XLOC_003420 (foxp4)


Basic Information

Item Value
gene id XLOC_003420
gene name foxp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21910343 ~ 22094392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006687
ATTCAACACTGATTTCTCTGCGAATGAGCGAGGAACAGACGAGATGCCAAAAACTCCAGCGAGAAGCATTATTGGGACTTTAGGAAAACTCACCGTGTGACTAACAGAGAGGAAGAGAGAAGACCTGAAGCGACGAGGAGGCGTAAAGAGCCGCGTGCTTGTTCTTCATGAACTTTGAGGAGCGCTGTGACCATGCAGCCTTTGAGCTAGTGCACGATTATTGTTTTCACTTATCACCCTACTGAGTGACCAGTCTGAGGGAGAGGAAGCCAGTAAAAAGGAAAAGAAGACTAATAAAGACAGTTGTCGTTTAAAGTAATGGTCTGAAGACATCACTCATagaacaggatttttttttttcctttttgcgtTGCTCTTCTGAAGGTTTCTGGAATCACTGGGACATTCACGAGAGCTGGAGCGACACATCCACATGGTCCAGCCGTAGAGTGAAAGTAGAGTTCTTCACAATATCCTAACAGGAAGCGAAACCCTCACCCCTTGATGGAGATGATGTGGATGAAGAGTGGTCTGGCTGCCCTCTGTTAAGGTCTCCAACTTTTCAATAGGCATACCGATAATCCACTTCTCTGCTCGGTGCCACGTGATGATGGTAGAATCAGCAACTGAGACCATTCGAACAACACCCTCCAATCAAAATGGAGTCAGCAGTCTAAGCAGCCAATCAGACGGCGGAGGAAGAGAGGGTGGGTCCAACGGTGACACCAATGGGGAGATCAGCCCGGTGGATTTACTGCATCTTCAACAgcaacag
>TCONS_00006688
CGAGAGCTGGAGCGACACATCCACATGGTCCAGCCGTAGAGTGAAAGTAGAGTTCTTCACAATATCCTAACAGGTGCCACGTGATGATGGTAGAATCAGCAACTGAGACCATTCGAACAACACCCTCCAATCAAAATGGAGTCAGCAGTCTAAGCAGCCAATCAGACGGCGGAGGAAGAGAGGGTGGGTCCAACGGTGACACCAATGGGGAGATCAGCCCGGTGGATTTACTGCATCTTCAACAgcaacagGCCCTCCAGGCAGCACGCCAGTTCATCCTCCAGCAGGCCACAGGACTCAACTCTCCCAGCAGCAACGAGGTCAAACAGAGCCCTGTGCAGGTGCCTGTATCAATGGCGATGATGACCCCACAGATGATCACCCCTCAGCAGATGCAGCAGATCCTCTCTCCGCCTCAACTTCAAGCTTTACTCCAACAGCAACAAGCCCTTATGCTGCaacagCTGCAAGAGTACTACAAGAAGCAACAGGAGCAGTTGCACCTCCAGCTCCTTACCCAGCAACAGCAAGCAGGGAAGCAGGCCAAAGAGCAGCAGCAGTTGGGGAATAAACAGCTGGCTTTCCAGCAGCAGTTGATCCAGATGCAACAGCTACAGCAGCAACACATTCTGAATCTACAAAGACAAGGCCTGGTGAACCTACAGCCGGGCCAAGGAGCAGTACCCATTCAGAGCCTGCAGCAAGccATGTGTCCCACTGACCTGCAGCAGTTGTGGAAGGATGTGGCCGGTGTTCAGAGCACAGAGGAGGTCATGAAACACGAGGGCCTCGATCTGACCACCAACAGCTCCAACACTACCTCATACTCGGCCTCCAAGGTCTCACCTCAGATCCCTCATCATCCTTTGCCAAATGGACAAAACTCTGTGCACACTCCAAAGAGAGACAGAGCAAGACTCTTTGAGTGGATCTCGTCCTTCACCAAGGAGTCCAGTGACGAGCATCTCACGCCTTATTCCAAAGGCACTCCCCTGCAGAGCACTCACTCGACCCACGAGGAACACACAGCCTCTCACCCACTCTACGGACACGGCGAGTGCAAGTGGCCTGGTTGTGAGGCACTCTGCGAGGACATGGGCCAGTTCATTAAgcACCTGAATAGTGAACACGCCCTGGATGATCGCAGTACGGCCCAGTGCAGGGTCCAGATGCAGGTCGTTCAACAGCTGGAGATACAGCTGGCCAAAGAGAGCGAGCGTCTGCAGGCCATGATGGCCCACCTGCACATGCGTCCATCAGAGCCAAAGCATTTCAACCAACCTCTAAACCTGGCCTCAAGCGTGTCGCTTTCGAAAAGAGAAAATGATGGTTTTCCTGAGGGTCTTCCTCATCCTCCCACCTCTGCTGCAACCCCCATCACCCCGATGAGGCAGGGCCCCTCCGTCATCAGCTCCTCCAGCCTCCACGGGGTCGGACCCATCCGGCGACGCAACTCCGACAAGTTCTGCACCCCCATCGCTTCAGAACTTGCACAGAATTGTGAATTCTACAAAAACGCTGATGTCAGGCCTCCATTCACCTACGCCTCCCTCATACGACACGCCATTCTGGAAGCCCCTGACCGACAGCTGACTCTAAATGAGATCTATAACTGGTTTACACGAATGTTCGCCTATTTCAGGAGAAACACAGCAACGTGGAAGAATGCTGTGCGCCATAACCTGAGTCTGCACAAGTGCTTTGTGCGGGTCGAGAATGTTAAGGGTGCTGTTTGGACTGTGGATGAAGTGGAATACCAAAAGAGGAGACCACCAAAGATGACCGGAAGCCCCACTCTTGTGAAAAATATGATTTCTGGACTGGGATTTGGCTCACTGAATGCCAGCTATCAGGCTGCGCTGGCAGAGAGCAGTCTTGGTCTTCTGAACAGCCCCACGCTGATGAACAACAGCACAGGTGCGAGTCTCAACATGCTGCACATTGGCCATGATGATGTCAGCAGCACCGTTGAACAAGTCAACAGTAACGGCAGCTGCAGCCCCGGCCTTTCTCCACAGCAGTACGGacatcaGATCCACGTGAAGGAGGAGCCGGCAGAGATGGAGGAGGACAGCAGACCCGTGTCCCTCTTGGCATCAGTCACTCAAAACCTGAGCATGCCCAGTGACGATCGCGACATGGAGGACGAGCTTCCCACTGAAGAGCTGGAGTAAGAGGAAGCCCCGTCCCCTACCTCACGTTCAACACGTTATAGATcaagtgaggaaaaaaaaaacaaagaaacaaaaccaACTTCAAAAACCAAAACAGGGTTCGACCTCATCTGttcacaatgcaaaaacaactttttcccctgattttctttttgtttatttcatcaGACAATTCCCTCAAAAAGGCCCTTTGAACAGCGCATTGGTGTTTTGAAACATAGTCTGATAGAAGCTGCTGAGGGAGACCTGACGTCAgtacacaaacttttttttttttttttttttttttagaagtcaCTCGAGGTTTCtctattttaaatctttttagctTTAATTTTTATGTTCTTCGGGCCTGAGAACACTGCTTTTCTATGGGATAAACACAAAGCGGTGATTTACCTCAGAAAGatgagaaaaaaagaggaaaaagatGACAAACACACATCTTTAGAATGACTTCAACCGCATTTTTGTACTCTTTCGAAAGAGGATGCTGCAAGACTCAGTAACTTTGCGCTCATACAGATTTCAAATTCACCACTCTCAACAAAAGCAAAGACTGAAACAAAATGAGCTGAAAGACTGACAACGGCATCCCTTGCCACTTGaccaatttctttttttgttgttgttgttgttggtctcCCTTACAAGACTGGACTAGAGAAAGGAAGGATTCGTTTTGGCTGGAGGCAGGTTTAGCCTCTTATCTTCATCTGATGGAATCTGCCAGAACGTGTTTATCCCTCTTGCTCTTTGTCAGACTTGACGTAGAAAATGTCGCTACCCCCAAAAAAGGCCTATTTCAGGAAAAGgaacttttttcttcttcttctttgtttttttttttttgctgttgttctcCTGTGGTGCTGTTATGACAGCCAGACTGACACGAGGCTTTTGGAGGACCAGCTCAGAGACTTTATTAACTGTATTGTTGATTATAATATGTGTGCAGTAGCTTTCAATTTCGTTTTGAAATCATAgtcattgatttttaaagcatcaactttttttgtgttgttttcattgTGCTGTAATTCAACTACATGTTCTGTTGATGATTGTTTTGTTTCGATTAGTTCTTTTCGATTCTCTCATCATTCCAAAAATGGGTTACGTTTGGGAGAGAAGTTCCACCACAAAACAAAAATCCATATTCTACAAACTCCAccccaacaacaaaaacaatgaaaACTATGTCCAAACTAGATCCGGATAGCACTTCCGAAATGAAATGATAGCAAACAAAAACCACTCCAACCTTCTGCAGAGAAGCTGAAACTAAAGAGACTGAGGTGAAATACGCATCACAGGGCTCCCTGTAAGATCCTGGAAAACTTTACAGGCACTCATATCTctctttttttcaacatatttgcttcatttgttcatttaagtCTGATGTATTTTCACAAATTTGCGCATTTGCTTTGTGGATTTCCAAATTTTCTGTAGTAGCCACTTGATTGAGATCAGCTGCGATACAAATTATTGCTTTAATGTAAACGATGAAACGGTCACGTATTACCTCAGACCACAGTGTTTGCCCCCTcacgctgttattattattattattataaaggggATTTGTACTGTGGCTAACCAATATGGTGACTCTGTCATTATCAGTTCAAAGTTCTATAGTTGCTAGATATATAAAAGCTATTTGCAATTCACTGTGTGAGTAGAAAGTGTCTGATTAGCTTGTGAGATTTTGCTTTCATTGaattataaagttaaaaaaaagagcTTTTCTCAAGTAGTGCCAAGCCAAATTccaagttttaatttaatatatgttgctttaattttagtttagttcttCCCCATTTTACTTTTGTTACAGGTAACCAAAGAGATATTtagtaaaccaaaaaaaaaaaacactttttttttttttaatgataatttcTTCTTCCTAAAGAACTGGCCAAAAGTACACAAATGCgtcatttgaatatttaatttctcttttttttcagtgaaatCATTTCTGTTTTAACTTACACTACAGAGCATTCCAAAAACCAAAGTGtaaaatgcattatgttttttaAGTTCGTAAAAAGGAGTTTTAATataacactacatacatttaaaGGCCAAAAACAAACCGAAAaggaaacaaaaagcaaaaaaagcagTATTAACATCCTCTTGCGGATCCTTAGTTAATGTACAAAGCACTTACGATCTGAGAAAGGAAGCTCTCTCTACCCCATCTTGTGCTCAGGCGATTTGCAGTGTTGAGAACGCAGTCTTAAGACTGCATGCAAAAGGCACTTGAATAGCAGGTAATGTACTTTGTGACACTAGAAGCCAGCAGCAATGACGGTTTACTTCAAATACCAGTATTTCACAATAAATCGCAGTTCAACGAATACCAAAAATAAAAGCAGGCAAGCACTTGCTTGTTGTGCTCATCCTGCCTGTTGAACAGTATTATTTACCACACTAATAAGGGACGGCTGATAGGGActctttttttcatttgaaacCAATCATTTACCGCTTCTTTTCGCTACCGTACATAGTCACCTGTATGTTAAACACCTTCAaagaaataaaaccaaaaataacTCTACCTCCTTTTGAAAACAGTTCACAAAATAGATATAGGCCAATGAAAAGGTGTAAATCCCTTCTAGTTTTTcattcatccacacacacacacacattgtcggAAAAACCAAAATATCGCTGTGTTCCGTTGGCATGAatggaaacaaataaacaacggcaacaaaatataaataaataaaaaaagacgaCTACCTCTCCACCCcctacgaaaaaaaaaaataatgctgagTCCTGTTAAGTATGAAGCATTAAGTGGTCAACATATTTAAAAGGGTCTACTCCAAATCACATATTCCCCACTTTAAGCGATCTATTAGCATAGTGTCTATGTACAGGTCCTCTGTGCGGAGGCTTAATTGTGTGTTCTAATTCCGCATGCATAATGAGAGGCCAGGCCAATGAGAGCCATCGAGCTGGCCGGTCATTAGCACACACTCAATGGGCCAGTCAGTTGGGTGTCAGAAATGATGATAGGCAGAATGCATTAACGCAGGCCACTCTCGCACGGACCCCGCTTCCCAATTAATGCAAAGTGTGGAGAacaaaaacgcacacacacatgcacacacacacacacactgagatcaTCATGCTCCCGGCCTTTATTTTTAACCGCAAGACGAAACCAAAATATCCAAAGAGAAACATCAAGCTTGTGCTCTCAAGAACTGAGGATTTGaaggaactgaaaaaaaaaaaaaaactcgctgCATTATAGAAACGGACTACAATTGTGCTTTAAGGTACACTGAAACACATCAGTGATGATCGCCATGACTCCTTCGTTACTTCATGATGTATTATTGTATATTACCGCTCGGCTTAGCTGTCAAGGGCATTCCCTCCTTTTTGTGTTTCATTTATTTGCTtacttttcatttgttttatgttttccgcactgttttttttttttttttttttttttgctattgtaaAGTTTTGAGCTCAGAATACTGTATTGCTTATGCTGAAGTGTATGTATTTATCATATTATGTGCTGCAGGTatcatttttatgtttgttactttgtttttCCCAGTTTTTTCTGTCATAAAACGTCTGGGAcgatgatgattttttttattattttattttttagtgtattatctcaaaattgaaaaaaaaaacaaaaaagattaagAGTTAGATAAGTGGTTTAGGTAACACACACCTGTTTGTATATTTATCTTAGCTAGGTCTATTTTGATACTTTTTGTCTCTGTAgtgcatttatgcatttttaaggaaaaaagagagaaaactaaactaaaaagctGAACTCATTGTGTAATGATACCTCAGAAGGACTTTTCTCAAAAGACAGGACCAAAACTTcattgaaagagaaaaaaaagacattgaaGAAACTAAATGTGTAGCCCTCTCTTGCTTATAAGaaaggtgtttgtttttttattgttattattttaatattggtCCATTTAGGTGCCAATACATGTACAGACTccctttaaaacaaaatcaaatcattCCTTTATTTACCATGATGAGCACTCAAAGCTGTTTTTCATAAGGCAATCGTGCTTCAGAATAAGTGGCTCTCTTTGGTTACCAATGGAGAGCATCTTCCATACAGTATATTTTGGCTTCTCTTGTAACATTAAGTTTGCCATCTGCTGTGAACTTGATGTGGATTTTCCACAGtagcaaaccaaaaaaaaaaaaaaaatgtaataataatgcaGTTCATCTTCAACGACCACCAAAGGGATTGTGGATTGACGTTTTTACTTCAAGTCTGCCACAACTGTAACCAAACAAACGCTTGAGGAAGATGACTATGTCTTTAAAGCAGAGCTACAATGCCAGTGATGAATAGCTTTGAGttgcctgtttgtttgtttgtttttaagtaaagGATTCCTTCAAGGGAGCTTTTTTTGCCTGATGGTATTAACTTCTTCGGCCAATCGAATGGAACTACCACTTTGACTCTCCTCTCATTGTATTTTTTAcgaatgtgtgtacattttttcAGCAGTGACTTCTATGTactttagtttcattttaacttCCGTTTGTTTGTTTCGCTTTTTCAGATGAGACTTGGGGGAAGAAAAGGTGGTGGCTTTTGAAATGGTatagaaaattaaagaaaaaaaggcaaCTAGCCATCCACCTTTGTCGTTCTAACCCCCCGGTGACCATGTTTATGCCAGTCACTGCCGTTTTTTCTTCatgctgtataaaaaaaaaacacatatatctgTGTATTTGTAACCTGAATCTTCTTGTGTCTGTccatgcagacaataaaaaaactGTACAGTAGGTCTAGTTGCATGTAATCTGTACTAATTATTGACAATGGCattataaaatgcaataaaaatacttATTACAC

Function

symbol description
foxp4 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human FOXP4 (forkhead box P4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101207-1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human FOXP4 (forkhead box P4).

Ensembl:

ensembl_id ENSDARG00000076120

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006687 False 775 mRNA 0.47 3 21910343 21962834
TCONS_00006688 True 7128 mRNA 0.41 18 21910752 22094392

Neighbor

gene id symbol gene type direction distance location
XLOC_003419 NA coding upstream 6649 21902677 ~ 21903694 (+)
XLOC_003417 NA coding upstream 151318 21612671 ~ 21759025 (+)
XLOC_003418 CR812468.2 coding upstream 259705 21650522 ~ 21650638 (+)
XLOC_003416 FAM72B coding upstream 311816 21586335 ~ 21598527 (+)
XLOC_003415 NA coding upstream 501509 21406687 ~ 21408834 (+)
XLOC_003421 MDFI coding downstream 15495 22109887 ~ 22169026 (+)
XLOC_003422 ppfia4 coding downstream 280027 22374419 ~ 22584452 (+)
XLOC_003423 BX537143.1 coding downstream 502334 22596726 ~ 22599593 (+)
XLOC_003424 si:ch211-86h15.1 coding downstream 528892 22623284 ~ 22630389 (+)
XLOC_003425 CU861893.1 coding downstream 619623 22714015 ~ 22714131 (+)
XLOC_003369 CR854846.2 misc upstream 5787261 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 9198347 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 9216080 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 9224744 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 9230315 12679732 ~ 12680028 (+)
XLOC_003414 NA non-coding upstream 603581 21302712 ~ 21306762 (+)
XLOC_003426 NA non-coding downstream 826077 22920469 ~ 22927188 (+)
XLOC_003428 BX571675.1 non-coding downstream 1302878 23397270 ~ 23397385 (+)
XLOC_003430 NA non-coding downstream 1499957 23594349 ~ 23597671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_02507677_02545533 FOXP4 coding CI01000058 null 2507594 ~ 2546413 (-)
bowfin (Amia calva) AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding CM030125.1 CM030125.1 46796042 ~ 46837010 (+)