LOC110495499 (LOC106575543)


Basic Information

Item Value
gene id LOC110495499
gene name LOC106575543
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13465904 ~ 13470070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469429.2
ATTGTGTGTTCAGTCAGATGTCTGTTAGAAGGAGGAAGTCAGTTCAGTCTCAAAGATTTATCACAGCTCTGAGGATGTCGAGGACTGTTGCCTGTCTGTTCTGTGTCTTAAAACTGTGTGTTGGAGCTGAGGCTTTGACAGAGACACTGGTAGAACTTGGACACAATGCAACACTGAACTGTTCCCTTAAAACTGTAACTGATGCACATTGGTACCTACATCGCCAACCACAGCCTCCACTGGCCATACTTCGCTCTTTCACTAGTAGGAGTCCTGATGCTTTTTATTACAATAAGAATTATAGACAGAAATATTCATTAGAAACAGGACATAGATTGTTAATACAGAATGTAACAGTAGATGATTGTGGAGTGTATTACTGTGCAAAGAAAGAAAACAATAGTTTCCTTTTCAGTAACGGCACCAGACTCATGACCCCTGTTGATCCTGAAGCAACAGAGCAACCCAGAGACTTCAACACAACATGGCTAAAGGGTCTTCTCATTGGATCCGCGGTCTTGAATGCAGTGCTCATTTTATTGGTGTCAGCCATTTCAGTGCTGTGGAAGAGAGTTGCTTGCCAGAAGAACCATGACTCTCCTCCAACCCCTGAACCACCTGAAAGGACAGACAGTCTAGAGTATGAAGTGATACAGCTGGTACCCCAAGCGAGAGGACTAAGGCCCGACCACATAGCCTCAACTATTTACTCAAGAGTCCAGTTTCCAAATCATGAACTCACAACTACTACTTAATAAGGTGCCAAATCTTGACTTTGATGGATAATGTGAACTAGAAAATGACTTTGGAAGATAAAGTGAATCTACTcataatattcatatttttgtGTAATGTATTTAGTGGTGCTCTTCGTCACTATCGTCTATATACCAGTCAGCAATATCTTTGAAGGAAATATCTTTGAAGGAAATTATTACTTTTGTGTCTTGATTCatgtttttcatttttcattgctGGAAATAAGTTCATATTTGCCTGTCTTGAAAGTAAACTGTTACTTTTTTTGTGAAGCAGTTAGGAAGAGGTTTGTGCATTTCTGTAGAAAAAGCCCCCAAGCCTTTTGTAGTGTATTGATGCTGCATCAACCACACATATCCTGTTTGTGAGCTAAGTTACATGTCCCAATTATTGTACAATAAACCATTTTTCATGACTTGTACAAGCTTTCAATTAGTTCATTAGAAAGCCTACTTCATGTGCCCCACAACACCTTTCTGAGTAGAAGGTAGTGTCACAACTTCTGCCGAGGTCGGTCccgctccttgttcgggcggcgttcggcggttgacgtcaccggtcttctagccatcgtcgctCAACCTTTCAGTTTCCATTTCTTTTGTCTTGTTTACCTGGTTCACATTCCCTCATCATATTAAATGTATATTACcatctgtttcccccatgtctgtgtgtggaattgatCTTTGTGTAGGGTGTTACGCTACAGGCTGGCTTGCGctaggtttgtttgttttgtttaacccGGTTCATGTTTTCAATAGCTTTTCTTGCTCTGCCAGAGATGCCAGAGATGAATTGACAATCACCACTTCCTCTTTGCACAGACTTGCGCTTCATGTGGAAACTTTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469429.2 True 1615 mRNA 0.41 5 13465904 13470070

Neighbor

gene id symbol gene type direction distance location
cd80 cd80 coding downstream 26840 13421382 ~ 13439064 (-)
LOC110495500 cd80 coding downstream 56437 13406414 ~ 13409467 (-)
bcor LOC106574692 coding downstream 63245 13312628 ~ 13402659 (-)
LOC110495506 LOC106574645 coding downstream 364226 13084843 ~ 13101678 (-)
LOC110495504 dylt3 coding downstream 381174 13081819 ~ 13084730 (-)
LOC110495493 NA coding upstream 215136 13685206 ~ 13699630 (-)
LOC110497005 LOC106574767 coding upstream 237324 13707394 ~ 13711944 (-)
LOC110495492 NA coding upstream 260290 13730360 ~ 13778831 (-)
LOC110495490 LOC106574769 coding upstream 325339 13795409 ~ 13800006 (-)
LOC110495489 LOC106575650 coding upstream 333311 13803381 ~ 13833406 (-)
G1518716 NA non-coding downstream 13988 13450115 ~ 13451916 (-)
G1518287 NA non-coding downstream 166035 13299637 ~ 13299869 (-)
G1518273 NA non-coding downstream 182241 13283327 ~ 13283663 (-)
G1518251 NA non-coding downstream 234220 13231409 ~ 13231684 (-)
G1518735 NA non-coding upstream 13774 13483844 ~ 13484331 (-)
G1518749 NA non-coding upstream 28258 13498328 ~ 13499343 (-)
G1518768 NA non-coding upstream 64827 13534897 ~ 13541351 (-)
G1518772 LOC106574749 non-coding upstream 75699 13545769 ~ 13552124 (-)
G1518783 NA non-coding upstream 94488 13564558 ~ 13564780 (-)
LOC110513917 LOC106575727 other downstream 489463 12933662 ~ 13031321 (-)
LOC110495512 LOC106574713 other downstream 555062 12898791 ~ 12910954 (-)
G1518019 LOC106575703 other downstream 865573 12583728 ~ 12600331 (-)
G1517902 NA other downstream 1180272 12285078 ~ 12285632 (-)
G1518858 LOC106574768 other upstream 269381 13739451 ~ 13741567 (-)
G1518991 NA other upstream 501011 13971081 ~ 13972538 (-)
G1519529 LOC106575569 other upstream 1014609 14484679 ~ 14486096 (-)
LOC110495482 LOC106575623 other upstream 1036330 14506227 ~ 14507592 (-)
LOC110495477 fundc1 other upstream 1110899 14580962 ~ 14587615 (-)

Expression


Co-expression Network