGGCAGAACCAGCGGCGAGGGGGGCGGTGCTGGCTGATTACGTACACTTCATGACCACGCCAGGAACACATGGAGACACCTACGCAGAGTCCTTCCACAGAGCATTCTTCTCCGACTGGCAAGACACCAGACCCACTTCCTCAAGCAAGGTGTTGGAGTTTGCAGAGCAGCGCTACCAGCAGAAGATGAACGTGTCAGTCCCTGACAGCCAGCTAGACGCTATTGGCTGCCTCCCCATGGCCATCCCCTTTGTGCTTCTCTCTGCCACAGCCAATGAGGACCAAGCTgtGTCTGCAGCAGTGGAGTTTGTCCGGCTCACCCACCCCCACCCCAAGGTGGAGAAATATGTGACGCTGTACGCCCGAGCCCTCCATGCCACTCTGAATGGGGCGTGTCTGAAGCAGCAAGCGGAGGCCTTCCTCAAGTCACCCGACCTGGACGCATGGGACACTTGCAAGCCCTACATACAGAAAGCAGCCAGGTTTCCAACCTCTTCTGCAGAGGGGCTCAAGGTTCACCAGAGTGCAGTGGAAATGCTTGGCATGGCCTGCTACACCCGAGGTGCCCTCAGTAGTATGTTCTACCTAGCACATGAGTTTCACAACGACCCTCATGGAGGGATCCTGGCAAACACCAATTGTGGCgGAGAGAACTGCAACAGGGGTTCTGCTTTGGGGGCTCTGCTGGGGGCAAGGGCAGGGTACACGGGTGGATCTGTACCCCAGGAGTGGAAGGATGGATTGAGGAACACACAGGAACCAATCCATGAAATACTAAAGATGCTCCGAGACTGCCCCCTATAGGACTTAAAGCCAGCATCAGAGCACTGACACacataccttaccttacctttTGGTTGGTGTTCACATGCTGGCCGTTGTATGCACAAAAAGATACCTTACAATGAAAAAGATTACTATGCACAAA
>XM_036951358.1
tagGTAGTCCCTCCCCGTTTTGGTCCGTTTGGTGTCAAGTGAATACAACCCTGTGTAGTTTTGTAACACAGCAATAATGAATTTACgcaagttctatatcgacattatTATGCGCATTCTGGTGTTCATACGTGCAGCAGAAACTACACCTTCAATAGGTAACGACACCAGTCTCTAGCCGAGATGACCCAGGTGCGAAGGTCGGTGGGAGAGGCGCTGTGGGGAATGTGTGCCGCCGACGCCATGTCCATGCCTGCGCACTGGTACTACAACATCGATGACATCAAGAGAGATTTTGGAGGATGGATCACCGGCTTCAACGCACCCAACAACAGACACCCGTCCAGCATCCTCACCCTCTCCAACTCAGCGGGGAGCGGTCGCACTGCATGGTCCTCTGGTGGGAACAGACCCCATGTTGTGGGTAGCGTAATCCTCCATAACAAGCTCAAGTTCTGGAAGGCATCGGGTGGATCGGTCCACTATCACCAAGGTCTCCAGGCTGGTGAGAATACCCTGAATGCCATCTGCTCCCTGAGGGTGGCACAGGCCCTGACAGGGGGGAAGTTTGCCAGCGTGGCAGAACCAGCGGCGAGGGGGGCGGTGCTGGCTGATTACGTACACTTCATGACCACGCCAGGAACACATGGAGACACCTACGCAGAGTCCTTCCACAGAGCATTCTTCTCCGACTGGCAAGACACCAGACCCACTTCCTCAAGCAAGGTGTTGGAGTTTGCAGAGCAGCGCTACCAGCAGAAGATGAACGTGTCAGTCCCTGACAGCCAGCTAGACGCTATTGGCTGCCTCCCCATGGCCATCCCCTTTGTGCTTCTCTCTGCCACAGCCAATGAGGACCAAGCTgtGTCTGCAGCAGTGGAGTTTGTCCGGCTCACCCACCCCCACCCCAAGGTGGAGAAATATGTGACGCTGTACGCCCGAGCCCTCCATGCCACTCTGAATGGGGCGTGTCTGAAGCAGCAAGCGGAGGCCTTCCTCAAGTCACCCGACCTGGACGCATGGGACACTTGCAAGCCCTACATACAGAAAGCAGCCAGGTTTCCAACCTCTTCTGCAGAGGGGCTCAAGGTTCACCAGAGTGCAGTGGAAATGCTTGGCATGGCCTGCTACACCCGAGGTGCCCTCAGTAGTATGTTCTACCTAGCACATGAGTTTCACAACGACCCTCATGGAGGGATCCTGGCAAACACCAATTGTGGCgGAGAGAACTGCAACAGGGGTTCTGCTTTGGGGGCTCTGCTGGGGGCAAGGGCAGGGTACACGGGTGGATCTGTACCCCAGGAGTGGAAGGATGGATTGAGGAACACACAGGAACCAATCCATGAAATACTAAAGATGCTCCGAGACTGCCCCCTATAGGACTTAAAGCCAGCATCAGAGCACTGACACacataccttaccttacctttTGGTTGGTGTTCACATGCTGGCCGTTGTATGCACAAAAAGATACCTTACAATGAAAAAGATTACTATGCACAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574652 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951357.1 False 1536 mRNA 0.54 8 12869440 12874056
XM_036951358.1 True 1504 mRNA 0.54 8 12869440 12874057

Neighbor

gene id symbol gene type direction distance location
LOC118941031 LOC106574661 coding downstream 4067 12862329 ~ 12865373 (-)
LOC110512308 LOC106575728 coding downstream 7229 12857249 ~ 12862211 (-)
LOC118936561 LOC106575751 coding downstream 15660 12850090 ~ 12853780 (-)
LOC110495524 LOC106575751 coding downstream 24998 12840194 ~ 12844442 (-)
LOC110495527 LOC106575752 coding downstream 31608 12833642 ~ 12837832 (-)
LOC110495512 LOC106574713 coding upstream 24734 12898791 ~ 12910954 (-)
LOC110519411 dusp27 coding upstream 37962 12912019 ~ 12922730 (-)
LOC110513917 LOC106575727 coding upstream 59605 12933662 ~ 13031321 (-)
LOC110495504 dylt3 coding upstream 207762 13081819 ~ 13084730 (-)
LOC110495506 LOC106574645 coding upstream 210786 13084843 ~ 13101678 (-)
G1518095 NA non-coding downstream 121524 12747671 ~ 12747916 (-)
G1518082 NA non-coding downstream 150014 12719191 ~ 12719426 (-)
G1518076 NA non-coding downstream 164173 12704994 ~ 12705267 (-)
G1518044 NA non-coding downstream 215687 12651639 ~ 12653753 (-)
LOC118941039 NA non-coding downstream 285796 12571503 ~ 12583644 (-)
G1518134 NA non-coding upstream 7384 12881441 ~ 12882005 (-)
G1518100 creg1 non-coding upstream 8468 12882525 ~ 12885636 (-)
G1518139 NA non-coding upstream 29774 12903831 ~ 12904177 (-)
G1518143 NA non-coding upstream 49020 12923077 ~ 12923360 (-)
G1518019 LOC106575703 other downstream 269109 12583728 ~ 12600331 (-)
G1517902 NA other downstream 583808 12285078 ~ 12285632 (-)
LOC110495544 LOC106575695 other downstream 606371 12260777 ~ 12272188 (-)
LOC110512633 LOC106575771 other downstream 623697 12240234 ~ 12245743 (-)
G1517822 LOC106575686 other downstream 847000 12020772 ~ 12023228 (-)
bcor LOC106574692 other upstream 510699 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 865394 13739451 ~ 13741567 (-)
G1518991 NA other upstream 1097024 13971081 ~ 13972538 (-)

Expression


Co-expression Network