LOC110495490 (LOC106574769)


Basic Information

Item Value
gene id LOC110495490
gene name LOC106574769
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13795409 ~ 13800006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570767.2
CTGTCCAATCACAGACTGAATAGTCAACACTTCCGTATTGCACATGTCTACGGGAGAAAGGAGGAATGTCCACCGAGTTTAATCGCAATAAGTTTGTTAATTGAACGTGTAACGACTATTGTTGTACTGAAAATACAGCGGGAACCATGGCTTCCCGAGCTGGACCTCGAGCTACTGGCACAGATGGAAGTGACTTTCAGCACCGCGAGAGAGTGGCCTCACACTACCAGATGAGTGTCGCCCTCAAGTCCGAGATCCGTAAGCTGAACATCGTCCATGTTCTGATCTGGCTCCTCTTAGCTGCCCAGGTGACAGTGAGCCAGCTGAACCTAGTGTCCCACAGTGTGGTGGCTGCTCCCTACCAGTGGGAGTACCCCTACCTGCTCAGTGTCATCCCCTCCCTCTTCAGCTTCATGGCCCTGCCCAAAAACAACATCAGCTACCTGGTGATCTCCATGATCAGTGCCGGCCTCTTCTGCATAGCACCGCTCATCTACGGGGGCATGGAGATGTTCCCGGTGGCCCAGCAGCTGTACCGCCACGGCAAGGCCTACCGCTTCATCTTCGGCTTCTCTGCCGTGTCCGTCATGTACCTGGTGATGGTGATCGCGGTGCAGGTGCACGGCTGGCAGATCTACTACAGCAAGAAGCTGCTAGACGCCTGGTTCACCTCCACACAAGACAAGAAGAAGAAATGAGGATAGAGGACTAAATTATTTAAACAACTGACAAGGAATGACTATTGCTGCCTGCCACTGTCTGACACCACTTCTAGGCCCATCTTCCATCTATATTTGAATTCTACATCCCCATCCCTAATTGATAGTTGTAGGACTAATTGGAATACTCAGACTGTCCTGTCGTCTTCCTGGTAACCCTCTAACCTCCATTATCTCATCTCTTGGCTCTGGTGCCTGTGGACAGATTAAGACTGGAGTTGTCTGAGACTCCAGGGTTTAATGTTGACCTGTTCTGCTGCCTTTAGAAACCGTCCTCTTTATGTCTCAGTCCTGATCTATGGAGCTGGCTGCCATAATCTGTGAGGGATAcagttgtgtctttggctatgccggattaggTGATATGGCATGctgttctataaaataatttctctgtaactAATATTACCTGATTTGAGCTAATAAGGTAAATAATTACCTAGAAAGTCAGGGAaccacaaaataatgtttatagagctgttatcttccgaataaactcttaaagacctggtaatcttTTACATCAA
>XM_021570766.2
TCAGTCATCTGTCCAATCACAGACTGAATAGTCAACACTTCCGTATTGCACATGTCTACGGGAGAAAGGAGGAATGTCCACCGAGTTTAATCGCAATAAGTTTGTTAATTGAACGTGTAACGACTATTGTTGTACTGAAAATACATTTTTTGGACAGGCGGGAACCATGGCTTCCCGAGCTGGACCTCGAGCTACTGGCACAGATGGAAGTGACTTTCAGCACCGCGAGAGAGTGGCCTCACACTACCAGATGAGTGTCGCCCTCAAGTCCGAGATCCGTAAGCTGAACATCGTCCATGTTCTGATCTGGCTCCTCTTAGCTGCCCAGGTGACAGTGAGCCAGCTGAACCTAGTGTCCCACAGTGTGGTGGCTGCTCCCTACCAGTGGGAGTACCCCTACCTGCTCAGTGTCATCCCCTCCCTCTTCAGCTTCATGGCCCTGCCCAAAAACAACATCAGCTACCTGGTGATCTCCATGATCAGTGCCGGCCTCTTCTGCATAGCACCGCTCATCTACGGGGGCATGGAGATGTTCCCGGTGGCCCAGCAGCTGTACCGCCACGGCAAGGCCTACCGCTTCATCTTCGGCTTCTCTGCCGTGTCCGTCATGTACCTGGTGATGGTGATCGCGGTGCAGGTGCACGGCTGGCAGATCTACTACAGCAAGAAGCTGCTAGACGCCTGGTTCACCTCCACACAAGACAAGAAGAAGAAATGAGGATAGAGGACTAAATTATTTAAACAACTGACAAGGAATGACTATTGCTGCCTGCCACTGTCTGACACCACTTCTAGGCCCATCTTCCATCTATATTTGAATTCTACATCCCCATCCCTAATTGATAGTTGTAGGACTAATTGGAATACTCAGACTGTCCTGTCGTCTTCCTGGTAACCCTCTAACCTCCATTATCTCATCTCTTGGCTCTGGTGCCTGTGGACAGATTAAGACTGGAGTTGTCTGAGACTCCAGGGTTTAATGTTGACCTGTTCTGCTGCCTTTAGAAACCGTCCTCTTTATGTCTCAGTCCTGATCTATGGAGCTGGCTGCCATAATCTGTGAGGGATAcagttgtgtctttggctatgccggattaggTGATATGGCATGctgttctataaaataatttctctgtaactAATATTACCTGATTTGAGCTAATAAGGTAAATAATTACCTAGAAAGTCAGGGAaccacaaaataatgtttatagagctgttatcttccgaataaactcttaaagacctggtaatcttTTACATCAA

Function

NR:

description
protein jagunal homolog 1-B-like

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570767.2 False 1246 mRNA 0.48 3 13795409 13799998
XM_021570766.2 True 1266 mRNA 0.48 3 13795409 13800006

Neighbor

gene id symbol gene type direction distance location
LOC110495492 NA coding downstream 16578 13730360 ~ 13778831 (-)
LOC110497005 LOC106574767 coding downstream 83465 13707394 ~ 13711944 (-)
LOC110495493 NA coding downstream 95779 13685206 ~ 13699630 (-)
LOC110495499 LOC106575543 coding downstream 325339 13465904 ~ 13470070 (-)
cd80 cd80 coding downstream 356345 13421382 ~ 13439064 (-)
LOC110495489 LOC106575650 coding upstream 3375 13803381 ~ 13833406 (-)
LOC110495488 LOC106575654 coding upstream 65378 13865384 ~ 13874562 (-)
LOC110495482 LOC106575623 coding upstream 706221 14506227 ~ 14507592 (-)
LOC110495480 LOC108249344 coding upstream 730575 14530581 ~ 14578088 (-)
LOC110495477 fundc1 coding upstream 780956 14580962 ~ 14587615 (-)
G1518861 NA non-coding downstream 75240 13718110 ~ 13720169 (-)
G1518850 NA non-coding downstream 130688 13664465 ~ 13664721 (-)
G1518797 NA non-coding downstream 208879 13586214 ~ 13586530 (-)
G1518784 NA non-coding downstream 229397 13565782 ~ 13566012 (-)
G1518783 NA non-coding downstream 230629 13564558 ~ 13564780 (-)
G1518953 NA non-coding upstream 93366 13893372 ~ 13893872 (-)
G1518992 NA non-coding upstream 169916 13969922 ~ 13970867 (-)
G1518991 NA non-coding upstream 171577 13971081 ~ 13972538 (-)
G1518994 NA non-coding upstream 173312 13973318 ~ 13973544 (-)
G1519364 NA non-coding upstream 360274 14160280 ~ 14160701 (-)
G1518858 LOC106574768 other downstream 53842 13739451 ~ 13741567 (-)
bcor LOC106574692 other downstream 392788 13312628 ~ 13402659 (-)
LOC110513917 LOC106575727 other downstream 818968 12933662 ~ 13031321 (-)
LOC110495512 LOC106574713 other downstream 884567 12898791 ~ 12910954 (-)
G1518019 LOC106575703 other downstream 1195078 12583728 ~ 12600331 (-)
G1519529 LOC106575569 other upstream 684673 14484679 ~ 14486096 (-)
G1520339 NA other upstream 1476057 15276063 ~ 15277021 (-)

Expression


Co-expression Network