Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118941043 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 13450157 ~ 13451678 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC109870519 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037325.1 | False | 438 | mRNA | 0.52 | 2 | 13450157 | 13451678 |
| TU1738196 | True | 292 | lncRNA | 0.55 | 2 | 13450302 | 13451677 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118941100 | NA | coding | upstream | 57403 | 13390029 ~ 13392754 (+) |
| LOC118941099 | LOC106574646 | coding | upstream | 315314 | 13133117 ~ 13134843 (+) |
| LOC110495507 | LOC106574647 | coding | upstream | 317948 | 13102629 ~ 13132209 (+) |
| gp91phox | cybb | coding | upstream | 369338 | 13075064 ~ 13080819 (+) |
| cd3z | cd3z | coding | upstream | 551422 | 12886095 ~ 12898735 (+) |
| LOC110495498 | LOC106574751 | coding | downstream | 23396 | 13475074 ~ 13503268 (+) |
| LOC110495496 | NA | coding | downstream | 64664 | 13516342 ~ 13518076 (+) |
| trnaa-ugc-135 | NA | coding | downstream | 65284 | 13516962 ~ 13517036 (+) |
| LOC110497006 | LOC106574795 | coding | downstream | 68480 | 13520158 ~ 13556352 (+) |
| LOC110495495 | LOC106574775 | coding | downstream | 141302 | 13592980 ~ 13622818 (+) |
| G1518359 | NA | non-coding | upstream | 9327 | 13440560 ~ 13440830 (+) |
| G1518292 | NA | non-coding | upstream | 147346 | 13302593 ~ 13302811 (+) |
| G1517551 | NA | non-coding | upstream | 231496 | 13218447 ~ 13218661 (+) |
| G1517544 | NA | non-coding | upstream | 264078 | 13185844 ~ 13186079 (+) |
| G1517543 | NA | non-coding | upstream | 268000 | 13177116 ~ 13182157 (+) |
| G1518374 | NA | non-coding | downstream | 15602 | 13467280 ~ 13519064 (+) |
| G1518414 | NA | non-coding | downstream | 108145 | 13559823 ~ 13560040 (+) |
| G1518416 | NA | non-coding | downstream | 109919 | 13561597 ~ 13561803 (+) |
| G1518422 | NA | non-coding | downstream | 116997 | 13568675 ~ 13568877 (+) |
| G1518427 | NA | non-coding | downstream | 126418 | 13578096 ~ 13578352 (+) |
| G1517545 | NA | other | upstream | 262077 | 13187101 ~ 13188080 (+) |
| G1517457 | NA | other | upstream | 507663 | 12937523 ~ 12942494 (+) |
| G1517456 | LOC106575727 | other | upstream | 513879 | 12934654 ~ 12936278 (+) |
| G1517414 | LOC106575752 | other | upstream | 577994 | 12833651 ~ 12872163 (+) |
| G1517150 | NA | other | upstream | 1509052 | 11940062 ~ 11941897 (+) |
| G1519096 | NA | other | downstream | 983084 | 14434762 ~ 14436120 (+) |
| G1519538 | NA | other | downstream | 1047108 | 14498786 ~ 14499137 (+) |
| LOC110495481 | LOC106574739 | other | downstream | 1104648 | 14556326 ~ 14558589 (+) |
| G1519733 | NA | other | downstream | 1362304 | 14813982 ~ 14814886 (+) |
| il8r | il8r | other | downstream | 1446578 | 14898154 ~ 14901354 (+) |
