LOC110495489 (LOC106575650)


Basic Information

Item Value
gene id LOC110495489
gene name LOC106575650
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13803381 ~ 13833406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951891.1
TCACAAGCAGTCTCATGCCTCGGGAAGCCCCCAACTCCAACACCACCAAAAACAGGGAAAGTACAGAGACCTGCGGGCCAGAGTCACAAGCAGTCTCATGCCTTGGGAAGCCCCCAACTCCAACACCAAAAACAGAGGGAAAGTACAGAGACCTGTGGCCAGAGTCACAAGCAGTCTCATGCCTCGGGAAGCCCCCAACTCCAACACCAAAAACAGAGGGAAAGTACAGAGACCTGTGGCCAGAGTCAAAAGCAGTCTCATGCCTTGGGAAGCCCCCAACTCCAACACCAAAAACAAGAGGGAAAGTACAGAGACCTGCGGCCAGAGTCACAAGCAGTCTCATGCCTCGGGAAGCCCAACTCCAACACCACCAAAAACAGAGGGAAAGTACAGAGACCTGTGGGCCAAAGGACAGAGTGAGAGGTTAGGTCGTCATCGCGACAGGCCCTTGggtttgaggagaggagacactAAGGGACATGGCCAAGCCCCTCCCCTCTACTCATCTATTGGTGGTGGCACTCCAGCTGTGTCTAGTACTACGCCACCATGCCCGCGGGGCGGCATATTATGGGCACAAGCAGCCGCAGCAGCACCTTCCCCAGCAGCACCTTCCCCAGCAGCACCAGCCCATGCAACAGATACCTCACATGCCCCTAGGGAACGGGTATGGGAACGGGAATGGGAACGGGAATGGGGACGGGCTGCCCAAGCAACAATACGGGAAGGAAATGCCACAACATATGCCATATGGCAAagagattccatatgtgctaCCACAGTATGGGCAAGAGCTTCCACAGATGCTTCCACAGATGCACGAACAACCCCAGATGCCACCCAATAAGGGCAAGGGAAAAGGTCAGTCATATCCCAGTAATGGGAAAGGCCTTGGAGGCCCACCACCTGATGATAGGGGACTACAGGGTCCTGGTCCCGAGGGGCCACCAGGAGCCCAAGGGcctccaggaccacagggccctCCAGGGATGCTAGGTCAAGGGATGCCCGGCCCCCATGGAAAACCAGGCCCTCCTGGTCCCCAAGGGTATCCTGGGATAGGAAAACCAGGAATGCCGGGAATGCCCGGTAAACCTGGTGGAGGTGGCCAGCCTGGTCCGAAGGGCGACCTTGGTCCTGGTGGGGATGTAGGACCAATGGGGATGCCTGGGGGGCCAGGTCTTCCAGGGCCACCAGGCCTGCCAGGCATCGGGAAGCCAGGGGGTCAGGGACTGCCTGGGCAGCCTGGGCCTCGAGGGGAGCCTGGACACAAGGGCATACCTGGATTGCCTGGTCTTCCTGGGCCCAAGGGAGACAAAGGGATTGGCTTGCCAGGATTGCCAGGTTTGAAAGGACCTGGTGGACCTCCTGGGCCTCCTGGTCAAGGGGGTTTGCCAGGGGTTGGAAAACCAGGTCTGAATGGACTACCAGGATTGCCCGGGGGGGCAGGAAAACCAGGCCCACCTGGAGAAGGAGGACTTGCTGGTCCACCAGGTGAAGGGGGAGAACCAGGACCACCTGGGCTACCAGGTATTGGCAAGCCCGGGCATGATGGTTTGCCAGGACAACCAGGGTTCCCAGGCGGTAAAGGGGAATCAGGCCCACCAGGTTTGCCAGGGGGCTCAGGCCTACCTGGTTACGGAAAGCCAGGATATCCTGGACCAAAAGGAGACAAAGGACATGGAGGTTTTTCTGGAGCTCCAGGCCCAAAAGGTGACAAAGGTCATGGAGGTCTCCCAGGGCAGGAAGGCCTTCCTGGACCCAACGGGCCACCGGGCCTGCCCGGTACCATTGGGCCACCTGGGGGTCTTGGTTTCCCAGGTCCGAAGGGAGAAGGTGGCAATGGAGGGCCAAAGGGGCTGCCAGGTCCTAAAGGTGAGCCAGGGCCTCCAGGGCTTCCTGGACAGGGTGGGTATCCTGGAGAGGGTGGTCAACCAGGACCGAGAGGTATACCAGGGCCACTGGGTCCGAAAGGGGATAACGGCCACAAAGGGTTACCTGGCCTCCCTGGAGCTCCTGGAATGCCCGGTTCAAGGGGAGAAGGTGGAATGCCTGGAGAAAAAGGTCACCAGGGACCCAAGGGAATCCCTGGAAATTTTGGTCCAGGTGGGCCACTTGGTCCTCCCGGTCTTCCTGGGCCAAAAGGCGAGCTTGGTCCTCCAGGGAAACCTGGCTACCCCGGCGAAGGTAAACCTGGTGTTCCAGGCGCTTTAGGGCCCCAAGGGAAACCTGGCAACGGTGGACCCCCTGGTCAGCCTGGACAACCAGGACAACCTGGTCCCCCTGGCCCACCCGGACCCCCCACCCAACCACCTGGTCTTGGTGAAATCCTCCCTGAGCTGGGTCCTGGTCTGGACGGTCTTAAACAAGGCGGTTACAAGAAACCAAAGAATGGAGGGGACAGGAACGGCCTGGAGATGCCAGCATTCACGGCTCAGCTCACCAATCCTTTCCCCCCCGTAGGCTCCCCTGTGGTCTTCGACAAGCTCCTGTACAATGGCCATCAGGACTACAATCCCCAAACCGGCGTCTTCAGCTGTACCATACCGGGAATCTATTACTTTGCTTACCACGTCCACTGCAAAGGAGCGAATGTGTGGGTGGCGCTGGTCAAGAACAATGAGCCTGTGATGTACACATATGATGAGTACAAAAAGGGCAGCCTGGACCAGGCGTCAGGGAGTGCTGTGCTCCCCTTACAGCAAGGAGACACTGTGCATGTACAGCTTCCATCTGACCAGGCAGCAGGACTTTATGCCGGTCAATATGTCCACTCTTCATTCTCCGGATATTTATTGTACCCAATGTaaagatcaacaacaacaaaaagggcATCCACACCACAACTCACTCCATAGCTGttttattcattttaaaatgttgaccTCAATAGTGACACATGACAACGGTGAAAACTCGGCTCAGAAGTATGCAGGAGTGCTACAGCTATAGTATGTTTCTGCCTTTGTATTGCAGTATtagatgggtgaaaaaaaaataaaaatcaatctCTGCAATACATTTAATTTACCCCAGAAATTAATTTGGCAAAACCCTCAGATAAATTATTTGAGATGTCTGCATGTTGATATTCAGATAATTTTGCAAATTACAATTTCTTTTGGTTAATAGGGGGTAAAAATGTTGCAAATGATTGAGAATACTGACTATCCCAGTTGTAGCAGTGTCATCCACCTCACGTGATTGACAGTGTTTATAGAGAAAACATGGTTGCTGACATGCTATGGCGCTACTGTGGATAGCAGCATATTACATTGGAAACCGTGTGTTATTTTTTATTAAAGAGAACTATTTTCAGGATGGAATTATTACATTTGCCCAACATGTTCTTCTCCTTATGTGAATACATAGCATTtgtttgtattttatatttgcaTATCAGATTTATGTTATGTGCACTCAGTATATCCGTTCTTAGCATTCCAACAGTCACAGCCATTATGACGCCACTAAAGGGCTAGCCGTCTGCCGCAGCTTTCATAAGCAAGCATCAACGCATCAGCTTTACCTGTCATGCATACCTAATGTTAGTACACAATTATTCTTCAGAGGTTATTCTTCCATGTGTGGACTTTTCAGAAGACATTCTAATGTCTTTATTTCATGCCAGATTATACTTTTGGCATATAAGTAACACTGTTACATTCACAGTATGTTCCCCTTTAACAACATGATTTTCCTGATCCCATAGTTCCTCCACGACAGATTGATTTCTTTTTTATCATCATCAATTTATTCACGTTGTTCCAGATTATGCAGTAGTGTCtaccatttttatttattgatATCATATTTGGAAATGAGATGGTTTCATGGTTTGGaacctaaaataaaataaaattgataTGCAACATAGTGAAGACATTTGGTTGTAAGTTGCCCATTTCATCTGTTGTGCATTAATAAATAAATGGGAGTTATGGGAGATTGAAGGTGTGTATAGTCAACATTTCCAATATGCACATTAAGTTTAAAAGTCAACCACACTTCTCTAAGGTATGTGGCAGTATTCCTCTCTGTCATTTATTTGTTTAACTACTGATTTTGTCTGAAATTGTAAATGTGTATACCTGTTGAGACTGCCTTGAAGGAAAAAAGAAACGTTACCTGACAATGGTGCTAAACATATAACCAAATGAAGGACTTAGTATAATGTTTTTGGCACTATTATTGTTTTTCTAAATAAAGATGAAGTGATTAAAACAA
>XM_021570765.2
GCACATAAAAGCCTAGTCCAtgctgtttacttctgttcaggGGTCTGTATCACACTTCTGTAACTCCAGTGATAGTTCCCCTCAACAGACACACACTGAGCAAGGACATGGCCAAGCCCCTCCCCTCTACTCATCTATTGGTGGTGGCACTCCAGCTGTGTCTAGTACTACGCCACCATGCCCGCGGGGCGGCATATTATGGGCACAAGCAGCCGCAGCAGCACCTTCCCCAGCAGCACCTTCCCCAGCAGCACCAGCCCATGCAACAGATACCTCACATGCCCCTAGGGAACGGGTATGGGAACGGGAATGGGAACGGGAATGGGGACGGGCTGCCCAAGCAACAATACGGGAAGGAAATGCCACAACATATGCCATATGGCAAagagattccatatgtgctaCCACAGTATGGGCAAGAGCTTCCACAGATGCTTCCACAGATGCACGAACAACCCCAGATGCCACCCAATAAGGGCAAGGGAAAAGGTCAGTCATATCCCAGTAATGGGAAAGGCCTTGGAGGCCCACCACCTGATGATAGGGGACTACAGGGTCCTGGTCCCGAGGGGCCACCAGGAGCCCAAGGGcctccaggaccacagggccctCCAGGGATGCTAGGTCAAGGGATGCCCGGCCCCCATGGAAAACCAGGCCCTCCTGGTCCCCAAGGGTATCCTGGGATAGGAAAACCAGGAATGCCGGGAATGCCCGGTAAACCTGGTGGAGGTGGCCAGCCTGGTCCGAAGGGCGACCTTGGTCCTGGTGGGGATGTAGGACCAATGGGGATGCCTGGGGGGCCAGGTCTTCCAGGGCCACCAGGCCTGCCAGGCATCGGGAAGCCAGGGGGTCAGGGACTGCCTGGGCAGCCTGGGCCTCGAGGGGAGCCTGGACACAAGGGCATACCTGGATTGCCTGGTCTTCCTGGGCCCAAGGGAGACAAAGGGATTGGCTTGCCAGGATTGCCAGGTTTGAAAGGACCTGGTGGACCTCCTGGGCCTCCTGGTCAAGGGGGTTTGCCAGGGGTTGGAAAACCAGGTCTGAATGGACTACCAGGATTGCCCGGGGGGGCAGGAAAACCAGGCCCACCTGGAGAAGGAGGACTTGCTGGTCCACCAGGTGAAGGGGGAGAACCAGGACCACCTGGGCTACCAGGTATTGGCAAGCCCGGGCATGATGGTTTGCCAGGACAACCAGGGTTCCCAGGCGGTAAAGGGGAATCAGGCCCACCAGGTTTGCCAGGGGGCTCAGGCCTACCTGGTTACGGAAAGCCAGGATATCCTGGACCAAAAGGAGACAAAGGACATGGAGGTTTTTCTGGAGCTCCAGGCCCAAAAGGTGACAAAGGTCATGGAGGTCTCCCAGGGCAGGAAGGCCTTCCTGGACCCAACGGGCCACCGGGCCTGCCCGGTACCATTGGGCCACCTGGGGGTCTTGGTTTCCCAGGTCCGAAGGGAGAAGGTGGCAATGGAGGGCCAAAGGGGCTGCCAGGTCCTAAAGGTGAGCCAGGGCCTCCAGGGCTTCCTGGACAGGGTGGGTATCCTGGAGAGGGTGGTCAACCAGGACCGAGAGGTATACCAGGGCCACTGGGTCCGAAAGGGGATAACGGCCACAAAGGGTTACCTGGCCTCCCTGGAGCTCCTGGAATGCCCGGTTCAAGGGGAGAAGGTGGAATGCCTGGAGAAAAAGGTCACCAGGGACCCAAGGGAATCCCTGGAAATTTTGGTCCAGGTGGGCCACTTGGTCCTCCCGGTCTTCCTGGGCCAAAAGGCGAGCTTGGTCCTCCAGGGAAACCTGGCTACCCCGGCGAAGGTAAACCTGGTGTTCCAGGCGCTTTAGGGCCCCAAGGGAAACCTGGCAACGGTGGACCCCCTGGTCAGCCTGGACAACCAGGACAACCTGGTCCCCCTGGCCCACCCGGACCCCCCACCCAACCACCTGGTCTTGGTGAAATCCTCCCTGAGCTGGGTCCTGGTCTGGACGGTCTTAAACAAGGCGGTTACAAGAAACCAAAGAATGGAGGGGACAGGAACGGCCTGGAGATGCCAGCATTCACGGCTCAGCTCACCAATCCTTTCCCCCCCGTAGGCTCCCCTGTGGTCTTCGACAAGCTCCTGTACAATGGCCATCAGGACTACAATCCCCAAACCGGCGTCTTCAGCTGTACCATACCGGGAATCTATTACTTTGCTTACCACGTCCACTGCAAAGGAGCGAATGTGTGGGTGGCGCTGGTCAAGAACAATGAGCCTGTGATGTACACATATGATGAGTACAAAAAGGGCAGCCTGGACCAGGCGTCAGGGAGTGCTGTGCTCCCCTTACAGCAAGGAGACACTGTGCATGTACAGCTTCCATCTGACCAGGCAGCAGGACTTTATGCCGGTCAATATGTCCACTCTTCATTCTCCGGATATTTATTGTACCCAATGTaaagatcaacaacaacaaaaagggcATCCACACCACAACTCACTCCATAGCTGttttattcattttaaaatgttgaccTCAATAGTGACACATGACAACGGTGAAAACTCGGCTCAGAAGTATGCAGGAGTGCTACAGCTATAGTATGTTTCTGCCTTTGTATTGCAGTATtagatgggtgaaaaaaaaataaaaatcaatctCTGCAATACATTTAATTTACCCCAGAAATTAATTTGGCAAAACCCTCAGATAAATTATTTGAGATGTCTGCATGTTGATATTCAGATAATTTTGCAAATTACAATTTCTTTTGGTTAATAGGGGGTAAAAATGTTGCAAATGATTGAGAATACTGACTATCCCAGTTGTAGCAGTGTCATCCACCTCACGTGATTGACAGTGTTTATAGAGAAAACATGGTTGCTGACATGCTATGGCGCTACTGTGGATAGCAGCATATTACATTGGAAACCGTGTGTTATTTTTTATTAAAGAGAACTATTTTCAGGATGGAATTATTACATTTGCCCAACATGTTCTTCTCCTTATGTGAATACATAGCATTtgtttgtattttatatttgcaTATCAGATTTATGTTATGTGCACTCAGTATATCCGTTCTTAGCATTCCAACAGTCACAGCCATTATGACGCCACTAAAGGGCTAGCCGTCTGCCGCAGCTTTCATAAGCAAGCATCAACGCATCAGCTTTACCTGTCATGCATACCTAATGTTAGTACACAATTATTCTTCAGAGGTTATTCTTCCATGTGTGGACTTTTCAGAAGACATTCTAATGTCTTTATTTCATGCCAGATTATACTTTTGGCATATAAGTAACACTGTTACATTCACAGTATGTTCCCCTTTAACAACATGATTTTCCTGATCCCATAGTTCCTCCACGACAGATTGATTTCTTTTTTATCATCATCAATTTATTCACGTTGTTCCAGATTATGCAGTAGTGTCtaccatttttatttattgatATCATATTTGGAAATGAGATGGTTTCATGGTTTGGaacctaaaataaaataaaattgataTGCAACATAGTGAAGACATTTGGTTGTAAGTTGCCCATTTCATCTGTTGTGCATTAATAAATAAATGGGAGTTATGGGAGATTGAAGGTGTGTATAGTCAACATTTCCAATATGCACATTAAGTTTAAAAGTCAACCACACTTCTCTAAGGTATGTGGCAGTATTCCTCTCTGTCATTTATTTGTTTAACTACTGATTTTGTCTGAAATTGTAAATGTGTATACCTGTTGAGACTGCCTTGAAGGAAAAAAGAAACGTTACCTGACAATGGTGCTAAACATATAACCAAATGAAGGACTTAGTATAATGTTTTTGGCACTATTATTGTTTTTCTAAATAAAGATGAAGTGATTAAAACAA

Function

NR:

description
collagen alpha-1(VIII) chain-like

GO: NA

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951891.1 False 4227 mRNA 0.50 3 13803381 13816934
XM_021570765.2 True 3855 mRNA 0.50 3 13803381 13833406

Neighbor

gene id symbol gene type direction distance location
LOC110495490 LOC106574769 coding downstream 3375 13795409 ~ 13800006 (-)
LOC110495492 NA coding downstream 24550 13730360 ~ 13778831 (-)
LOC110497005 LOC106574767 coding downstream 91437 13707394 ~ 13711944 (-)
LOC110495493 NA coding downstream 103751 13685206 ~ 13699630 (-)
LOC110495499 LOC106575543 coding downstream 333311 13465904 ~ 13470070 (-)
LOC110495488 LOC106575654 coding upstream 31978 13865384 ~ 13874562 (-)
LOC110495482 LOC106575623 coding upstream 672821 14506227 ~ 14507592 (-)
LOC110495480 LOC108249344 coding upstream 697175 14530581 ~ 14578088 (-)
LOC110495477 fundc1 coding upstream 747556 14580962 ~ 14587615 (-)
LOC110495478 NA coding upstream 809669 14643075 ~ 14662564 (-)
G1518861 NA non-coding downstream 83212 13718110 ~ 13720169 (-)
G1518850 NA non-coding downstream 138660 13664465 ~ 13664721 (-)
G1518797 NA non-coding downstream 216851 13586214 ~ 13586530 (-)
G1518784 NA non-coding downstream 237369 13565782 ~ 13566012 (-)
G1518783 NA non-coding downstream 238601 13564558 ~ 13564780 (-)
G1518953 NA non-coding upstream 59966 13893372 ~ 13893872 (-)
G1518992 NA non-coding upstream 136516 13969922 ~ 13970867 (-)
G1518991 NA non-coding upstream 138177 13971081 ~ 13972538 (-)
G1518994 NA non-coding upstream 139912 13973318 ~ 13973544 (-)
G1519364 NA non-coding upstream 326874 14160280 ~ 14160701 (-)
G1518858 LOC106574768 other downstream 61814 13739451 ~ 13741567 (-)
bcor LOC106574692 other downstream 400760 13312628 ~ 13402659 (-)
LOC110513917 LOC106575727 other downstream 826940 12933662 ~ 13031321 (-)
LOC110495512 LOC106574713 other downstream 892539 12898791 ~ 12910954 (-)
G1518019 LOC106575703 other downstream 1203050 12583728 ~ 12600331 (-)
G1519529 LOC106575569 other upstream 651273 14484679 ~ 14486096 (-)
G1520339 NA other upstream 1442657 15276063 ~ 15277021 (-)

Expression


Co-expression Network