Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110495500 |
| gene name | cd80 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 13406414 ~ 13409467 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cd80 | Predicted to enable virus receptor activity. Involved in positive regulation of peptidyl-tyrosine phosphorylation. Located in cell surface. Part of protein complex involved in cell adhesion. Implicated in type 1 diabetes mellitus. Biomarker of chronic obstructive pulmonary disease; demyelinating disease; relapsing-remitting multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037377.1 | False | 1012 | mRNA | 0.41 | 5 | 13406414 | 13409467 |
| TU1738620 | True | 325 | lncRNA | 0.40 | 2 | 13409002 | 13409398 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| bcor | LOC106574692 | coding | downstream | 3755 | 13312628 ~ 13402659 (-) |
| LOC110495506 | LOC106574645 | coding | downstream | 304736 | 13084843 ~ 13101678 (-) |
| LOC110495504 | dylt3 | coding | downstream | 321684 | 13081819 ~ 13084730 (-) |
| LOC110513917 | LOC106575727 | coding | downstream | 375093 | 12933662 ~ 13031321 (-) |
| LOC110519411 | dusp27 | coding | downstream | 483684 | 12912019 ~ 12922730 (-) |
| cd80 | cd80 | coding | upstream | 11915 | 13421382 ~ 13439064 (-) |
| LOC110495499 | LOC106575543 | coding | upstream | 56437 | 13465904 ~ 13470070 (-) |
| LOC110495493 | NA | coding | upstream | 275739 | 13685206 ~ 13699630 (-) |
| LOC110497005 | LOC106574767 | coding | upstream | 297927 | 13707394 ~ 13711944 (-) |
| LOC110495492 | NA | coding | upstream | 320893 | 13730360 ~ 13778831 (-) |
| G1518287 | NA | non-coding | downstream | 106545 | 13299637 ~ 13299869 (-) |
| G1518273 | NA | non-coding | downstream | 122751 | 13283327 ~ 13283663 (-) |
| G1518251 | NA | non-coding | downstream | 174730 | 13231409 ~ 13231684 (-) |
| G1518229 | NA | non-coding | downstream | 211783 | 13193288 ~ 13194631 (-) |
| G1518226 | NA | non-coding | downstream | 222254 | 13182524 ~ 13184160 (-) |
| G1518706 | NA | non-coding | upstream | 6560 | 13416027 ~ 13481973 (-) |
| G1518716 | NA | non-coding | upstream | 40648 | 13450115 ~ 13451916 (-) |
| G1518735 | NA | non-coding | upstream | 74377 | 13483844 ~ 13484331 (-) |
| G1518749 | NA | non-coding | upstream | 88861 | 13498328 ~ 13499343 (-) |
| G1518768 | NA | non-coding | upstream | 125430 | 13534897 ~ 13541351 (-) |
| LOC110495512 | LOC106574713 | other | downstream | 495572 | 12898791 ~ 12910954 (-) |
| G1518019 | LOC106575703 | other | downstream | 806083 | 12583728 ~ 12600331 (-) |
| G1517902 | NA | other | downstream | 1120782 | 12285078 ~ 12285632 (-) |
| G1518858 | LOC106574768 | other | upstream | 329984 | 13739451 ~ 13741567 (-) |
| G1518991 | NA | other | upstream | 561614 | 13971081 ~ 13972538 (-) |
| G1519529 | LOC106575569 | other | upstream | 1075212 | 14484679 ~ 14486096 (-) |
| LOC110495482 | LOC106575623 | other | upstream | 1096933 | 14506227 ~ 14507592 (-) |
| LOC110495477 | fundc1 | other | upstream | 1171502 | 14580962 ~ 14587615 (-) |
| G1518225 | NA | non-coding | downstream | 224592 | 13179206 ~ 13184410 (-) |
