LOC110497005 (LOC106574767)


Basic Information

Item Value
gene id LOC110497005
gene name LOC106574767
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13707394 ~ 13711944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951889.1
cctttggggagggtgtatagtgtgaaaggccgaaacaccctaggaaccaaagAATCTCAACACCAATACCTCTGAACTGATAGCTGACAAAGGAGGTTCTACCGATGTCCAGATTGTTATCAAATTCACACCAGTTTTGCATAGTAAAAACACAAACCACTCCATTGGTTTTGTGCTCTACCAAAACGACCGGTTCTTCAGGTCCAAGGCTTTCAGCGCTTCTTCAGGGACCAGCAGAAGGGTCATCTCTGCTAACCTGGGACAAGTGTCTGGATTACATGTTGAGATGCTCTTCAAGCCCACAGCTGTTCCCAACACCTCCCTCTATGACTTTGCCTGCGTGTCATGGAACTACACGTTGAAAGACTGGAGCACCTTTGGCTGCTCCAAAGTCAACCACTCAGCAGACGGCCTGCGATGTTTCTGTAATCACACCACTAACTTTGCTGTGCTGATGTCGTACAGGAAGGATTTTAAATACCCTGCGCTCACCATATTGGGATGTTCCATGTCAATCATTGGGTTGAGTTTAACAATAACATTCCAGATGGTGACCAGGAAATCACGCAAAACCAACCCAACGGTCCTCTTAGTGAGCGTCTGCATGTGTCTCCTGATCTTCACCCTCCTCTTCATGTTGGGAGTGGACAACCCTCATAAACAGCTGGGCAAACCTGAAATACAGAAGGACAACATTCTCCCCCcgtccgacacacacacagagcgggaCAGAGGTCCCTGTACTGCAGTGGCAGTCCTGCTGCAGTACTTCCTGTTGGGGACGTTCACCTGGAACACGCTGTTCGCCACACATGTCTTCCTGATGATCAGAAACAGCCTGGCCACCAGCCCGTCACACTTCACAGCCTATACCGTGGCCATCGGATGGGGACTGCCTGCAGTTGTGGTGGCCCTCACCTTAGGAATTAGTTACAGAGTGGATGATCCACTGGGTTACAGGCAGGAAGAATTTAGCTGGCTTGCTGCCCTCGATCCAAAGGGGAACTTTGACTTCAAGCTGCCAATGTTTTGGGGTTTCCTGATTCCTGTGGCGTTCATGCTAATCTTCAACACGGTGGTGTTGCTTTGTTTTGCAGTTAAGACCAACCCACATTTAACCAGTACAAGACACACATCGATGAAGAAGAAGTTCCTCAGTAGCTTTTCTCTGGCTGTGGTGCTCGGTCTCTCCTGGATCCTGGGCTATCTGTTGCTCATTACACAGAACCAGACCATGTACACCATACTCAACATCTCCTTCTGTGTTCTCACCACCACTCAGGGCTTGCAGATTTTCATTATGTTCACAGCAAGAACATCAATTGTCAAGAAAAAATATTTCAAGTACTTTGAAATCTGCCTCTAGTGTTGGGATCCCTCTTCACACTAGGAAGTTCAGTCTATGGCGAGGCGAGCACAGTGATAAAGTAGAATCATACACACATCTGGACACTGATCTGTCATTTTCACCTTGTTCCACAGACATCTAACTGATGGGCTGCAAGTTCAACCTCTGTTGTAAAATATCTCATATACCTCCACTATTGtcctataatatacagtataatacacacaACATTTTGTATGACGTATATTCACTGTGAATTCCCTTAGAAGTTGTGTTGTCCAATGAACTATCAAAATAAAGGAAGTGGCACACTGCATGCATCATCTCCCaacaatttaatgggtatttaccaacgtttcggcatcactgtgcctccCTCAATGATTTTTTTGACACAAATGCTGTATATCCTGAATATTTGTTCTTTCTAAAATGTTACTGTTTTTAAATAAATCTGTGATTATTCT

Function

NR:

description
flocculation protein FLO11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951889.1 True 1815 mRNA 0.46 11 13707394 13711944

Neighbor

gene id symbol gene type direction distance location
LOC110495493 NA coding downstream 7764 13685206 ~ 13699630 (-)
LOC110495499 LOC106575543 coding downstream 237324 13465904 ~ 13470070 (-)
cd80 cd80 coding downstream 268330 13421382 ~ 13439064 (-)
LOC110495500 cd80 coding downstream 297927 13406414 ~ 13409467 (-)
bcor LOC106574692 coding downstream 304735 13312628 ~ 13402659 (-)
LOC110495492 NA coding upstream 18416 13730360 ~ 13778831 (-)
LOC110495490 LOC106574769 coding upstream 83465 13795409 ~ 13800006 (-)
LOC110495489 LOC106575650 coding upstream 91437 13803381 ~ 13833406 (-)
LOC110495488 LOC106575654 coding upstream 153440 13865384 ~ 13874562 (-)
LOC110495482 LOC106575623 coding upstream 794283 14506227 ~ 14507592 (-)
G1518850 NA non-coding downstream 42673 13664465 ~ 13664721 (-)
G1518797 NA non-coding downstream 120864 13586214 ~ 13586530 (-)
G1518784 NA non-coding downstream 141382 13565782 ~ 13566012 (-)
G1518783 NA non-coding downstream 142614 13564558 ~ 13564780 (-)
G1518772 LOC106574749 non-coding downstream 155270 13545769 ~ 13552124 (-)
G1518861 NA non-coding upstream 6166 13718110 ~ 13720169 (-)
G1518953 NA non-coding upstream 181428 13893372 ~ 13893872 (-)
G1518992 NA non-coding upstream 257978 13969922 ~ 13970867 (-)
G1518991 NA non-coding upstream 259639 13971081 ~ 13972538 (-)
G1518994 NA non-coding upstream 261374 13973318 ~ 13973544 (-)
LOC110513917 LOC106575727 other downstream 730953 12933662 ~ 13031321 (-)
LOC110495512 LOC106574713 other downstream 796552 12898791 ~ 12910954 (-)
G1518019 LOC106575703 other downstream 1107063 12583728 ~ 12600331 (-)
G1517902 NA other downstream 1421762 12285078 ~ 12285632 (-)
G1518858 LOC106574768 other upstream 27507 13739451 ~ 13741567 (-)
G1519529 LOC106575569 other upstream 772735 14484679 ~ 14486096 (-)
LOC110495477 fundc1 other upstream 869025 14580962 ~ 14587615 (-)

Expression


Co-expression Network