LOC110495506 (LOC106574645)


Basic Information

Item Value
gene id LOC110495506
gene name LOC106574645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13084843 ~ 13101678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951319.1
GCTGCACAATAGAAGTTGATCCCTGGGCTGGTTTTCAGTTTATAATATGCCTCTTCCCGTCTGCCCTGCCTCATTCCCCTTCAGATCTGAGACCACTGGATAAATGTAAGCAAAAAGGGAACATTATTTCTGACATTTGCTTTCAACAGACGCCCCAGATGTGCGAGGGGGACTGAACAAATGACACAGGGGAGGATGCGACTCGAATCAAAATGAAACGCAGCCTTGGTTGCTACAGGTGAAATTTTGTTTACATCCGGGTTGTTTCGGACGaaaacaacacacaacacgcatAGAAGCAGCTAACCCTGTGTAGTGTAGTTGCTAAGCCGATTTGACACTACGATGGCAGGGGAGACAGAAGACGAGATACCTGAAACGGGAGCAGTCTTCACCTTTGGAAAAAGCAAATTTGCAGATAACGTCCCCAGTAAATTTTGGCTGAAAAATGATGTACCTCTGAAAATCACCTGTGGGGATGAGCACACAGCATTGATAACAGagaATGGCAAGCTTTTCATGTTTGGCAGTAACAACTGGGGTCAGCTGGGTTTGGGATCAAAGACCATGGTGAACAAGCCCACTTGTGTGAAAGCTTTGAAGTCTGAAAAGGTGCGGCTTGCAGCCTGTGGAAGAAATCACACTATAGTTTACACTTCTCGGGGAAACGTGTACTCTACCGGTGGAAACAATGAAGGTCAGCTAGGTCTGGGAGACTgtgaggagaggacagccttccaATTGGTGGACTTCTTCAGTTCACATGGACCAATCAAAATGCTTGCTGCCGGCTCCAACACCTCTGCTGCCCTCACAGAGAGTGGGACGCTGTTCATGTGGGGTGACAACACTGAGGGGCAGATCGGCCTGGGGAAGGAGAGCAGTGCCCTGACCCCCCAGGAGGTCACTGTGGGTCGGCCAGTGGCCTGGGTGTCCTGTGGGTACTACCACTCTGCCTTCGTCACTGTTGACGGGGGCCTGTACACATTTGGGGAGTGCGACAGCGGCAAACTGGGCCTGGCCACGGGTCAGCTCGATGGACACCGCATGCCCCAGCTGGTGAAGGGCATCACAGACCAGGTGACCCAGGTGGCATGTGGAGGCGGGCACACCGTGGCTGTGACAGAGGAGGACCTGTACACCTTTGGCCTGGGTCAGTTTGGTCAGCTGGGCCAGGGGACCTTCATCTTTGAGGCGAGGCTGCCCAGAGCGGTGGATCACTTCAGGAAGGGCCGAGTACGACAGGTGATGTGTGGGGAGAACCACACTGCTGTCATCACAGACAATGGTCTTCTCTATACCTTTGGGGACGGGAGACATGGGAAGctgggtctgggagaggagaacTTCACCAATCAATTCAAGCCCACTCTCTGTCCACGCTTCCTCAAGTACAACGTCCAAgcgGTGACATGCGGAGGTTGCCACATGCTGGTTCTAGCCAAGCCCAGAGACAAGAGCTGTCAGGAAGTGACTCTGGAGGAGAATGATGTCACAGAGGACTACATGGAGAAGTCCTACACAGAGCTCTTAGGGGACACCCTCACCTCCACCCCTGCTATCCTGAACAGTAGCCTCTCTGCCCgggtcaggaggagagagaggGAGCGTTCCCCGGAGCAGTTTGGGCTCATGTTCCGGACCCTGCCCCCCCTGACGTCCGGACACCTCAATACCTCCGCACCCCTGCCCGTGTCCAGCCAGACCATCCCCTCCAGTCTGCCCCCCAAGGAGCTAACCAACAGAAAGGTGCACAACGGCATTCACCAACACAGGAGCACTGGGTCTAACAAGAAGGAAAAGAGGTCAGCTGAGAAGGGAAGGGATGAGGGAGACAGCAGCACTGTGGAGAACATGATGGACAACGAGAGTGTTAAAGATCTGGGAGACACCACGGACTTCCTCAACATGACTCATGTGATGAAAATGGACCCCAGTGACAAGACGTTGATGTTGTCCCCTGTACAGAAGGATTTAAGAGCTGAAGAGGGGGAAGGACAtaaggatgaagaagaagaagaagaagagaaggaggagaacaacaaagcagaggagaaagagaaatcTGAGGACATGGAGGGACAATCATTACAGGGTCAGTCCACAGCAGAACCCGTCCAGGGACCAGAGGGTGTGAAAGAAGAAACTCTCCCAGACGGTGGGCAGAAAGTTGCAGAGGACTCAGGTCAGCCCAGTCCTTTGGCTCCGACAGAGGAGAGCTCTGCATCCAGCACTCAGCTGCAGAATCGAACAACAGAGGAGAAACCCAAGAATCAACCAAGGACCAACAGAAAGCTGTTGCTGTTCAAACGCCTGTCCTCCTCCAAAGCCAAGCAGACAGAGGACAGTGCGGAAGCCCCAGCAGAGGGCACCGGCATGGGGGAGCTGCCTGCCAGTGCCAAGGGTCCCTCTGCAGGGCTGGAGAACAGAGATCCATCAGAGACCAGCGCTAGTGGTGCCCAGCCCCCTCTGAGAGCACCCTCGGACTCTGGTGGTAGAGGTGCCCGCTCTACCACCTGCACCCTACTGTGACGCCACTTATTGGGTGTTGGAGAACTGGACTGGCAGCGCCAACAACCAATAAACCCTTGAAGAGGATGCACATTGACTGTACACAACAAACAACCACTCCACTTTGAACACTAGCGAACTTCTCACAAAGTGACCTATTTATTGACATTCAGTTCCCAAACTTCCCATATGCGAAACGTGTATTATAAATGTGTATTATAAATGTGTATACTTGTATTTAACGTGCGCAAAAATGTCTTTAATTAACCACAGTGTGTTTTGATTGTGTTTTTATAACGTAGTTGTGTGTGTTAAACTGTGAGGATACACTATTTATTGCTGACTGAAATATCCCAAATGCACAATTGCACTTTAAATGTAGCCTTATTGTGTGTTTTTCAGGGAAATATgacatctgtgtgtgttctgatatGTTATTTTCATCGTCTCATAAACCGTTTGAACTTGGTGCTGGTGTGACAATCATCTCATGATTTGGATACTAGTAAAACAACTTTATGTGAAA
>XM_036951320.1
TATGGCTGCACAATAGAAGTTGATCCCTGGGCTGGTTTTCAGTTTATAATATGCCTCTTCCCGTCTGCCCTGCCTCATTCCCCTTCAGATCTGAGACCACTGGATAAATGTAAGCAAAAAGGGAACATTATTTCTGACATTTGCTTTCAACAGACGCCCCAGATGTGCGAGGGGGACTGAACAAATGACACAGGGGAGGATGCGACTCGAATCAAAATGAAACGCAGCCTTGGTTGCTACAGGTGAAATTTTGTTTACATCCGGGTTGTTTCGGACGaaaacaacacacaacacgcatAGAAGCAGCTAACCCTGTGTAGTGTAGTTGCTAAGCCGATTTGACACTACGATGGCAGGGGAGACAGAAGACGAGATACCTGAAACGGGAGCAGTCTTCACCTTTGGAAAAAGCAAATTTGCAGATAACGTCCCCAGTAAATTTTGGCTGAAAAATGATGTACCTCTGAAAATCACCTGTGGGGATGAGCACACAGCATTGATAACAGagaATGGCAAGCTTTTCATGTTTGGCAGTAACAACTGGGGTCAGCTGGGTTTGGGATCAAAGACCATGGTGAACAAGCCCACTTGTGTGAAAGCTTTGAAGTCTGAAAAGGTGCGGCTTGCAGCCTGTGGAAGAAATCACACTATAGTTTACACTTCTCGGGGAAACGTGTACTCTACCGGTGGAAACAATGAAGGTCAGCTAGGTCTGGGAGACTgtgaggagaggacagccttccaATTGGTGGACTTCTTCAGTTCACATGGACCAATCAAAATGCTTGCTGCCGGCTCCAACACCTCTGCTGCCCTCACAGAGAGTGGGACGCTGTTCATGTGGGGTGACAACACTGAGGGGCAGATCGGCCTGGGGAAGGAGAGCAGTGCCCTGACCCCCCAGGAGGTCACTGTGGGTCGGCCAGTGGCCTGGGTGTCCTGTGGGTACTACCACTCTGCCTTCGTCACTGTTGACGGGGGCCTGTACACATTTGGGGAGTGCGACAGCGGCAAACTGGGCCTGGCCACGGGTCAGCTCGATGGACACCGCATGCCCCAGCTGGTGAAGGGCATCACAGACCAGGTGACCCAGGTGGCATGTGGAGGCGGGCACACCGTGGCTGTGACAGAGGAGGACCTGTACACCTTTGGCCTGGGTCAGTTTGGTCAGCTGGGCCAGGGGACCTTCATCTTTGAGGCGAGGCTGCCCAGAGCGGTGGATCACTTCAGGAAGGGCCGAGTACGACAGGTGATGTGTGGGGAGAACCACACTGCTGTCATCACAGACAATGGTCTTCTCTATACCTTTGGGGACGGGAGACATGGGAAGctgggtctgggagaggagaacTTCACCAATCAATTCAAGCCCACTCTCTGTCCACGCTTCCTCAAGTACAACGTCCAAgcgGTGACATGCGGAGGTTGCCACATGCTGGTTCTAGCCAAGCCCAGAGACAAGAGCTGTCAGGAAGTGACTCTGGAGGAGAATGATGTCACAGAGGACTACATGGAGAAGTCCTACACAGAGCTCTTAGGGGACACCCTCACCTCCACCCCTGCTATCCTGAACAGTAGCCTCTCTGCCCgggtcaggaggagagagaggGAGCGTTCCCCGGAGCAGTTTGGGCTCATGTTCCGGACCCTGCCCCCCCTGACGTCCGGACACCTCAATACCTCCGCACCCCTGCCCGTGTCCAGCCAGACCATCCCCTCCAGTCTGCCCCCCAAGGAGCTAACCAACAGAAAGGTGCACAACGGCATTCACCAACACAGGAGCACTGGGTCTAACAAGAAGGAAAAGAGGTCAGCTGAGAAGGGAAGGGATGAGGGAGACAGCAGCACTGTGGAGAACATGATGGACAACGAGAGTGTTAAAGATCTGGGAGACACCACGGACTTCCTCAACATGACTCATGTGATGAAAATGGACCCCAGTGACAAGACGTTGATGTTGTCCCCTGTACAGAAGGATTTAAGAGCTGAAGAGGGGGAAGGACAtaaggatgaagaagaagaagaagaagagaaggaggagaacaacaaagcagaggagaaagagaaatcTGAGGACATGGAGGGACAATCATTACAGGGTCAGTCCACAGCAGAACCCGTCCAGGGACCAGAGGGTGTGAAAGAAGAAACTCTCCCAGACGGTGGGCAGAAAGGTGAGCATAGAAGAGATGTTCTGAAATGTCTGACAAACAGTTGCAGAGGACTCAGGTCAGCCCAGTCCTTTGGCTCCGACAGAGGAGAGCTCTGCATCCAGCACTCAGCTGCAGAATCGAACAACAGAGGAGAAACCCAAGAATCAACCAAGGACCAACAGAAAGCTGTTGCTGTTCAAACGCCTGTCCTCCTCCAAAGCCAAGCAGACAGAGGACAGTGCGGAAGCCCCAGCAGAGGGCACCGGCATGGGGGAGCTGCCTGCCAGTGCCAAGGGTCCCTCTGCAGGGCTGGAGAACAGAGATCCATCAGAGACCAGCGCTAGTGGTGCCCAGCCCCCTCTGAGAGCACCCTCGGACTCTGGTGGTAGAGGTGC

Function

NR:

description
X-linked retinitis pigmentosa GTPase regulator-like isoform X2

GO: NA

KEGG:

id description
K19607 RPGR; X-linked retinitis pigmentosa GTPase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951319.1 False 3037 mRNA 0.51 17 13084843 13101674
XM_036951320.1 True 2548 mRNA 0.54 17 13085376 13101678

Neighbor

gene id symbol gene type direction distance location
LOC110495504 dylt3 coding downstream 113 13081819 ~ 13084730 (-)
LOC110513917 LOC106575727 coding downstream 53522 12933662 ~ 13031321 (-)
LOC110519411 dusp27 coding downstream 162113 12912019 ~ 12922730 (-)
LOC110495512 LOC106574713 coding downstream 173889 12898791 ~ 12910954 (-)
LOC118941033 LOC106574652 coding downstream 210786 12869440 ~ 12874057 (-)
bcor LOC106574692 coding upstream 210950 13312628 ~ 13402659 (-)
LOC110495500 cd80 coding upstream 304736 13406414 ~ 13409467 (-)
cd80 cd80 coding upstream 319704 13421382 ~ 13439064 (-)
LOC110495499 LOC106575543 coding upstream 364226 13465904 ~ 13470070 (-)
LOC110495493 NA coding upstream 583528 13685206 ~ 13699630 (-)
G1518178 NA non-coding downstream 30808 13053727 ~ 13054035 (-)
G1518176 NA non-coding downstream 32047 13052597 ~ 13052796 (-)
G1518174 NA non-coding downstream 35648 13048831 ~ 13049195 (-)
G1518172 NA non-coding downstream 37735 13043899 ~ 13047108 (-)
G1518171 NA non-coding downstream 41338 13043243 ~ 13043505 (-)
G1518216 NA non-coding upstream 51348 13153026 ~ 13153398 (-)
G1518217 NA non-coding upstream 56060 13157738 ~ 13158042 (-)
G1518225 NA non-coding upstream 77528 13179206 ~ 13184410 (-)
G1518226 NA non-coding upstream 80846 13182524 ~ 13184160 (-)
G1518229 NA non-coding upstream 91610 13193288 ~ 13194631 (-)
G1518019 LOC106575703 other downstream 484512 12583728 ~ 12600331 (-)
G1517902 NA other downstream 799211 12285078 ~ 12285632 (-)
LOC110495544 LOC106575695 other downstream 821774 12260777 ~ 12272188 (-)
G1518858 LOC106574768 other upstream 637773 13739451 ~ 13741567 (-)
G1518991 NA other upstream 869403 13971081 ~ 13972538 (-)
G1519529 LOC106575569 other upstream 1383001 14484679 ~ 14486096 (-)
LOC110495482 LOC106575623 other upstream 1404722 14506227 ~ 14507592 (-)

Expression


Co-expression Network